Pgla044333.2
Basic Information
- Insect
- Parnassius glacialis
- Gene Symbol
- retn
- Assembly
- GCA_033319125.1
- Location
- JAVANC010000020.1:31923219-31932768[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-19 1.1e-15 59.6 0.1 17 89 11 81 5 81 0.93 2 2 8.2 5.5e+04 -3.5 0.0 25 38 200 213 188 214 0.71
Sequence Information
- Coding Sequence
- ATGATCTCCAATGAGAAGAAAACCTATTCAAGCACTCCTATAAACCGGCTGCCTATAATGGCGAAGTCGGTGCTCGATTTGTACGAGCTATACAACCTGGTGATAGCCCGCGGCGGCCTAGTGGAGGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGCCTACGACTGCCGTCCTCTATCACGTCCGCCGCTTTCACATTGCGCACACAATACATGAAGTACCTGTACGACTATGAGTGTGAGAAGAAGAACCTCTCAACTCGTAGCGAGCTGGACGCGGCCATCGAAGGCAACAAGAGGGAGGGACGCCGCGCCTCCGGGCAGTACGACGCGCAGGCGGCACTCGCCATGCCGTCGCTGAACCGCGGCGTGTCGCTGTCGATGCCGCTGGCCCAGCCGCTGGCGCTGCCGCTGGGCGCCGTGCCCCGCCTGCCCATGCACGCGCCGCACCTCCACAACCACGACATCGAGTTCCGCGTGCGCGAGTACATGAAGATGATACAACAGCAACGCGACCTCATCAGAAACGGCTCTGAGTCGCCGCCGGGCAGTGGCGGCACAATGATGTCGCCGCGCGAGGCCGCGCTGAGTGCCATCGACGTGTCACGTCTTACTCTATGGTCGCTCTACAACAACAATAACAACAGCCCGCAGCTGGACCTCGAGCCGCAGCGTGAGGCGCTGAACCTAAGCGAGAGCCCGAACTCGAGCGCGAGCGGGAAGCGCGAGGCGTGCCGgtcgccgccgccgcccgcgAAGCGGCGCACGCCGCGGCCGCCCTCCCCGCGCCCGGGCGGCGAGCCCGAGCCGCGCCGCGCGCTCGCCGCGCACGCGCACCCGCACGCGCACGCGCCCGCgctcgcgcccgcgcccgcgcccgcgccgcagcTCAACGGCAACGCGAACGGCGTCAACGGCGCCGCCTTCAAGATCACCTCTAGAGGTGACGCTACCACAGGCGACCAACAACTCGTCGTCTCAATAGAGCTCAACGGAGTCACGTACGAAGGCGTTCTTTTCCCCTCACAAAATGGAAACGGACAGAACGGTCACAGGCAAATggtgtcttaa
- Protein Sequence
- MISNEKKTYSSTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPSLNRGVSLSMPLAQPLALPLGAVPRLPMHAPHLHNHDIEFRVREYMKMIQQQRDLIRNGSESPPGSGGTMMSPREAALSAIDVSRLTLWSLYNNNNNSPQLDLEPQREALNLSESPNSSASGKREACRSPPPPAKRRTPRPPSPRPGGEPEPRRALAAHAHPHAHAPALAPAPAPAPQLNGNANGVNGAAFKITSRGDATTGDQQLVVSIELNGVTYEGVLFPSQNGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01156067; iTF_00855681; iTF_01402530; iTF_01158502; iTF_00197160; iTF_01337558; iTF_00922685; iTF_01157452; iTF_00840110; iTF_01115500; iTF_01495569; iTF_01175994; iTF_00249499; iTF_01494847; iTF_01494105; iTF_00957746; iTF_01147892; iTF_01140725; iTF_01496344; iTF_01141437; iTF_01145086; iTF_01148619;
- 90% Identity
- iTF_01158502; iTF_01157452; iTF_01496344; iTF_01115500;
- 80% Identity
- -