Nio006194.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nymphalis io
Gene Symbol
-
Assembly
GCA_905147045.1
Location
LR989897.1:12050889-12059119[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00025 0.023 15.6 4.0 1 21 192 212 192 214 0.95
2 28 0.0024 0.22 12.6 0.6 2 20 242 260 241 262 0.93
3 28 1.6e-05 0.0014 19.4 0.3 3 23 289 310 287 310 0.96
4 28 1.1 1e+02 4.1 0.2 2 20 333 351 332 353 0.83
5 28 0.033 3 9.0 1.2 1 23 363 385 363 385 0.97
6 28 0.0017 0.15 13.0 0.2 1 23 405 427 405 427 0.96
7 28 0.00015 0.013 16.4 3.1 2 23 467 488 466 488 0.96
8 28 0.00049 0.045 14.7 2.2 2 23 532 554 532 554 0.97
9 28 0.00034 0.031 15.2 0.8 1 23 604 627 604 627 0.97
10 28 0.00031 0.028 15.4 0.2 1 23 683 705 683 705 0.97
11 28 0.0066 0.6 11.2 5.7 2 23 717 738 716 738 0.96
12 28 0.034 3.1 9.0 1.7 2 23 750 771 749 771 0.96
13 28 0.0035 0.32 12.1 1.7 1 23 781 803 781 803 0.98
14 28 0.021 1.9 9.6 9.3 1 23 832 854 832 854 0.96
15 28 0.0012 0.11 13.5 5.5 1 23 865 887 865 887 0.98
16 28 6.1e-06 0.00056 20.7 0.5 1 23 895 917 895 917 0.97
17 28 0.0025 0.23 12.5 0.1 2 23 937 959 936 959 0.97
18 28 9.7 8.8e+02 1.2 0.2 1 10 977 986 977 995 0.93
19 28 0.067 6.1 8.0 3.5 1 23 1006 1028 1006 1028 0.97
20 28 0.23 21 6.4 1.7 2 23 1039 1061 1038 1061 0.95
21 28 0.00065 0.059 14.3 0.3 2 23 1084 1105 1083 1105 0.95
22 28 0.002 0.18 12.8 0.2 2 23 1186 1207 1185 1207 0.95
23 28 3.7 3.3e+02 2.5 4.2 5 23 1217 1235 1214 1235 0.94
24 28 0.012 1.1 10.4 0.8 2 23 1246 1268 1245 1268 0.95
25 28 0.9 82 4.5 4.2 2 23 1285 1303 1285 1303 0.89
26 28 1.9 1.7e+02 3.5 1.7 2 21 1307 1326 1307 1327 0.93
27 28 0.15 13 6.9 0.5 2 23 1376 1397 1375 1397 0.93
28 28 0.0096 0.88 10.7 0.6 2 23 1408 1430 1407 1430 0.94

Sequence Information

Coding Sequence
ATGGCTCTCAAGCTTGGAAAATGCAGACTATGTCTCAAGCTCGGAGACTTCTATTCCATCTTTACGGTGGACAACAACTTACAACTCGCCGAAATGGTTATGGAATGTGCCCGGGTTAAAATATACGACGGCGATGGCCTACCAGATAAAATTTGCAGCGAATGTATTCAAAAACTCAGTAGCGCTCATATATTTAAACAACAATGCGAACGATCTGATCAAGAGTTAAGACGCAACTATATTCCTCCGCCAGGCTTTAGTTCACCAACACCACCCAACAGACAGAGCAGTGATTCAGCATTTTCGTCACAAACTGAAGTTTCTAAGCCATCATTGACATTCGAAAGCAAAGTAACACCCGTTAGTAGATCTCGTAAGCGAAGCGGTGATAGTGTTGACAATGCATCTATAAGCAGCCGTTCTCACGATTATCGACCTGGAAGTTCTAAACGCGTCGACGAACTACGAATGTCTCAGAAGAAGCCTAGGCTTTCGATTAATTCGGATTCTGATTACGACGACAACAGTGCCTCATTTTATTCAGCTGAAACTGACTCTGACGAACCATTACTACACAAATGCAAACAATGCGGTAAAGCATTCAAGACTGTCATCAGCTTAACAGCTCATATGAAATGTCACAAACGAAAAAATGCATTGAAGAATTTATCTTTAGCCGCCCCGAAAGAAATAAAAGATGCTACAGATGAAGAGGATAAACTGTCATGTGATAAATGCGGAAAGGATTTTAAATTGAAAATAATGTTAAAGCGCCACCACGATATCTGCAGCAAATCTCCTCGAAAAGAATTAATGGTGTCATTGGAACCGATCGATGCAATACAGCAAGTGGTAAAAATAGATTGTCAAATATGCACAACAAAGTTCAAGACAGTCGAGAACTTGGAGAAGCACATGAGGGTTGTGCACGCAGCTGTTCTGAAGAGGGATAATCCAACAACAAATCCAAGCAACGAAAATGGAAAAATATGCGTACCGTGTTTGTATTGCGGTCAGCCATTTGACGATTATTATAACCATAGCGCTCACTTCAATACGTGCCCTCAAAAGAATAATCTCGCCACTTTTGAATGCCCTGTTTGTACAAAAATTATAACTAAAAAGGGATGTTATTTCTTACACATTAAAGCGCATTTTTTTCCTTTGTCGTCTACTAAATCTTTACAAGAAATAATAGCGAAGCAGGAAAACTTTCAGTGCCGTATGTGTAACAAGAAATTGCCTAGCCAAGATTTGTTGATAACTCATCTAGCTGCTCACATGTCTAATATGGACGAGGCTGACGAAGGCGGTGACGAAGAGTCTAGAGCAAGCACAATAGACGATTCAGCATCAGTACATTCCGAATACAGTTCAAATATTTCTCGTGGACAATTAAAATGCAAAACTTGTGATAAATCATTCAAATACAAAAAATCTTTATTGACACACGAAGAAAAACATTCTCATGATGATAAAATTAAAACGGAAACACCGGACAGGAACAATTCGACAGACTTGTTAAACGAAACTACTAAGACCTTGAACCAGTACGAATCAGAATCGAGCCAAGACGAAGGCGAAGAAGATAATACCTGTGATATTTGCGAAAAGCAATTCTCATATAGAAGGCTACTTTTACAGCATAAACGAACCAAACATCCCATGACTTCAGGGTTTAAACGAGCTAAGATTAATTTGAAAAATTGTTCCGTTCGGTGTTTGATATGCGACATTGAAATGAAAGTGAGTGATATTAACGAACACAATCAGACACATATAACTGTTAACATTAAGCCGAGAAATTTATACACGTGTATGGAATGCGAAGAGCAATTTAAGAGTTGCAGTGCGCTGGCAAATCACATTAAATTAGTGCACAGACTAAAGCAACAGCCAAGTAAAATTAATGCACCGCCAACAGATTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAACCCCTGGACCAGCTCCAGAGTCACAACGGCTTTGGTGAGGTTTCCGCCAACGATAGTTCACCCTCGGTCAACATGAGTGGCTTTACTTGTCCAATTTGTAACAAACAATTGCCAACGTTGATATCTCTCAAAAGACACGTGAACTGGCATAATCATGTTGGGAAAAGTATGGAAAAGAAGTTGGAATGCTTTGTTTGTAAAGAGACATTCCGGTTTCAGTGTCATTATAAGATCCACATGCGTGAACATTACAATGACACTAATCTTGATCCAAAATTGCTAACTTGCTCGATCTGTAATCGAAAGAGCAAACACCTCCGTGCGGCCCAGGCACACATGAATTACCACAAGCAGACACGTTTTCAAAATAAAGACTATGAGTGCTCGATTTGCAAAAGAGTGTTCCAGCATCGCAAAGTTTATCTCTCGCATATGGCTATTCATTACAAACGCGGCGAGAGCGCCAATAATACAATTGTGGGTTGTGTGCTACCGAACTCGGTCGATAAGAATAAATTTGACGGCACGCATACCTGTCATCATTGTGGTAAAATTTGCGATTCGGAAAACTCGCTTAAACATCATATAAGTTGGCACAATTCTAAGACGTCGTTATTTGGTGCTCGACACGAATGTCATATTTGTAATTTGCAGTTCACAAACAAGAGGAGATTAGAACTTCACACCAGAACACACTTCGAAGATGATAACGGCCCTTTTAAGTGTAATATTTGCGGAAAAGGTTTCATAGATGAAGATTATTACAAGAGACACGTAAAAGGTCATAACTTTGATCATCAATCGCATAAAAAACGAATAGAAAAGCTTAGGAAAAACAAAGTGAAGTGTCCGATATGTGCTCGTTACTATCCCGACTTAGTAAAACTCATTCGCCACTTGCGACGGACCCATCCTGAGAGTAAAATGATAAAGGAGGATCCGGACGCGCCACCTCCAAGCTATTATTCTTGTAAATTGTGTGCTAAAGTTTTCTTAGACGAAAGAAGATTACAATTTCATGAAGAAGCTCACCTGCGGAAGCCAGAATTTTACAAGTGTAAATTCTGTGGCAAGAAGACGATATCGTTAAAAAACCACAGGATCCATATTAAAGGTCATCTCACTCAAAAATATATCGATAATCCATTGAAATGTCCACATTGCATCGAAACATTTATGCGTGGTTACGATTTACATTACCATTTGCGGGACGCTCATGACATTAATGAGACGTGGATAGAGGAACGGCGTAGTCAGACATTGGACGGTCCTTTAAAAGAGCTACAATGTTCAATATGTTTCAAGGTCTTAGCCAGCAAAGGTAACTTTGAAAGACATATTGATTATCACAATTCTCTAAGATGTAATTATTGCTTCGATTACTTTAGCTCTTTGAGATTCCTGGAGGGGCATCTCGCGTTCAGTTGTGACAAAAAGAAACTTATCGGTGACACAGAAATTTATCCGAAAAAAGTAAAGTGCCATGTTTGTTACAAAGCCTTCCATTTGCAAGTGAAATTAGATTGTCATTTACGTACCCAACACGGTATAAAAACGTTTAAAAAAGCATCCGAAGGAAAACAAGAAATCGTTTGCGATTATTGCTTTAAAGTTTTTGAAAATGAATATGCTCTCAGCACTCATAAAATATATCACCGTACAGTCGGCTACTATGGATGTATATATTGTAGTAGGAAGTTTAACACAATGACGTTGTATAGGAAACACAAAAATCATCACTTCTCCCAGCTAAATGTCGATAATCCAACGAAATGTGAGCATTGTGATGAGACATTCGTCGCGTTCAGAGAAATGATATATCACATGAGAGATGTTCACGGAGACGATAAAGAATGGGTTGTCCTACCAAAAGAATCGATAGAAGAAAAATGTAATATTTGTCAGAAAACATTCTTCAATTTACACAGACATTTAGATTATCACGAAGAAAACCGGTGCAAAAAATGTAGCGAGTACTTCTTTTCCCGAGCGGACTATGATAATCACCTCTGTGCTATCGACAGCGATGAGGAAGTCACTGAAACTAATACGAATGGCGTTCGGCCTGTATACGAAGAATGTAGTTTCTGTTTCAAACCTGTAACTCGAAAAAACTCAAAGCGTTTACACGATCAAATCCATCGAGGATCTGGTTCTATTTCATGCCGCTTCTGCCCACTTAAGTTTAAAACCATGGATGCTTTCAATATTCATGCATTTTCGCATAGAAGTAGAAAATATAAGAAAAAACCAATAAAATGTCGCAAGTGCGGCGAGCAGTTTGTGAAGTATGGTCCGTTCATAAAACATATGAAGTTTGTTCATAAGTGTTCTAAGAAGCTTCACTACAGAGCCACAGTGATGGCTGAAAAGTGTATTGTTTGTAATGAAGATTTTCCCAATTTACATAACCACTATCGCGCCCATTTGCAAAATCAGTGTCGGCAATGTCTCAAATATTTTACTTCATCTAAAGTGTTTTCTCTCCATGAATGCGATAAAGAAGATTCGGAGCCGTCTAAAGTCTTTGTATGTGACGCTAACTTATCGGCGCTTATTAACTCTTATGTACCAAAAGATGAAAAAGACGATGAGAAATATTACGGTCACGAAGAGGAGAAAGAAGACGAGATAGTAAACCAAGAGACGGTGACGCAAGATGAAGACAGTCAGAATTCTATAGACATTGACGAAGGAAATGTGCATGATATGGTGCATGTTCCAATTATATCCGATGTGTTGTCGCTTTTTACGAAAAAGGAAGTTAAAAGTAAATGTAATGTTGAAAACAATGGACAAAACAGTGTTAGTGGCAACATTGTGGTTCTTACTGATGATGATTCTATAGGTTTTGAGGAAAATGTACCTGTTATAACGATAGATGATTAA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTVDNNLQLAEMVMECARVKIYDGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYIPPPGFSSPTPPNRQSSDSAFSSQTEVSKPSLTFESKVTPVSRSRKRSGDSVDNASISSRSHDYRPGSSKRVDELRMSQKKPRLSINSDSDYDDNSASFYSAETDSDEPLLHKCKQCGKAFKTVISLTAHMKCHKRKNALKNLSLAAPKEIKDATDEEDKLSCDKCGKDFKLKIMLKRHHDICSKSPRKELMVSLEPIDAIQQVVKIDCQICTTKFKTVENLEKHMRVVHAAVLKRDNPTTNPSNENGKICVPCLYCGQPFDDYYNHSAHFNTCPQKNNLATFECPVCTKIITKKGCYFLHIKAHFFPLSSTKSLQEIIAKQENFQCRMCNKKLPSQDLLITHLAAHMSNMDEADEGGDEESRASTIDDSASVHSEYSSNISRGQLKCKTCDKSFKYKKSLLTHEEKHSHDDKIKTETPDRNNSTDLLNETTKTLNQYESESSQDEGEEDNTCDICEKQFSYRRLLLQHKRTKHPMTSGFKRAKINLKNCSVRCLICDIEMKVSDINEHNQTHITVNIKPRNLYTCMECEEQFKSCSALANHIKLVHRLKQQPSKINAPPTDLADFCEVVVTKAEPLDQLQSHNGFGEVSANDSSPSVNMSGFTCPICNKQLPTLISLKRHVNWHNHVGKSMEKKLECFVCKETFRFQCHYKIHMREHYNDTNLDPKLLTCSICNRKSKHLRAAQAHMNYHKQTRFQNKDYECSICKRVFQHRKVYLSHMAIHYKRGESANNTIVGCVLPNSVDKNKFDGTHTCHHCGKICDSENSLKHHISWHNSKTSLFGARHECHICNLQFTNKRRLELHTRTHFEDDNGPFKCNICGKGFIDEDYYKRHVKGHNFDHQSHKKRIEKLRKNKVKCPICARYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPSYYSCKLCAKVFLDERRLQFHEEAHLRKPEFYKCKFCGKKTISLKNHRIHIKGHLTQKYIDNPLKCPHCIETFMRGYDLHYHLRDAHDINETWIEERRSQTLDGPLKELQCSICFKVLASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLIGDTEIYPKKVKCHVCYKAFHLQVKLDCHLRTQHGIKTFKKASEGKQEIVCDYCFKVFENEYALSTHKIYHRTVGYYGCIYCSRKFNTMTLYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWVVLPKESIEEKCNICQKTFFNLHRHLDYHEENRCKKCSEYFFSRADYDNHLCAIDSDEEVTETNTNGVRPVYEECSFCFKPVTRKNSKRLHDQIHRGSGSISCRFCPLKFKTMDAFNIHAFSHRSRKYKKKPIKCRKCGEQFVKYGPFIKHMKFVHKCSKKLHYRATVMAEKCIVCNEDFPNLHNHYRAHLQNQCRQCLKYFTSSKVFSLHECDKEDSEPSKVFVCDANLSALINSYVPKDEKDDEKYYGHEEEKEDEIVNQETVTQDEDSQNSIDIDEGNVHDMVHVPIISDVLSLFTKKEVKSKCNVENNGQNSVSGNIVVLTDDDSIGFEENVPVITIDD