Npol007711.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- -
- Assembly
- GCA_905220585.1
- Location
- HG992246.1:12877300-12890181[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.00069 0.061 14.3 4.2 1 21 192 212 192 214 0.95 2 27 0.0025 0.22 12.6 0.6 2 20 242 260 241 262 0.93 3 27 3.5e-05 0.0031 18.4 0.5 3 23 289 310 287 310 0.96 4 27 5.3 4.7e+02 2.1 0.2 2 20 330 348 329 350 0.82 5 27 0.11 9.7 7.4 0.6 1 23 360 382 360 382 0.96 6 27 0.00043 0.038 15.0 0.3 1 23 402 424 402 424 0.98 7 27 0.00025 0.022 15.7 3.4 2 23 464 485 463 485 0.96 8 27 0.00017 0.015 16.2 2.6 2 23 529 551 529 551 0.97 9 27 0.00078 0.069 14.1 1.3 1 23 601 624 601 624 0.96 10 27 0.0018 0.16 13.0 0.2 1 23 680 702 680 702 0.97 11 27 0.0068 0.6 11.2 5.7 2 23 714 735 713 735 0.96 12 27 0.035 3.1 9.0 1.7 2 23 747 768 746 768 0.96 13 27 0.0043 0.38 11.8 0.7 1 23 778 800 778 800 0.98 14 27 0.0017 0.15 13.0 9.8 1 23 829 851 829 851 0.97 15 27 0.0012 0.11 13.5 5.5 1 23 862 884 862 884 0.98 16 27 4.6e-06 0.00041 21.2 0.4 1 23 892 914 892 914 0.98 17 27 0.0026 0.23 12.5 0.1 2 23 934 956 933 956 0.97 18 27 0.1 9.1 7.5 3.7 1 23 1003 1025 1003 1025 0.97 19 27 0.017 1.5 9.9 1.6 2 23 1036 1058 1035 1058 0.95 20 27 0.0019 0.17 12.9 0.3 2 23 1081 1102 1080 1102 0.95 21 27 0.002 0.18 12.8 0.2 2 23 1183 1204 1182 1204 0.95 22 27 1.7 1.5e+02 3.7 4.1 5 23 1214 1232 1211 1232 0.94 23 27 0.012 1.1 10.4 0.8 2 23 1243 1265 1242 1265 0.95 24 27 1.1 93 4.3 3.8 2 23 1282 1300 1282 1300 0.89 25 27 6.1 5.4e+02 1.9 1.1 2 21 1304 1323 1304 1324 0.92 26 27 0.4 35 5.6 0.9 2 23 1373 1394 1372 1394 0.93 27 27 0.0099 0.88 10.7 0.6 2 23 1405 1427 1404 1427 0.94
Sequence Information
- Coding Sequence
- ATGGCTCTCAAGCTTGGAAAATGCAGACTATGTCTCAAGCTCGGAGACTTCTATTCCATCTTTACGGTGGACAACAACTTACAACTCGCCGAAATGGTTATGGAATGTGCCCGGGTTAAAATATACGACGGCGACGGGCTACCAGATAAAATTTGCAGTGAATGTATTCAAAAACTTAGTAGCGCTCATATATTTAAACAACAATGTGAGCGATCTGATCAAGAGTTGAGACGCAACTATGTTCCTCCGCCAGGCTTCAGTTCACCAACACCACCCAACAGACAGAGCAGTGATTCAGCATTTTCGTCACAAACTGAAGTTTCTAAACCATCATCGACATTCGAAAGCAATGTAACACCCGTTAGTAGATCCCGTAAGCGAAGCGGTGATAGTGTTGACAATGCATCTATAAGCAGCCGTTCTCACGATTACCGACCCGGAAGTTCTAAACGCGTCGACGAACTACGAATGTCTCAGAAGAAGCCTAGGCTTTCAATTAATTCGGATTCAGATTACGATGACAACAGCGCTTCATTTTATTCAGCTGAAACTGACTCTGACGAACCGTTACTACACAAATGCAAACAATGCGGTAAAGCGTTCAGGACTGTCCTGAGTTTAACAGCTCATATGAAATGTCACAAACGAAAAAATGCATTGAAGAATTTATCTTTAGCCGCCCCGAAAGAAATAAAAGATGCTACAGATGAAGAGGACAAACTATCGTGTGATAAATGCGGAAAGGATTTTAAATTAAAAATAATGTTAAAGCGCCATCACGATATTTGCGGGAAATCTCCTCGAAAAGAATTAATGGTATCATTGGAGCCGATCGACGCAGTACAGCAAGTGGTAAAAATAGATTGTCAAATGTGCACAACAAAGTTCAAGACAGTCGAGAATTTGGAGAAGCACATGAGGATTGTGCACGCAGCTGTTCTGAAGAGGGATAATTCATTGAGCAACGAAAATGGAAAAATATGTGTACCTTGTTTGTTTTGCGGTCAGCCTTTTGACGATTATTATAACCATAGCGCTCACTTCAATACATGCCCGCAAAAAAATAATCTAGCCACTTTTGAATGCCCTGTTTGTACAAAAATTATAACTAAAAAGGGATGTTATGTCTTACATGTTAAAGCGCATTTTTTTCCCATGTCGTCTACTAAATCTGTACAAGAAACAACAGCTAAGCAAGAAAACTTTCAGTGCCGTATGTGTAACAAGAAATTGCCTAGCCAAGATTCGTTGATAACTCATCTAGCTGTTCACATGTCTAATATGGACGAGGCGGACGAAGGCGGTGACGAAGAGTCGAGAGCGAGCACAATAGACGATTCAGCATCAGTACATTCCGAATACAGTTCAAATATTTCAAGTGGACCATTAAAATGTAAATTTTGTGATAAATCATTTAAATACAAGAAATCGTTATTGACACACGAAGAAAAACACACTAATGATGATAAAATTAAAATGGAAACACCGGACATGAACAATTCGACAGATTTGTTAAACGAAACTACTAAGTCCGTGAACCAGTACGAATCAGAATCGAGCCAAGACGAAGGCGAAGAAGATAATACCTGTGATATTTGCGAAAAGCAATTCTCATACAAAAGACAACTTTTGCAGCATAAACGAACCAAACATCCTATGACTTCAGGGTTTAAGCGAGCTAAGATTAATTTGAAAAATTGTTCGGTTCGGTGTTTGATATGCGATATTGAAATGAAAGTGAGTGATATTAACGAACACAATCAGACACATATATCAGTTAACATTAAGCCGAGAAATTTATACACGTGTATGGAATGCGAAGAGCAGTTTAAGAGTTGCAGTGCGCTGGCAAATCACATTAAATTTGTGCACAGGCTAAAGCAACAGCCAAATAAAATTAAAGCACCGCCAGCAGATTTGGCGGATTTTTGTGAAGTCGTTGTGACGAAAGCGGAACCCCTGGACGAGCTCCAGAGTCACAACGGCTTTGGTGAGGTTTCCGCTACCGATGGTTCACCCTCGGTCAACATGAGTGGCTTTACTTGTCCAATTTGTTACAAACAATTGCCAACGTTGATATCTCTCAAAAGGCACGTGAACTGGCATAATCATGTTGGGAAAAGCATGGAGAAGAAGTTGGAATGTTTTGTTTGTAAAGAGACTTTCCGGTTTCAGTGTCATTATAAGATCCACATGCGTGAACACTACAATGACACAAATCTTGATCCAAAATTGCTAACATGCTCGATCTGTAATCGCAAAAGCAAACACCTCCGTGCGGCCCAGGCACACATGAACTACCACAAGCAGACACGTTTTAAAAATAAAGACTATGAGTGCTCGATTTGCAAGAGAGTGTTCCAGTATCGTAAAGTTTATCTCTCACACATGGCTATTCATTACAAACGCGGTGAGAGCGCCAATAATACAATTGTGGGCTTTGTGCTACCCAACTCGGTCGATAAAAATAAATTTGACGGCACGCATACCTGTCATCACTGTGGTAAAGTTTGCGATTCGGAAAACTCGCTTAAACATCATATAAGGTGGCACAATTCCAAGACGTCGTTATTTGGTGCTCGACACGAATGTCATATTTGTAATTTACAGTTCACCAACAAGAGAAGATTAGAACTTCACACCAGAACACATTTCGAAGACGATAATGGCCCTTATAAGTGTAATATTTGTGGAAAAGGTTTCATAGATGAAGATTATTACAAGAGACACGTAAAAGGCCATAACTTTGATCACCAATCGCATAAAAAACGAATAGAAAAGCTTAGGAAAAACAAAGTGAAGTGTCCGATATGTGCTCGTTACTATCCCGACTTAGTAAAACTCATTCGCCACTTGCGGCGGACCCATCCTGAGAGTAAAATGATTAAGGAGGATCCGGACGCACCACCTCCAAGTTATTATTCTTGTAAATTGTGTGCTAAAGTTTTCTTAGACGAAAGAAGATTACAATTTCATGAAGAAGCTCACCTGCGGAAGCCAGAATTTTTCAAATGTAAATTCTGCGGCAAAAAGACGATATCATTGAAAAACCATAGGATCCATATTAAAGGTCATCTCACCCAAAAGTATATTGATAATCCATTGAAATGTCCACACTGCGTTGAAACATTTATGCGTGGTTACGATTTACATTACCATTTGCGGGACGCTCATGACATTAATGAGACATGGATAGAGGAGCGACGTAGTACGACATTGGACGGTCCTTTAAAAGAGCTACAGTGTTCAATATGCTTCAAGATCTTAGCCAGCAAAGGTAACTTTGAAAGACATATTGATTACCACAACTCTCTAAGATGTAATTATTGCTTCGATTACTTTAGCTCTTTGAGATTCCTGGAGGGGCATCTTGCATTCAGTTGCGACAAAAAGAAACTTATCGGTGACACAGAAATTTACCCGAAAAAAGTTAAGTGCCATGTTTGTTACAAAGCTTTCCATTTGCAAGTGAAATTAGATTGTCATTTACGCACCCAACATGGAATAAAAACGTTTAAAAAAGCATCCGAAGGAAAACAAGAAATTGTTTGCGATTATTGCTTTAAAGTTTTTGAAAATGAATATGCACTCAGCACTCACAAAATCTATCACCGTACAGTCGGCTACTATGGCTGTATATATTGTAGTCGGAAGTTTAGTACAATGACGTTATATAGGAAACATAAAAATCATCACTTCTCTCAGCTAAATGTCGATAACCCGACGAAATGTGAGCATTGCGATGAGACTTTCGTTGCGTTCAGAGAAATGATATATCACATGAGAGATGTTCACGGAGACGATAAAGAATGGGTTGTCCTACCAAAAGAATCGATAGAAGAAAAATGTGATATCTGTCAGAAAACATTCTTCAATTTACACAGACATTTAGATTATCACGAAGAAAACCGGTGCAAAAAGTGTGCCGAGTACTTCTTTTCCCGAGCAGATTATGATAATCATCTTTGTGCTATCGACAGCGATGAGGAAGTCACTGAAACTAATACTAATGGCGGTCGGACTGTATACGAAGAATGTAGTTTCTGTTTCAAACCTGTAACTCGAAAAAATTCAAAGCGTTTACATGATCAAATCCATCGAGGATCTGGTTCTATTTCATGCCGTTTCTGCTCACTTAAGTTTAAAACCATGGATGCTTTCAATATTCATGCGTTTTCGCATAGAAGTAGAAAATATAAGAAAAAACCAATAAAATGTCGCAAGTGCGGCGAGCAGTTTGTGAAGTATGGCCCATTCATAAAACATATGAAGTTCGTTCATAAGTGTTCTAAGAAGCTTCACTATAGAGCCACAGTGATGGCTGAGAAGTGCATTGTTTGCAATGAAGATTTTCCCAATTTACATAACCATTACCGCGCCCATTTGCAAAATCAGTGTCAGCAATGTCTCAAATATTTCACTTCATCTAAAGTGTTTTCTTTCCATGAATGCGACAAAGAAGATTCAGACCCGTCTAAAGTCTTTATATGTGACGCTAACTTACCGGCGCTTATTAATTCTTACGTACCAAAAGATGAAAAAGACGATGAGAAATATTACGGCCACGAAGAAGAAGATGATAGGGAAGAGGAAGAAGAGAGAGTGAACCAAGAGATGGTGACGCAAGATGAAGACAGTCAGAATTCTATCTACATTGAGGAAGGAAATGTGCATGATATGGTGCATGCTCCAATTATATCCGATGTGTTGTCGCTTTTTAATAAAAAAGATGTTAAAAGCAAATGCAATGTTGAAGACAATGGACAACATAGTGATAGTGGTAACATTGTGGTTCTTACCGATGATGATTCTATAGGTTTTGAGGAAAATGTACCTGTTATAACGATAGATGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNNLQLAEMVMECARVKIYDGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSSPTPPNRQSSDSAFSSQTEVSKPSSTFESNVTPVSRSRKRSGDSVDNASISSRSHDYRPGSSKRVDELRMSQKKPRLSINSDSDYDDNSASFYSAETDSDEPLLHKCKQCGKAFRTVLSLTAHMKCHKRKNALKNLSLAAPKEIKDATDEEDKLSCDKCGKDFKLKIMLKRHHDICGKSPRKELMVSLEPIDAVQQVVKIDCQMCTTKFKTVENLEKHMRIVHAAVLKRDNSLSNENGKICVPCLFCGQPFDDYYNHSAHFNTCPQKNNLATFECPVCTKIITKKGCYVLHVKAHFFPMSSTKSVQETTAKQENFQCRMCNKKLPSQDSLITHLAVHMSNMDEADEGGDEESRASTIDDSASVHSEYSSNISSGPLKCKFCDKSFKYKKSLLTHEEKHTNDDKIKMETPDMNNSTDLLNETTKSVNQYESESSQDEGEEDNTCDICEKQFSYKRQLLQHKRTKHPMTSGFKRAKINLKNCSVRCLICDIEMKVSDINEHNQTHISVNIKPRNLYTCMECEEQFKSCSALANHIKFVHRLKQQPNKIKAPPADLADFCEVVVTKAEPLDELQSHNGFGEVSATDGSPSVNMSGFTCPICYKQLPTLISLKRHVNWHNHVGKSMEKKLECFVCKETFRFQCHYKIHMREHYNDTNLDPKLLTCSICNRKSKHLRAAQAHMNYHKQTRFKNKDYECSICKRVFQYRKVYLSHMAIHYKRGESANNTIVGFVLPNSVDKNKFDGTHTCHHCGKVCDSENSLKHHIRWHNSKTSLFGARHECHICNLQFTNKRRLELHTRTHFEDDNGPYKCNICGKGFIDEDYYKRHVKGHNFDHQSHKKRIEKLRKNKVKCPICARYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPSYYSCKLCAKVFLDERRLQFHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKGHLTQKYIDNPLKCPHCVETFMRGYDLHYHLRDAHDINETWIEERRSTTLDGPLKELQCSICFKILASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLIGDTEIYPKKVKCHVCYKAFHLQVKLDCHLRTQHGIKTFKKASEGKQEIVCDYCFKVFENEYALSTHKIYHRTVGYYGCIYCSRKFSTMTLYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWVVLPKESIEEKCDICQKTFFNLHRHLDYHEENRCKKCAEYFFSRADYDNHLCAIDSDEEVTETNTNGGRTVYEECSFCFKPVTRKNSKRLHDQIHRGSGSISCRFCSLKFKTMDAFNIHAFSHRSRKYKKKPIKCRKCGEQFVKYGPFIKHMKFVHKCSKKLHYRATVMAEKCIVCNEDFPNLHNHYRAHLQNQCQQCLKYFTSSKVFSFHECDKEDSDPSKVFICDANLPALINSYVPKDEKDDEKYYGHEEEDDREEEEERVNQEMVTQDEDSQNSIYIEEGNVHDMVHAPIISDVLSLFNKKDVKSKCNVEDNGQHSDSGNIVVLTDDDSIGFEENVPVITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079240;
- 90% Identity
- iTF_01078410;
- 80% Identity
- -