Nurt011763.1
Basic Information
- Insect
- Nymphalis urticae
- Gene Symbol
- -
- Assembly
- GCA_905147175.1
- Location
- LR989985.1:2853404-2860750[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.00027 0.025 15.6 4.0 1 21 192 212 192 214 0.95 2 27 0.0026 0.24 12.6 0.6 2 20 242 260 241 262 0.93 3 27 3.4e-05 0.0032 18.5 0.5 3 23 289 310 287 310 0.96 4 27 3.6 3.4e+02 2.6 0.3 2 16 330 344 329 350 0.78 5 27 0.012 1.1 10.4 1.2 1 23 360 382 360 382 0.97 6 27 0.0085 0.78 10.9 0.1 1 23 403 425 403 425 0.96 7 27 0.00032 0.03 15.4 3.6 2 23 465 486 464 486 0.96 8 27 0.00052 0.048 14.7 2.2 2 23 530 552 530 552 0.97 9 27 0.00036 0.033 15.2 0.8 1 23 602 625 602 625 0.97 10 27 0.00033 0.03 15.4 0.2 1 23 681 703 681 703 0.97 11 27 0.007 0.65 11.2 5.7 2 23 715 736 714 736 0.96 12 27 0.036 3.3 9.0 1.7 2 23 748 769 747 769 0.96 13 27 0.0037 0.34 12.1 1.7 1 23 779 801 779 801 0.98 14 27 0.022 2.1 9.6 9.3 1 23 830 852 830 852 0.96 15 27 0.0049 0.45 11.7 6.2 1 23 863 885 863 885 0.98 16 27 6.5e-06 0.0006 20.7 0.5 1 23 893 915 893 915 0.97 17 27 0.0026 0.24 12.5 0.1 2 23 935 957 934 957 0.97 18 27 0.071 6.6 8.0 3.5 1 23 1004 1026 1004 1026 0.97 19 27 0.017 1.6 9.9 1.6 2 23 1037 1059 1036 1059 0.95 20 27 0.0007 0.064 14.3 0.3 2 23 1082 1103 1081 1103 0.95 21 27 0.0021 0.2 12.8 0.2 2 23 1184 1205 1183 1205 0.95 22 27 3.9 3.6e+02 2.6 4.2 5 23 1215 1233 1212 1233 0.94 23 27 0.013 1.2 10.4 0.8 2 23 1244 1266 1243 1266 0.95 24 27 0.96 88 4.5 4.2 2 23 1283 1301 1283 1301 0.89 25 27 2 1.9e+02 3.5 1.7 2 21 1305 1324 1305 1325 0.93 26 27 0.41 38 5.6 0.9 2 23 1374 1395 1373 1395 0.93 27 27 0.01 0.95 10.7 0.6 2 23 1406 1428 1405 1428 0.94
Sequence Information
- Coding Sequence
- ATGGCTCTCAAGCTTGGAAAATGCAGACTATGTCTCAAGCTCGGAGACTTCTATTCCATCTTTACGGTGGACAACAACTTACAACTCGCCGAAATGGTTATGGAATGTGCCCGGGTTAAAATATACGACGGCGATGGGTTACCAGATAAAATTTGCAGCGAATGTATTCAAAAACTCAGTAGCGCTCATATATTTAAACAACAATGCGAACGATCTGATCAAGAGTTGAGACGCAACTATATTCCTCCGACAGGCTTCAGTTCACCAACACCACCCAACAGACAGAGCAGTGATTCAGCATTTTCGTCACAAACTGAACTTTCTAAGCCATCATTGACATTCGAAAGCAAAGTAACACCCGTTAGTAGATCTCGTAAGCGAAGCGGTGACAGTGTTGACGATGCGTCTATAAGCAGCCGTTCTCACGATTACCGACCTGGAAGTTCTAAACGCGTCGACGAACTGCGAATGTCTCAGAAGAAGCCTAGGCTTTCGATTAATTCGGATTCTGATTACGACGACAACAGCGCCTCATTTTATTCAGCTGAAACCGACTCCGACGAACCGTTACTACACAAATGCAAACAATGCGGTAAAGCATTCAAGACCGTCATCAGTTTAACAGCTCATATGAAATGTCACAAACGAAAAAATGCATTGAAGAATTTATCTTTAGCCGCCCCGAAAGAAATAAAAGATGCAACAGATGAAGAGGATAAACTATCGTGTGATAAATGCGGAAAGGATTTCAAATTGAAAATAATGTTAAAACGCCACCACGATATCTGCAGCAAATCTCCTCGAAAAGAATTAATGGTATCATTGGAGCCGATCGATGCAATACAGCAAGCGGTAAAAATAGATTGTCAAATGTGCACAACAAAGTTCAAGACGGTCGAGAACTTGGAGAAGCACATGAGGGTTGTGCACGCAGCTGTCCTGAAGAGGGATAGTTCATCGAGCAACGAAAATGGAAAAATATGCGTACCTTGTTTGTATTGCGGTCAGCCATTTGACGATTATTTTAACCATAGCGCTCACTTCAACAAGTGCCCTCAAAAGAATAATCTCGCCACTTTTGAATGCCCTGTTTGTACAAAAGTTATAACTAAAAAGGGATGTTATTTCTTACACATTAAAGCTCATTTTTTTCCCATGTCGTCTACTAAATCGTCTTCTTTACAAGAAACAGCGAAGCAGGAAGACTTTCAGTGTCGTATGTGTAACATGAAATTGCCTAGCCAAGATTCGTTGATAACTCACTTAGCTGCTCACATGTCTAATATGGACGAAGCGGATGAAGGTGGTGACGAGGAGTCTAGAGCAAGCACAATAGACGATTCAGTTTCAGTACATTCCGAATACAGTTCAAATATTTCGAGTGGACAATTAAAATGCAAAACTTGTAATAAATCATTTAAATACAAAAAATCTTTATTGACACACGAAGAAAAACATTCTCATGATGATAAAATTAAAATGGAAACGCCGGACAGGAACAATTCGACAGACTTGTTAAACGAAACTACTAAGTCGTTGAACCAGTACGAGTCAGAATCGAGCCAAGAGGAAGGCGAAGAAGATAATACCTGTGATATTTGCGAAAAGCAATTCTCATATAGAAGACTACTTTTACAGCACAAACGAACCAAACATCCGATGACTGCAGGGTTTAAACGAGCTAAGATTAATTTGAAAAATTGTTCCGTTCGGTGTTTGATATGCGACATTGAAATGAAAGTGAGTGATATTAACGAACACAATCAGACACATATATCTGTTAACATTAAACCGAGAAATTTATACACGTGTATGGAATGCGAAGAGCAATTTAAGAGTTGCAGTGCGCTGGCAAATCACATTAAATTGGTGCACAGGCTAAAGCAACAGCCAAGTAAGATCAATGCACCGCCAGCTGATTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAACCCCTGGACGTGCTCCAGAGTCACAACGGCTTTGGTGAGGTTTCCGCTATCGATAGTTCACCCTCGGTCAACATGAGTGGCTTTACTTGTCCAATTTGTAACAAACAATTGCCAACGTTGATATCTCTGAAAAGACACGTGAACTGGCATAATCATGTTGGGAAAAGCATGGAAAAGAAGTTGGAATGCTTTGTTTGTAAGGAGACTTTCCGGTTTCAGTGTCATTATAAGATCCACATGCGTGAACATTACAACGACACTAATCTCGATCCAAAATTGCTAACTTGCTCGATCTGTAATCGCAAGAGCAAACACCTCCGTGCGGCCCAGGCGCACATGAACTACCACAAGCAGACACGTTTTCAAAATAAAGACTACGAGTGCTCGATTTGCAAGAGAGTGTTCCAGCATCGCAAAGTTTATCTCTCACACATGGCTATTCATTACAAACGCGGCGAGAGCGCCAATAATACAATTGTGGGGTGTGTGCTACCCAACTCGGTCGATAAAAATAAATTTGACGGCACCCACACCTGTCATCATTGTGGCAAAATTTGCGATTCGGAAAACTCGCTTAAACATCATATAAGTTGGCACAATTCTAAGACGTCGTTATTTGGTGCTCGACACGAATGTCATTTTTGTGATTTGCAGTTCACGAACAAGAGAAGATTAGAACTTCACACCAGAACACACTTCGAAGACGATAACGGCCCTTTTAAGTGTAATATTTGTGGCAAAGGTTTCATTGATGAAGATTATTACAAGAGACACGTAAAAGGCCATAACTTTGATCATCAGTCGCATAAGAAACGAATAGAAAAGCTTAGGAAGAACAAAGTGAAGTGTCCGATATGTGCTCGTTACTATCCCGACTTAGTAAAACTCATTCGCCACTTGCGGCGGACCCATCCCGAGAGTAAAATGATAAAGGAGGATCCGGACGCACCACCTCCAAGCTATTATTCATGTAAATTGTGTGCTAAAGTTTTCTTAGACGAAAGAAGATTACAATTTCACGAAGAAGCTCACCTGCGGAAGCCAGAATTTTACAAATGTAAATTCTGTGGCAAAAAGACGATATCATTGAAAAACCATAGGATCCATATTAAAGGTCATCTCACGCAAAAGTATATCGATAATCCATTGAAATGTCCACATTGCGTCGAAACATTTATGCGTGGTTACGATTTACATTACCATTTGCGGGACGCTCATGACATTAACGAGACATGGATAGAGGAACGACGTAGTCAGACATTGGACGGACCCTTAAAAGAGCTACAATGTTCAATATGTTTCAAGGTCTTAGCCAGCAAAGGGAATTTTGAAAGACATATTGATTACCACAATTCTCTAAGATGTAATTATTGCTTTGATTACTTTAGCTCTTTGAGATTCCTGGAGGGGCATCTCGCGTTCAGTTGTGACAAAAAGAAGCTTATCGGCGACACAGAAGTTTACCCGAAAAAAGTCAAGTGCCATGTTTGTTATAAAGCATTCCATTTGCAAGTGAAATTAGATTGTCATTTGCGTACCCAACACGGAATAAAAACGTTTAAAAAAGAATCCGAAGGAAAACAAGAAATCGTTTGCGATTATTGCTTTAAAGTTTTTGAAAATGAATATGCTCTCAGCACTCATAAAATATATCACCGGACAGTCGGCTACTATGGATGCATATATTGTAGTAGGAAGTTTAACACAATGACGCTGTATAGGAAACACAAGAATCATCACTTCTCCCAGCTGAACGTCGATAATCCAACGAAATGTGAGCATTGTGATGAGACATTCGTTGCGTTCAGAGAAATGATATATCACATGAGAGATGTTCACGGGGACGATAAAGAATGGGTTGTCCTACCAAAAGAATCGATAGAAGAAAAATGTAATATTTGTCAGAAAACATTCTTCAATTTACACAGACATTTAGATTATCATGAAGAAAACCGGTGCAAGAAATGTAGCGAGTACTTCTTTTCCCGAGCGGACTATGATAATCACCTTTGTGCGATCGACAGCGACGAGGAAGTCACTGAAACTAATACGAACGGCGTTCGGCCTGTATACGAAGAATGTAGTTTCTGTTTCAAACCTGTAACTCGAAAAAACTCAAAGCGTTTACACGATCAAATCCATCGAGGATCTGGTTCTATCTCATGCCGCTTCTGCTCACTTAAGTTTAAAACCATGGATGCTTTCAATATTCATGCATTTTCGCATAGAAGTAGAAAATATAAGAAAAAACCAATAAAATGTCGCAAGTGCGGCGAGCAGTTTGTGAAGTATGGTCCGTTCATAAAACATATGAAGTTTGTTCATAAGTGTTCTAAGAAGCTTCACTACAGAGCCACAGTGATGGCTGAGAAGTGCATTGTTTGTAATGAAGATTTTCCCAATTTACATAACCACTACCGCGCCCATTTGCAAAATCAATGTCAGCAATGTCTCAAATATTTTACTTCATCTAAAGTGTTTTCTCTCCATGAATGCGATAAAGAAGATTCGGAGCCGTCTAAAGTCTTTATATGTGACGCTAACTTACCGGCGCTTATTAATTCTTATGTACCAAAAGATGAAAAAGACGATGAGAAATATTACGGTCACGAAGAGGAGGAAGAAGATGAGATAGGAAACCAAGAGACGGTGACGCAAGATGAAGACAGTCAGAATTCTATCGACATTGACGAAGGAAACGTGCATGATATGGTGCACGTACCAATTATATCCGATGTGTTGTCGCTTTTTAAGAAAAAAGAAGTTACGAGCAAATGCAAAGTTGAAAACAATGGACAAAACAGTGTTAGTGGTAACATTGTGGTTCTTACTGATGATGATTCTATAGGTTTTGAGGAAAATGTACCTGTTATAACGATAGATGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNNLQLAEMVMECARVKIYDGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYIPPTGFSSPTPPNRQSSDSAFSSQTELSKPSLTFESKVTPVSRSRKRSGDSVDDASISSRSHDYRPGSSKRVDELRMSQKKPRLSINSDSDYDDNSASFYSAETDSDEPLLHKCKQCGKAFKTVISLTAHMKCHKRKNALKNLSLAAPKEIKDATDEEDKLSCDKCGKDFKLKIMLKRHHDICSKSPRKELMVSLEPIDAIQQAVKIDCQMCTTKFKTVENLEKHMRVVHAAVLKRDSSSSNENGKICVPCLYCGQPFDDYFNHSAHFNKCPQKNNLATFECPVCTKVITKKGCYFLHIKAHFFPMSSTKSSSLQETAKQEDFQCRMCNMKLPSQDSLITHLAAHMSNMDEADEGGDEESRASTIDDSVSVHSEYSSNISSGQLKCKTCNKSFKYKKSLLTHEEKHSHDDKIKMETPDRNNSTDLLNETTKSLNQYESESSQEEGEEDNTCDICEKQFSYRRLLLQHKRTKHPMTAGFKRAKINLKNCSVRCLICDIEMKVSDINEHNQTHISVNIKPRNLYTCMECEEQFKSCSALANHIKLVHRLKQQPSKINAPPADLADFCEVVVTKAEPLDVLQSHNGFGEVSAIDSSPSVNMSGFTCPICNKQLPTLISLKRHVNWHNHVGKSMEKKLECFVCKETFRFQCHYKIHMREHYNDTNLDPKLLTCSICNRKSKHLRAAQAHMNYHKQTRFQNKDYECSICKRVFQHRKVYLSHMAIHYKRGESANNTIVGCVLPNSVDKNKFDGTHTCHHCGKICDSENSLKHHISWHNSKTSLFGARHECHFCDLQFTNKRRLELHTRTHFEDDNGPFKCNICGKGFIDEDYYKRHVKGHNFDHQSHKKRIEKLRKNKVKCPICARYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPSYYSCKLCAKVFLDERRLQFHEEAHLRKPEFYKCKFCGKKTISLKNHRIHIKGHLTQKYIDNPLKCPHCVETFMRGYDLHYHLRDAHDINETWIEERRSQTLDGPLKELQCSICFKVLASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLIGDTEVYPKKVKCHVCYKAFHLQVKLDCHLRTQHGIKTFKKESEGKQEIVCDYCFKVFENEYALSTHKIYHRTVGYYGCIYCSRKFNTMTLYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWVVLPKESIEEKCNICQKTFFNLHRHLDYHEENRCKKCSEYFFSRADYDNHLCAIDSDEEVTETNTNGVRPVYEECSFCFKPVTRKNSKRLHDQIHRGSGSISCRFCSLKFKTMDAFNIHAFSHRSRKYKKKPIKCRKCGEQFVKYGPFIKHMKFVHKCSKKLHYRATVMAEKCIVCNEDFPNLHNHYRAHLQNQCQQCLKYFTSSKVFSLHECDKEDSEPSKVFICDANLPALINSYVPKDEKDDEKYYGHEEEEEDEIGNQETVTQDEDSQNSIDIDEGNVHDMVHVPIISDVLSLFKKKEVTSKCKVENNGQNSVSGNIVVLTDDDSIGFEENVPVITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079240;
- 90% Identity
- iTF_01079240;
- 80% Identity
- -