Math004728.1
Basic Information
- Insect
- Mellicta athalia
- Gene Symbol
- -
- Assembly
- GCA_905220545.1
- Location
- HG992177.1:20988780-20994347[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.023 2.9 9.9 4.8 1 20 153 172 153 175 0.93 2 28 0.0033 0.41 12.5 0.9 2 20 209 227 208 229 0.92 3 28 0.19 24 7.0 0.2 3 23 257 277 255 277 0.95 4 28 3.2 4e+02 3.1 0.2 3 15 295 307 294 314 0.75 5 28 0.00011 0.013 17.2 0.6 1 23 324 346 324 346 0.98 6 28 0.049 6.1 8.9 0.2 1 23 366 388 366 388 0.96 7 28 0.00017 0.021 16.6 2.0 2 23 427 448 426 448 0.96 8 28 0.0012 0.15 13.9 4.2 2 23 491 513 491 513 0.97 9 28 0.00056 0.069 15.0 1.6 1 23 563 586 563 586 0.96 10 28 0.00041 0.05 15.4 0.2 1 23 641 663 641 663 0.97 11 28 0.017 2 10.3 6.1 2 23 675 696 674 696 0.96 12 28 0.093 11 8.0 1.8 2 23 708 729 707 729 0.96 13 28 0.013 1.6 10.7 1.7 1 23 739 761 739 761 0.98 14 28 1.2 1.5e+02 4.4 7.1 1 23 790 812 790 812 0.94 15 28 0.00092 0.11 14.3 4.6 1 23 823 845 823 845 0.98 16 28 3.1e-05 0.0038 18.9 1.4 1 23 853 875 853 875 0.97 17 28 0.0033 0.41 12.6 0.1 2 23 895 917 894 917 0.97 18 28 0.11 14 7.7 3.7 1 23 964 986 964 986 0.97 19 28 0.025 3 9.8 2.9 2 23 997 1019 996 1019 0.95 20 28 0.00081 0.1 14.5 0.2 2 23 1042 1063 1041 1063 0.95 21 28 0.0026 0.32 12.9 0.2 2 23 1144 1165 1143 1165 0.95 22 28 2.1 2.6e+02 3.7 3.7 5 23 1175 1193 1172 1193 0.94 23 28 0.019 2.4 10.1 0.9 2 23 1204 1226 1203 1226 0.95 24 28 1.2 1.5e+02 4.5 4.2 2 23 1243 1261 1243 1261 0.89 25 28 0.19 23 7.0 1.5 2 21 1265 1284 1265 1285 0.93 26 28 0.51 63 5.7 1.0 2 23 1334 1355 1333 1355 0.93 27 28 0.0057 0.7 11.8 0.5 2 23 1366 1388 1365 1388 0.95 28 28 2.2 2.7e+02 3.7 1.6 2 19 1426 1443 1425 1446 0.92
Sequence Information
- Coding Sequence
- atgATATTCGAAGGAGATGGCCTTCCAGATAAGATATGCAGTGAATGCATTCAAAAACTTAGTAGCGCTCACATATTTAAACAACAATGCGAGCGGTCTGATCAAGAACTAAGACGAAATTATGTTCCTCCACCAGGCTTCAGTACACCGACACCACCCAACAGACAGAGCAGCGATTCTGCATTTTCATCGCAAACTGAAGTCTCTAAACCTTCATCGTCATTCGAAAGCAAGGTGACGCCAGTCAGTAGATCACGGAAGAGAAGCGGAGACAGCCTCGACAATGCATCCACGAGTAGCCGCTCTCATGATTACCAACCGGGAAGTTCGAAGCGGGTCGACCAACTTCGAATGTCTCAGAAGAAACCCAAGCTTTCTATGAATTCGGATTCAGATTACGATGACAATAGCCCTTCTTTTTATTCCCCTGAAACAGACTCCGATGAACCATTGCAGCATAAGTGTAACCAATGCGACAAAGCGTTCCGCTCGATTAAAAGTCTTTCAGCTCATTCTAAATGCCACAAAAGAAAAAGTGTgttgaataaattacaaatagaCACGAACACTTCCCTTGAATCGCCgaaagaaataaaagatgcTGCAGATGAAGCCGACAAACTGTCATGTGATAAATGTggaaaagattttaaattaaaaataatgttaaaacgCCATCACGAGATATGCGGGAAATCTTCGCCTCAAAAAGAGTTAATGATTACTTTGAAGCCAATAGATTCCGGGCCGAAAACCGGGGAAATCGACTGTGATATGTGCACGTCGAAGTTTAAAACGATTGAGGACTTAGAAGAACATAAAGTAATGCATGCGGCACTGCTTAAAGGGACtatcaatgaaaataaaaaagtagttgCCCCTTGTTTATATTGTGGTCTTTCTTTTGATGATTATAATCTTCATAACGCTCACTTCAACACATGTTCTCAGAAGTCCGACATTACTACCTTCGTGTGTCCTATTTGTACGAGAGCAATAACaagaaagggaaattatttctCACACCTTAAAACGCATTTTTTTTCGGTATCATCAACGCAATCCATAGCTGAAGTAGCTACCAAACAAGGAATCTTTCAATGCCGTATGTGTAGTATGAAACTACCAAATCAAAACTCATTGATTACCCATCTGGCTGCGCACTATTCTAATATCGACGACGCCGATGAAGGAGGCGACGAAGAATCAAGGGCAAGTATAGACGACTCAGTATCAGTTCATTCAGAATACAGTACAAGCTTCTCAAGTGGACCTTTAAAGTGCAAAACTTGTGATAAGTCATTTACATATAGGAAAGCTCTATTAACACACGAGCTAAAACATTCTCAAGGTGAAATAAAAACTGAAGTTATAGAAAAGGATAATTCTTCAAGTTTGTTAAATGAAACTACTGCTTCCTTGAAGCAATACGAATCGGAATCTAGTCAAGATGAGGGTGAAGAGGATAACACATGCGATATTTGCGAAAAGCAATTCTCCTATAAGAGACTACTGCTGCATCATAAAAGAACCAAACACCCGATGACTTCAGGATACAAGCGAGCCAAGGTCAATTTAAAGGATTGCTCCGTCCGGTGTTTGATATGTGATATTGAAATGAAAGTCAGTGCGATTAATGAGCACAATCAGACACATATATCAGTCAATATGAAGCCCAGAAATGTGTACACGTGTATGGAGTGTGAAGAGAAATTCAAGAGCTGCAGTGCGCTGGCTAATCACATTAAATTCGTGCACCGGCTCAAACAACAGCAAGTGAAAATTAATGCGCCGCCGGCGGATCTGGCGGATTTTTGTGAAGTCGTTGTGACGAAGGCGGAACCCCTGGATGAGCTCCAGAGTCACAACGGCTTTGGTGAGGTTCCCGTCAACAATGAACCGCTGGTAAACATGACTGGCTTTACGTGTCCCATTTGTAACAAGCAATTACCTACCTTGATATCTCTCAAAAGACACGTCAACTGGCATAACCACGTCGGgaaaagcatggagaaacagctCGAGTGTTTTGTTTGTAAGGAGACTTTCCGGTTTCAGTGTCATTATAAGTTACACATGCGTGAACACTATAACGACACGAATCTCGATCCAAAACTGTTGACCTGCTCCATCTGCAATCGTAAGAGTAAACATCTCCGCGCAGCTCAGGCGCATATGAATTTTCATAAACAGAcgcgttttaaaaataaagattacgAATGTTCTATTTGCAAGAGGATTTTCCAACATCGTAAAGTTTACCTCTCACATATGGCAATACATTATAAGCGCGGTGAAAGCGCTACCAACACTATTGTGGGTTCTGAGTTACCAAACTCAGTGGATAAAAACAAATTTGACGGTACTCATACCTGTCATCTATGTGGCAAGGTTTGTGATTCAGAAAATTCTCTGAAATGCCATATAACTTGGCACAAGTCGAAGACATCTTTATTTGGAGCTAGACATGAATGCCACATTTGTAACTTGCAGTATACGAATAAAAAGCGCCTTGAGCTTCACATTAGAACACATTTCGAGGACGATAATGGACCATTTAAATGTCATATTTGTGGGAAGGGTTACATTGATGAAGATTATTTTAGGAGACATGTAAAAGGCCATAACTTTGATAATCAATCACATAAAAAGCGAATAGAGAAGCTTAGGAAAAATAAGGTGAAGTGTCCGATTTGTGCTCGTTACTATCCAGACTTGGTGAAACTTATTCGCCACTTGCGACGGACGCATCCAGAGAGTAAAATGATTAAGGAGGACCCGGATGCGCCACCACCGAACtattattcatgtaaattatgTGCTAAAGTGTTCTTAGACGAGAGGAGATTGCAGTTCCATGAAGAAGCCCATTTACGAAAACcagaatttttcaaatgtaAATTCTGTGGTAAAAAGACAATATCACTGAAGAATCACAGGGTCCACATTAAAGGTCATCTCActcaaaaatatattgataatCCACTGAAATGCCCACACTGTGAGGAAAAGTTTATGCGAGGTTACGATCTACATTATCATTTACGTGACACTCATGATATCAATGAGACTTGGATAGAGGAACGGGGGAAACAGACTTTAGACGGTCCACTGAAAGACCTACAATGTTCTATATGTTACAAAGTCTTAGCCAGTAAAGGAAACTTTGAAAGGCACATAGATTACCATAACTCTCTTAGATGTAATTACTGTTTCGATTACTTTAGTTCACTTCGATTCTTGGAGGGACATCTTGCCTTCAGTTGTGACAAGAAAAAACTTATTGGTGACACTGAAATTTATCCGAAAAAGATAAAGTGCCATATTTGTTACAAACCTTTCCATTTGCAAGTAAAGTTGGATTGCCACTTACGCACTCAACATGACATAAGAACGTTCAAAAGAGCTTCCGAGGGGAAACAGGAAATTGTTTGTGACTATTGCTTTAAAGTATTTGAAAATGAATATGCTCTCAGTACTCACAAGATTTACCACCGTACTGTCGGCTACTACGGCTGTATATATTGTAACAGAAAGTTTAATAACATGACAGGTTAtagaaaacataaaaatcacCATTTTGCACAAATGAATGTGGACGAACCAAAAAAATGTGAACACTGTGACGAAACATTTGTAGCATTCAGAGAAATGATATACCATATGAGGGACGTTCATGGTGACGATAAAGAATGGATTATTCAGCCAAAAGAATCCATCGaagaaaaatgtaatatttgtcAGAAAACATTCTTCAATTTACATAGACATTTAGATTACCATGAAGAAAACAGATGCAAAAAATGCGGCGAGTACTTCTTCTCCCGAGCAGACTTCGATAACCACCTCTGTGCCATCGACAGCGATGAGGAAGTCACTGAAAATAATACTATTGGTACTCGGCCTGTGTATGAAGAATGTAGCTTCTGTTTCAAACCAGTGACCAGAAAGAATTCGAAACGTTTACACGATCAAATTCACAGGGTGTCTGGTGCTATATCCTGTCGTTTCTGTACccttaaatttaaaactatGGACGCTTTCAACATTCATGCGTTTTCACATCGAAGTAGAAAATACAAGAAGAAACCGATAAAGTGTCGCAAGTGTGGCGAACAGTTCGTGAAGTACGGTCCATTTATAAAACACATGAGGTTCGTTCACAAGTGTTCCAAGAAGCTCCACTACAGAGCCACGGTGAAGCCAGAAAAGTGCGTCGTCTGTAACGGAGATTTTCCAAATCTACATAATCATTATCGCGCTCATCTGCAAAATCAATGTCAGCAATGTCTCAAATATTTTACGTCTGCCAAAGCGTTTTCGTTGCACGAATGCGATAAAGATGATGCAGATCCATCTAAAGTGTTCACAAGTGACGCCAATTTACCAGCACTTATTAATTCCTACGTTCCGAAAGATGAAAAAGACGATGAGAAGTATTACGGTCACGAGGACGAAGGCGAAGAAGAGGGCGAGAGTGCCAACTTGGAGACAGGGACGCAGGACGACGACAGTCAAGCTTCCATTGATATAGATGAAGGAAAAGTCCATAACATGGTGCACGCGCCCATCATCTCCGATGTGTTATCGCTCTATAAGAAGAAGGACGTTAATACTAATTGTAAGACTGGCAACGATGAACAAAATAGTGTCAGCGGCAGTGTTGTAATTCTAACTGATGATGATTCCATAGGTTTCGAGGATAATGTACCTGTTATAACGATAGACGATTAG
- Protein Sequence
- MIFEGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSTPTPPNRQSSDSAFSSQTEVSKPSSSFESKVTPVSRSRKRSGDSLDNASTSSRSHDYQPGSSKRVDQLRMSQKKPKLSMNSDSDYDDNSPSFYSPETDSDEPLQHKCNQCDKAFRSIKSLSAHSKCHKRKSVLNKLQIDTNTSLESPKEIKDAADEADKLSCDKCGKDFKLKIMLKRHHEICGKSSPQKELMITLKPIDSGPKTGEIDCDMCTSKFKTIEDLEEHKVMHAALLKGTINENKKVVAPCLYCGLSFDDYNLHNAHFNTCSQKSDITTFVCPICTRAITRKGNYFSHLKTHFFSVSSTQSIAEVATKQGIFQCRMCSMKLPNQNSLITHLAAHYSNIDDADEGGDEESRASIDDSVSVHSEYSTSFSSGPLKCKTCDKSFTYRKALLTHELKHSQGEIKTEVIEKDNSSSLLNETTASLKQYESESSQDEGEEDNTCDICEKQFSYKRLLLHHKRTKHPMTSGYKRAKVNLKDCSVRCLICDIEMKVSAINEHNQTHISVNMKPRNVYTCMECEEKFKSCSALANHIKFVHRLKQQQVKINAPPADLADFCEVVVTKAEPLDELQSHNGFGEVPVNNEPLVNMTGFTCPICNKQLPTLISLKRHVNWHNHVGKSMEKQLECFVCKETFRFQCHYKLHMREHYNDTNLDPKLLTCSICNRKSKHLRAAQAHMNFHKQTRFKNKDYECSICKRIFQHRKVYLSHMAIHYKRGESATNTIVGSELPNSVDKNKFDGTHTCHLCGKVCDSENSLKCHITWHKSKTSLFGARHECHICNLQYTNKKRLELHIRTHFEDDNGPFKCHICGKGYIDEDYFRRHVKGHNFDNQSHKKRIEKLRKNKVKCPICARYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPNYYSCKLCAKVFLDERRLQFHEEAHLRKPEFFKCKFCGKKTISLKNHRVHIKGHLTQKYIDNPLKCPHCEEKFMRGYDLHYHLRDTHDINETWIEERGKQTLDGPLKDLQCSICYKVLASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLIGDTEIYPKKIKCHICYKPFHLQVKLDCHLRTQHDIRTFKRASEGKQEIVCDYCFKVFENEYALSTHKIYHRTVGYYGCIYCNRKFNNMTGYRKHKNHHFAQMNVDEPKKCEHCDETFVAFREMIYHMRDVHGDDKEWIIQPKESIEEKCNICQKTFFNLHRHLDYHEENRCKKCGEYFFSRADFDNHLCAIDSDEEVTENNTIGTRPVYEECSFCFKPVTRKNSKRLHDQIHRVSGAISCRFCTLKFKTMDAFNIHAFSHRSRKYKKKPIKCRKCGEQFVKYGPFIKHMRFVHKCSKKLHYRATVKPEKCVVCNGDFPNLHNHYRAHLQNQCQQCLKYFTSAKAFSLHECDKDDADPSKVFTSDANLPALINSYVPKDEKDDEKYYGHEDEGEEEGESANLETGTQDDDSQASIDIDEGKVHNMVHAPIISDVLSLYKKKDVNTNCKTGNDEQNSVSGSVVILTDDDSIGFEDNVPVITIDD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079240;
- 90% Identity
- iTF_00985378;
- 80% Identity
- -