Eedi004566.2
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000004.1:4633128-4641142[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.00033 0.048 15.5 3.0 1 21 192 212 192 214 0.93 2 29 0.0017 0.24 13.2 0.6 2 20 248 266 247 268 0.93 3 29 6.9e-05 0.0099 17.6 0.4 3 23 295 316 293 316 0.96 4 29 3.1 4.4e+02 3.0 0.1 2 14 334 346 333 354 0.78 5 29 0.023 3.3 9.7 1.6 1 23 364 386 364 386 0.97 6 29 0.002 0.29 13.0 0.2 1 23 406 428 406 428 0.96 7 29 9.7e-05 0.014 17.1 2.2 2 23 468 489 467 489 0.96 8 29 0.00036 0.052 15.3 2.3 2 23 532 554 532 554 0.97 9 29 0.0012 0.17 13.8 1.7 1 23 604 627 604 627 0.96 10 29 0.00036 0.051 15.4 0.2 1 23 682 704 682 704 0.97 11 29 0.0076 1.1 11.2 5.7 2 23 716 737 715 737 0.96 12 29 0.039 5.6 9.0 1.7 2 23 749 770 748 770 0.96 13 29 0.004 0.57 12.1 1.7 1 23 780 802 780 802 0.98 14 29 0.0033 0.47 12.3 5.9 1 23 831 853 831 853 0.96 15 29 0.00066 0.095 14.5 4.7 1 23 864 886 864 886 0.98 16 29 0.00013 0.019 16.7 1.4 1 23 894 916 894 916 0.97 17 29 0.0026 0.37 12.7 0.1 2 23 936 958 935 958 0.97 18 29 0.11 16 7.5 3.7 1 23 1005 1027 1005 1027 0.97 19 29 0.0033 0.47 12.3 2.1 2 23 1038 1060 1037 1060 0.95 20 29 0.00075 0.11 14.3 0.3 2 23 1083 1104 1082 1104 0.95 21 29 9.9 1.4e+03 1.4 5.9 2 23 1147 1169 1146 1169 0.94 22 29 0.0023 0.33 12.8 0.2 2 23 1185 1206 1184 1206 0.95 23 29 1.1 1.6e+02 4.4 3.7 5 23 1216 1234 1213 1234 0.94 24 29 0.048 6.8 8.7 0.8 2 23 1245 1267 1244 1267 0.95 25 29 1 1.5e+02 4.5 4.2 2 23 1284 1302 1284 1302 0.89 26 29 0.066 9.5 8.2 1.2 2 21 1306 1325 1306 1326 0.94 27 29 0.44 63 5.6 1.0 2 23 1375 1396 1374 1396 0.93 28 29 0.016 2.3 10.2 0.4 2 23 1407 1429 1406 1429 0.94 29 29 1.8 2.6e+02 3.7 2.2 2 19 1467 1484 1466 1487 0.92
Sequence Information
- Coding Sequence
- ATGGCACTCAAACTTGGAAAATGCAGACTATGTCTCAAGCTCGGAGACTTTTATTCCATCTTTACGGTGGACAACAACTTACAGCTTGCCGAAATGGTTATGGAATGTGCGCGGGTTAAAATATTTGAAGGAGATGGGCTTCCAGATAAGATATGCAGTGAATGCATTCAAAAACTTAGTAGCGCCCACATATTTAAACAACAATGCGAGCGGTCTGACCAGGAACTGAGACGAAATTATGTTCCTCCACCTGGCTTTAGTTCACCAACACCACCCAACAGACAGAGCAGCGATTCAGCATTTTCATCGCAAACTGAAGTCTCTAAACCGTCATCATCGTTCGAAAGCAAAGTGACACCTGTCAGTAGATCACGCAAGCGAAGCGGAGACAGCATCGACGATGCATCAACAAGCAGCCGCTCCCGTGATTACCAACCGGGAAGTTCCAAGCGGGTCGACCAACTTCGAATGTCTCAGAAGAAACCCAAACTTTCTATCAATTCGGATTCAGATTACGATGACAATAGCGCTTCCTTTTATTCCGCTGAAACTGACTCCGATGAACCGTTACTGCACAAGTGTGAACAATGCGGCAAAGCGTTCCGCACATCTACCAGTTTAGTAGCTCATGCAAAAtgtcacaaaagaaaaaatgcATTAAACAAATTACAAACTGACAAGAATACTTCCGTCGAATCGCCGAAAGAAATTAAGGATGCTGCAGATGAGGATGACAAACTTTCATGTGACAAATGTGGAAAggaatttaaattgaaaataatgttaaaacgcCATCATGACATCTGCGACAAATCGCCTCGAAAAGAGTTGATGGTATCCTTAGAGCCTATAGACTCCGTTCAGAAAACCGGGAAAATCGATTGTGAGATGTGCACAACAAAGtttaaaacaattgaaaatttGGAAAAACATATGAAAGTAGTGCACGCGGCTGTTCttaaaaaagatataattaatgaaaataaaaaagtagttgTCCCTTGTTTATACTGTGGTTTATCTTTTGAGGATTATAACCTCCATAACGCTCACTTCAACATATGTCCTCAAAAAAGCGACATTAGTACTTTTGAATGCCCCATTTGTAAAAGAGTAATAACAAAAAAAGGATGTTATTTCTTACACCTTAAAGCGCATTTTTTTCCAATGTCATCGACGAAATTGTTAACAGAAGTAGCAACTAAACAAGACGGCTTTCAATGCCGTATGTGTAGTAAGAGACTACCAAATCAAGATTCGTTGATTACTCATCTGGCTGCGCACATGTCTAATATCGACGACGCCGATGAAGGTGGCGACGAAGAATCAAGggcAAGCACAATAGACGATTCAGCATCAGTACATTCTGAATTCAGTACAAATATTTCGAGTGGACCTTTAAAATGCAAAACTTGCGATAAatcatttacatataaaaaagctCTGTTAACACATGAGCTAAAACATTCACACGGTGCTATAAAAATGGAGGCTCTGGAAAAGGATAATTcttcaagttttttaaatgaaactacCACTTCTTTAAAGCGTTATGAATCGGAATCTAGTCAGGATGAGGGCGAAGATGACAATACTTGTGACATTTGCGAAAAACAATTCTCATACAAGAGACTACTTCTGCAACATAAAAGAACCAAACATCCTATGACTGCAGGCTTCAAGCGAGCCAAGATCAATCTAAAAGATTGTTCTGTCCGGTGTTTGATATGCGATATTGAAATGAAAGTCAGTGCGATTAACGAACACAATCAGACGCATATATCAGTCAATATAAAACCAAGAAATTTGTATACGTGTATGGAGTGTGAACAGCAATTCAAGAGCTGCAGTGCGCTGGCGAATCACATAAAATTCGTGCACCGGCTTAAACAACCGCAAGCTAAAATTGATGCGCCGCCAGCGGATTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGGCGGAACCCCTGGACGTGCTCCAGAGTCACAACGGCTTTGGTGAGGTTTCCGTCAACGATGGACCACTGGTCAACATGAGTGGCTTTACATGCCCCATTTGTAATAAGCAATTACCAACCTTGATATCTCTCAAAAGACACGTCAACTGGCATAACCATGTCGGGAAAAGCATGGAGAAACGGCTCGAGTGTTTTGTTTGTAAGGAGACTTTCCGGTTTCAGTGTCATTATAAGATACATATGCGTGAACACTACAATGATACTAATCTCGATCCAAAACTGCTGACTTGCTCCATCTGCAATCGTAAGAGTAAACATCTGCGCGCTGCTCAAGCGCATATGAATTATCATAAACAAacacgttttaaaaataaagattacgAATGCTCGATTTGCAAAAGGGTTTTCCAACATCGTAAAGTCTACCTCTCACATATGGCAATACATTATAAGCGTGGTGAAAGCACTAATAACACTATTGTGGGGAGTGTGCTACCTAACTCAGTGGACAAAAACAAATTTGACGGTACTCATACCTGTCATCTCTGTGGCAAGGTTTGTGATTCAGAAAACTCTCTGAAACACCATATAATTTGGCACAATTCTAAGACTTCTTTATTTGGAGCTCGACACGAATGCCATATTTGTAATTtgatatttacaaacaaaagaCGACTTGAGCTTCACACAAGGACACATTTCGAGGACGATAATGGACCTTTTAAGTGCCATATTTGTGGGAAAGGTTATATAGTTGAAGATTATTTCAAAAGACACGTAAAAGGTCATAACTTTGATCATCAATCGCATAAAAAGCGAATAGAGAAGCttagaaaaaataaagtaaagtgTCCAATTTGTGTTCGTTACTATCCAGACTTGGTAAAACTTATTCGCCACTTGCGGCGGACCCATCCAGAGAGTAAAATGATTAAAGAGGATCCCGATGCACCACCACCGAACTATTATTCTTGTAAATTGTGTGCTAAGGTATTCTTAGATGAGAGAAGATTGCAGTTCCACGAAGAAGCTCATTTGCGAAAGCCAGAATTTTTCAAATGTAAATTTTGTGGTAAAAAGACAATATCATTAAAGAATCACAGGATACATATTAAAGGTCACCTTACTCAAAAGTATATCGATAATCCACTAAAATGCCCACACTGTGACGAAAAGTTTATGCGTGGTTACGATCTACATTATCATTTACGAGACGCTCATAAAATCAATGAGACGTGGATAGAGGAGCGTGGAACCCAAACTTTAGACGGTCCACTGAAAGACCTACAATGTTCTATATGTTTTAAAGTCTTAGCCAGTAAAGGAAACTTTGAAAGACACATAGATTACCATAACTCTCTTAGATGTAATTACTGTTTCGATTACTTTAGTTCTCTCCGATTCTTGGAGGGACATCTCGCCTTCAGTTgtgaaaagaaaaaagttattgGTGACACAGAAATTTATCCGAAAAAGGTAAAGTGCCATATTTGTTACAAACCTTTCCATTTGCAAGTGAAGTTGGATTGCCACTTACGCACTCAACATAACATAAAAACGTTTACAAAAGCATCTGAGGGTAAACAGGAAATCGTTTGCGACTATTGCTTTAAAGTATTCGAAAATGAATATGCTCTCAGTACTCACAAGATTTATCACCGCACCGTCGGCTACTACGGCTGCATCTATTGTAACAGGAAGTTTAATACGATGACAGCTTATAGGAAACATAAAAATCACCATTTTTCCCAATTAAATGTAGACAATCCAACGAAATGTGAACATTGTGAGGAGACATTTGTAGCTTTCAGAGAAATGATATATCATATGAGGGACGTTCACGGTGATGACAAAGAATGGATTATTCTACCAAAAGAATCTATCGAGGAAAAGTGTAATATTTGTCAGAAAACATTCTTCAATTTACACAGACATTTAGATTATCACGAAGAAAATAGATGCAAAAAATGTGGCGAGTATTTCTACTCTCGAGCAGATTTCGATAACCATCTCTGCGCTATCGATAGCGATGAGGAAGTCACTGAAACTAATACTAATGCCGTTCGGCCTATATATGAAGAATGTAGCTTCTGTTTCAAACCAGTGACCAGAAAAAACTCAAAACGTTTACACGATCAAATCCACAGAGGGTCTGGTTCTATATCGTGTCGTTTCTGTACtctcaaatttaaaacaatggaCGCTTTCAACATTCATGCGTTTTCGCATCGAAGTAGGAAATACAAAAAGAAACCGATCAAGTGCCGCCAGTGTGGAGAACAATTCGTAAAGTACGGTCCGTTTATAAAACACATGAAATTCGTTCACAAGTGTTCTAAGAAACTCCACTACAGAGCCACGGTGATGCCAGAAAAGTGTGTCGTCTGTAACGATGATTTCCCTAATCTACACAATCACTACCGCGCTCACCTACAAAATCAGTGCCAGCAATGTCTCAAATATTTCACATCGTCTAAAGCGTTTTCTTTACATGAATGCGACAAAGAGGATGCAGATCCATCTAAAGTGTTCACAAGTGATGCTAATTTACCAGCTCTTATTAATTCCTACATACCAAAAGATGAAAAAGATGACGAGAAGTATTACGGGCACGAGGAGGACGAGGAAGACGAACGAGCTAATGTGGAGACGGTGACGCCGGACGAAGACAGTCAGGCCTCCGTCGACATCGACGAAGGAAAGGTTCACAACATGGTGCACGCGCCGATCATATCCGACGTTCTGTCGCTTTACCAGAAGAAGgaagttaaaacaaaatgtgAAAGTCGAAACGATGAACTAAATGGTGTTAGTGGTAATATTGTGGTTCTAACTGATGAAGATTCTATAGGTTTTGAGGATAATGTACCTGTTATTACGATAGATGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNNLQLAEMVMECARVKIFEGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSSPTPPNRQSSDSAFSSQTEVSKPSSSFESKVTPVSRSRKRSGDSIDDASTSSRSRDYQPGSSKRVDQLRMSQKKPKLSINSDSDYDDNSASFYSAETDSDEPLLHKCEQCGKAFRTSTSLVAHAKCHKRKNALNKLQTDKNTSVESPKEIKDAADEDDKLSCDKCGKEFKLKIMLKRHHDICDKSPRKELMVSLEPIDSVQKTGKIDCEMCTTKFKTIENLEKHMKVVHAAVLKKDIINENKKVVVPCLYCGLSFEDYNLHNAHFNICPQKSDISTFECPICKRVITKKGCYFLHLKAHFFPMSSTKLLTEVATKQDGFQCRMCSKRLPNQDSLITHLAAHMSNIDDADEGGDEESRASTIDDSASVHSEFSTNISSGPLKCKTCDKSFTYKKALLTHELKHSHGAIKMEALEKDNSSSFLNETTTSLKRYESESSQDEGEDDNTCDICEKQFSYKRLLLQHKRTKHPMTAGFKRAKINLKDCSVRCLICDIEMKVSAINEHNQTHISVNIKPRNLYTCMECEQQFKSCSALANHIKFVHRLKQPQAKIDAPPADLADFCEVVVTKAEPLDVLQSHNGFGEVSVNDGPLVNMSGFTCPICNKQLPTLISLKRHVNWHNHVGKSMEKRLECFVCKETFRFQCHYKIHMREHYNDTNLDPKLLTCSICNRKSKHLRAAQAHMNYHKQTRFKNKDYECSICKRVFQHRKVYLSHMAIHYKRGESTNNTIVGSVLPNSVDKNKFDGTHTCHLCGKVCDSENSLKHHIIWHNSKTSLFGARHECHICNLIFTNKRRLELHTRTHFEDDNGPFKCHICGKGYIVEDYFKRHVKGHNFDHQSHKKRIEKLRKNKVKCPICVRYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPNYYSCKLCAKVFLDERRLQFHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKGHLTQKYIDNPLKCPHCDEKFMRGYDLHYHLRDAHKINETWIEERGTQTLDGPLKDLQCSICFKVLASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCEKKKVIGDTEIYPKKVKCHICYKPFHLQVKLDCHLRTQHNIKTFTKASEGKQEIVCDYCFKVFENEYALSTHKIYHRTVGYYGCIYCNRKFNTMTAYRKHKNHHFSQLNVDNPTKCEHCEETFVAFREMIYHMRDVHGDDKEWIILPKESIEEKCNICQKTFFNLHRHLDYHEENRCKKCGEYFYSRADFDNHLCAIDSDEEVTETNTNAVRPIYEECSFCFKPVTRKNSKRLHDQIHRGSGSISCRFCTLKFKTMDAFNIHAFSHRSRKYKKKPIKCRQCGEQFVKYGPFIKHMKFVHKCSKKLHYRATVMPEKCVVCNDDFPNLHNHYRAHLQNQCQQCLKYFTSSKAFSLHECDKEDADPSKVFTSDANLPALINSYIPKDEKDDEKYYGHEEDEEDERANVETVTPDEDSQASVDIDEGKVHNMVHAPIISDVLSLYQKKEVKTKCESRNDELNGVSGNIVVLTDEDSIGFEDNVPVITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079240;
- 90% Identity
- -
- 80% Identity
- -