Pxyl027747.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- bab1_1
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000069.1:9554193-9557295[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-17 1.6e-14 54.0 0.0 1 43 43 86 43 88 0.95 2 2 7.8 1.2e+04 -3.2 2.6 6 15 186 195 183 196 0.83
Sequence Information
- Coding Sequence
- ATGACAGGCAGAACAACAGACAGCTACCAGTACCAGCTGCAGTCCATGTGGCAGAAGTGCTGGAACACCAACCAGAGCCTGGTCCACAACTTGCGCTTCCGCGAGCGCGGGCCGCTGAAGTCCTGGCGCCCGGAGACCATGGCTGAAGCCATCTTTTCTGTCCTGAAGGAGGGATTATCGCTGTCGCAAGCCGCCAGGAAATATGACATCCCGTACCCGACGTTCGTGCTGTATGCCAACCGAGTTCACAACATGCTGGGGCCCAGTGCCGACGGCGGAGCAGATTTAAGGCCGAAGGGTCGTGGGCGGCCGCAGCGCATCCTGCTGGGAGTGTGGCCCGACGAGCACATCCGCGGCGTGATCCGCGCCGTCGTGTTCCGCGACACGCACGCCCCGCACCCCGCGCACCCGCCGCTGCCCTCGCACCACATCAAGGAGGAGGCGCTGCCCGTCTTCCCCGCCATCACGGACGGCATGACGGTGGTGCCGCCGGCGTACGGCGCCGTGCCGTGCGGCAACGGGCGCGAGGGCGGCGTGTCGCCCAGCGCGGCGGCGGCGGCGGCCGTGGCGGCCGTGGCGCACGGGCTGCGGCGGCAGATGTGCAACATGGTGGTGGCGGCGCAGCGGCCGGCCGAGCACGCCGCGCACCTGGGCCTGCCGCCGCTGCCGCTGCAGTCGCCGCGGCTGCCGTCGCCCATGTCCTCGGGACTGGAGTCTCCGCTCTGCTCGCCGCCGCCGCCGGGCCACGCGCTCGAGCCGCCCAAGCCCAGCGACGCGTACCGCCCGTTCGCCTCGCCGCGCCCCGACAGCCGCTACTCCGTGTCCGACGTGCGCGACCTGGTTGAGCCGGAGATGGGCCCGCCCAAGACCCCGCTGGGCCTGGCCAAGAACGGCAAGGAGCTGTCCACGGTGGTGCCGGTGAAGATGGAGCCGCCGGGCGTGGAGGCGCGCGCGGAGCACATGTGA
- Protein Sequence
- MTGRTTDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAPHPAHPPLPSHHIKEEALPVFPAITDGMTVVPPAYGAVPCGNGREGGVSPSAAAAAAVAAVAHGLRRQMCNMVVAAQRPAEHAAHLGLPPLPLQSPRLPSPMSSGLESPLCSPPPPGHALEPPKPSDAYRPFASPRPDSRYSVSDVRDLVEPEMGPPKTPLGLAKNGKELSTVVPVKMEPPGVEARAEHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079819;
- 90% Identity
- -
- 80% Identity
- -