Hmis026152.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypolimnas misippus
Gene Symbol
-
Assembly
GCA_008963455.1
Location
JBBEEQ010000032.1:13496127-13504204[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.0042 0.37 12.1 6.2 1 21 193 213 193 215 0.95
2 28 0.005 0.44 11.9 0.2 2 19 246 263 245 266 0.94
3 28 4.5e-05 0.004 18.3 0.4 3 23 293 314 291 314 0.96
4 28 0.086 7.6 8.0 0.8 1 23 364 386 364 386 0.97
5 28 0.003 0.26 12.6 0.2 1 23 406 428 406 428 0.96
6 28 3.8e-05 0.0034 18.5 2.0 2 23 468 489 467 489 0.96
7 28 0.00039 0.035 15.3 2.3 2 23 532 554 532 554 0.97
8 28 0.0004 0.036 15.3 1.5 1 23 604 627 604 627 0.97
9 28 0.00039 0.034 15.4 0.2 1 23 683 705 683 705 0.97
10 28 0.017 1.5 10.2 4.8 2 23 717 738 716 738 0.96
11 28 0.042 3.7 9.0 1.7 2 23 750 771 749 771 0.96
12 28 0.0053 0.46 11.8 0.7 1 23 781 803 781 803 0.98
13 28 0.0054 0.48 11.8 8.5 1 23 832 854 832 854 0.96
14 28 0.00044 0.038 15.2 3.2 1 23 865 887 865 887 0.98
15 28 4.7e-05 0.0042 18.2 1.4 1 23 895 917 895 917 0.97
16 28 0.0031 0.27 12.5 0.1 2 23 937 959 936 959 0.97
17 28 0.12 11 7.5 3.7 1 23 1006 1028 1006 1028 0.97
18 28 0.0036 0.32 12.3 2.1 2 23 1039 1061 1038 1061 0.95
19 28 0.00082 0.072 14.3 0.3 2 23 1084 1105 1083 1105 0.95
20 28 8.5 7.5e+02 1.7 5.9 2 23 1148 1170 1147 1170 0.94
21 28 0.0075 0.67 11.3 0.2 2 23 1186 1207 1185 1207 0.95
22 28 1.8 1.6e+02 3.8 4.2 5 23 1217 1235 1214 1235 0.94
23 28 0.015 1.3 10.4 0.8 2 23 1246 1268 1245 1268 0.95
24 28 0.87 77 4.8 4.0 2 23 1285 1303 1285 1303 0.89
25 28 0.092 8.1 7.9 1.0 2 21 1307 1326 1307 1327 0.93
26 28 0.48 42 5.6 1.0 2 23 1376 1397 1375 1397 0.93
27 28 0.012 1.1 10.7 0.6 2 23 1408 1430 1407 1430 0.94
28 28 3.2 2.9e+02 3.0 2.7 2 19 1468 1485 1467 1488 0.92

Sequence Information

Coding Sequence
ATGGCACTTAAACTTGGAAAATGCAGACTATGTCTCAAGCTTGGCGACTTCTATTCCATCTTCACGGTGGACAACAATTTACAACTTGCCGAAATGGTTATGGAATGTGCGCGGGTTAAAATATACGAAGGCGACGGATTACCAGATAAAATTTGCAGCGAATGTATCCAAAAATTGAGCAGCGCCcatatatttaaacaacaatGCGAGCGATCGGATCAAGAGCTAAGGCGCAATTATGTGCCTCCACCAGGCTTTAGTTCACCAACACCACCCAACAGACAGAGCAGTGATTCGGCCTTTTCATCGCAAACTGAAGTTTCGAAACCTTCATCATCATTCGAAAGCAAAGTTACACCAGTCAGTAGAAACTCTCGAAAGCGAAGTGGAGACAGTGTTGATGACGTATCCATAAGCAGCCGCTCTCATGATTACCGACCAGGCAGTTCGAAACGCGTTGACCAACTACGCATGTCGCAGAAGAAACCCAGGCTATCTGCAAATTCCGATTCTGATTACGATGACAATAGTGCTTCCTTTTATTCCGCCGAGACTGACTCTGATGAACCATTACAACATAAATGTAAACAATGCGGCAAGGCATTCAGATCACACAACAGTATGGCAGCTCATATGAAATGTCACAAAAGAAAAAGTGCAATGAATAATACATCTTTTGAATCGCCGAATGAAATAAAAGAACTTAAAGATGCTGCTGATGAAGAGGATAAACTTTCGTGTGACAAATGCGGAAaggatttcaaattaaaaataatgctaAAGCGCCATAACGACATCTGCGGTAAATCGCCTAGAAAAGAATTAATGGTTTCCCTAGAGCCAATCGACGCAGTGCATAAAGTGGTAAAAATCGATTGTCAAATGTGCTCAACGAAGTTTAAAACGATCGAAAATTTGGAGAAGCATATGAGAGTAGTGCATGCAGCTGTTTTGAAAAAGGATAATAATACGCATAATGAAAACGAAAAAGTTTCAGTTCCATGTTTTTATTGCGGTCTTCCTTTCGAAGATTATTACGTCCACAGCGCCCACTTCAATATGTGCCCTGAAAAGACTAACGTTAATACGTTCGAGTGCCCTGTTTGTGCGAAAGTAATAACTAAAAAGGGATGTTACTTCTTACATCTTAAGGCACATTTTTTTCCATTAACACCAACTAAATCTACAGTTGAGGGAACTGCTAAACAGGAAAGTTTTCAATGCCGTATGTGTAATAGGAAATTGCCAAGTCAAGATTCATTAATAACTCACCTTGCTGCACACATGTCTAATATGGATGAGGCTGATGAAGGGGGCGACGAAGAATCCAGAGCAAGTACAATAGAAGATTCAGCATCAGTACACTCGGAATACAGCGGAAATATTTCGACTGGACCTTTAAAGTGCAAAATTTGcgataaatcatttaaatataaaaaatctcttGTCACACACGAGGAAAAACATATACACGGAGAAATAAAAATGGAAACACCAGACAAGAACAACTCCAAAAGCTTGTTGAATGAAACCAGTACCCCTGTGAACCAGTACGAATCGGAATCTAGTCAGGATGAAGGCGAAGAAGACAACACTTGTGATATTTGCGAAAAACAGTTCTCATACAAAAGACTACTCTTACAACATAAGCGAACTAAACATCCAATGACTGCGGGATTTAAACGAGCCAAGATCAATTTGAAAGATTGTTCTGTTCGTTGTTTAATATGTGATATTGAAATGAAAGTGAGTGCGATTAACGAACACAATCAGACACATATATCAGTTAACATGAAGCCGAGAAATTTGTACACATGTAGAGAATGTGAACAGCAATTTAAAAGTTGCAGTGCGCTGGCGAATCACATAAAACTGGTGCACAGGTTAAAGCAACAGCCGCCTAAAGTTAAGACACCACCGGCAGATTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGGCGGAACCCCTGGATGTGCTCCAGAATCACAACGGCTTTGTTGAGGTTTCCGCCAGCGATAGCACGCCCTTAGTCGACATGAGCGGCTTTACATGTCCTATTTGTAACAAACAATTGCCAACATTGATATCTCTGAAAAGACACGTCAACTGGCATAATCATGTTGGGAAGAGTATGGAAAAGCAGTTGGAATGTTTCGTTTGTAAGGagATTTTCCGATTTCAATGTCATTATAAGATCCACATGCGTGAACACTATAATGACACCAATCTTGACCCGAAGCTGCTGACTTGCTCTATTTGCAATCGTAAGAGCAAACATCTTCGTGCAGCGCAAGCGCATATGAACTACCATAAACAAAcgcgttttaaaaataaagattacgAGTGTTCGATTTGTAAAAGAGTATTCCAATATCGCAAAGTTTATCTTTCACACATGGCAATACATTACAAGCGCGGTGAGAGCGCAAATAATACCATCGTGGGATCTGTACTACCCAACACggcagataaaaataaattcgacGGAACACATACCTGCCACCACTGTGGCAAAGTTTGTGACTCAGAAAACTCCCTTAAACACCACATAATTTGGCACAAGTCCAAGACGTCCTTATTTGGAGCTCGACATCAATGTGATATTTGTAATGTGcaatttacaaataagaaaagacTAGAACTTCATACCAGAACACATTTCGAAGACGAAAATGGACCTTTTAAGTGTCATATTTGTGGGAAAGGTTTTATTGTTGAAGATTATTACAAGAGGCATGTGAAAGGCCATAATTTCGATCACCAGTCACATAAAAAGCGTATAGAGAAACTCAGGAAAAACAAAGTGAAGTGTCCCATTTGTGCTCGTTACTATCCAGACTTAGTGAAACTTATTCGTCACTTGCGACGGACCCATCCCGAGAGTAAAATGATAAAGGAAGATCCGGACGCACCGCCTCCTAACTATTTCTCTTGTAAATTGTGTGCTAAAGTCTTCTTAGACGAAAGAAGATTACAATTTCACGAAGAAGCGCATCTTAGGAAGccagaatttttcaaatgtaaattCTGTGGCAAGAAAACAATATCTTTGAAGAATCATAGAATTCATATTAAAGGTCATCTTACTCAAAAATATATCGACAATCCATTAAAGTGTCCACATTGTGATGAAAAGTTTATGCGAGGCTACGATCTGCATTACCATTTACGAGATGCACATGACATCAATGAGACATGGATAGCAGAACGAGGGACTCAGACTTTGGACGGTCCCTTAAAAGAGCTACAATGTTCTATATGTTTCAAGGTACTGGCCAGTAAAGGAAACTTTGAAAGACATATAGATTACCATAACTCTCTTAGGTGTAATTATTGTTTCGATTACTTTAGCTCTCTTAGATTTTTGGAGGGACATCTTGCATTCAGTTGTGATAAGAAAAAACTTATTGGTGATACTGAAATTTacccaaaaaaagtcaagtGCCATATTTGTTACAAAGCCTTCCATTTGCAAGTGAAATTGGATTGTCATCTACGCACCCAACAcgacataaaaacatttaaaaaagcatCAGAAGGTAAACAAGAAATTGTTTGTGATTATTGCtttaaagtatttgaaaatgATTATGCTCTCAGTAATCACAAGATCTATCATCGCACCATCGGCTATTATGgctgtatatattgtaatagaAAGTTTAATACGATGACACTATATAGGAAACACAAAAATCATCATTTCTCCCAACTAAATGTTGATAATCCAACGAAATGCGAGCATTGCGACGAGACGTTTGTTGCGTTCAGAGAAATGATATACCATATGAGGGACGTTCACGGTGACAACAAAGAATGGATCGTCTTACCAAAGGAATCTATTGAAGAGAAATGTAATATTTGCCAGAAATCATTCTTTAATTTACATAGACATTTAGATTATCATGAAGAAAATAGGTGTAAAAAATGCGGCGAGTACTTCTATTCCCGAGCTGATTACGATAATCATCTATGCGCGATTGATAGCGACGAAGAAGTGACCGAAGCAAACTCGAATGGCGTTCGGGCTGTATACGAAGAATGTAGCTTCTGTTTCAAACCTGTGACAAGGAAAAACTCAAAGCGTCTACACGATCAAATCCACAGAGGATCCGGTTCTATATCCTGTCGTTTCTGTAcccttaaatttaaaacaatggaCGCCTTCAATATTCACGCGTTTTCACACAGAAGTAGAAAGTATAAGAAGAAACCGATAAAGTGTCGCAAGTGCGGTGAACAATTCGTCAAATACGGTCCATTCATAAAACATATGAAGTTCGTTCATAAGTGCTCGAAGAAGCTTCACTACAGAGCCACGGTGATGCCCGAGAAGTGCGTCATTTGCGATGGAGATTTTCCTAACTTACACAATCACTATCGCGCGCATTTGCAAAATCAATGCCATCAATGtctcaaatatttcatttcatccAAAGCGTTTTCCCTCCACGAATGCGACAAAGAGGATTCAGATCCGTCTAAAGTGTTTATAAGTGACGAAAATTTGCCGGCGCTCATCAATTCATACGTGCCTAAAGACGAAAAAGATGATGAGAAATATTACGGTCACGAGGACGAAGAGGAAGAGGAAGAAGAGAGAGTCAATCTGGAAACAGTAACGCAGGATGAAGATAGTCAAAATTCCATCGACATTGACGAAGGCAAGGTACACGATATGGTGCATGCTCCGATTATATCAGACGTTTTGTCCCTCTATAAGAAAAAAGAAGTTAAAGCCAAATGCGAAAGTGAAAACGATGGACAAAGTGTTAGCGGTAACATTGTGGTTCTAACTGATGAGGATTCTATAGGTTTTGAAGAAAATGTACCTGTTATTACAATAGACGATTAA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTVDNNLQLAEMVMECARVKIYEGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSSPTPPNRQSSDSAFSSQTEVSKPSSSFESKVTPVSRNSRKRSGDSVDDVSISSRSHDYRPGSSKRVDQLRMSQKKPRLSANSDSDYDDNSASFYSAETDSDEPLQHKCKQCGKAFRSHNSMAAHMKCHKRKSAMNNTSFESPNEIKELKDAADEEDKLSCDKCGKDFKLKIMLKRHNDICGKSPRKELMVSLEPIDAVHKVVKIDCQMCSTKFKTIENLEKHMRVVHAAVLKKDNNTHNENEKVSVPCFYCGLPFEDYYVHSAHFNMCPEKTNVNTFECPVCAKVITKKGCYFLHLKAHFFPLTPTKSTVEGTAKQESFQCRMCNRKLPSQDSLITHLAAHMSNMDEADEGGDEESRASTIEDSASVHSEYSGNISTGPLKCKICDKSFKYKKSLVTHEEKHIHGEIKMETPDKNNSKSLLNETSTPVNQYESESSQDEGEEDNTCDICEKQFSYKRLLLQHKRTKHPMTAGFKRAKINLKDCSVRCLICDIEMKVSAINEHNQTHISVNMKPRNLYTCRECEQQFKSCSALANHIKLVHRLKQQPPKVKTPPADLADFCEVVVTKAEPLDVLQNHNGFVEVSASDSTPLVDMSGFTCPICNKQLPTLISLKRHVNWHNHVGKSMEKQLECFVCKEIFRFQCHYKIHMREHYNDTNLDPKLLTCSICNRKSKHLRAAQAHMNYHKQTRFKNKDYECSICKRVFQYRKVYLSHMAIHYKRGESANNTIVGSVLPNTADKNKFDGTHTCHHCGKVCDSENSLKHHIIWHKSKTSLFGARHQCDICNVQFTNKKRLELHTRTHFEDENGPFKCHICGKGFIVEDYYKRHVKGHNFDHQSHKKRIEKLRKNKVKCPICARYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPNYFSCKLCAKVFLDERRLQFHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKGHLTQKYIDNPLKCPHCDEKFMRGYDLHYHLRDAHDINETWIAERGTQTLDGPLKELQCSICFKVLASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLIGDTEIYPKKVKCHICYKAFHLQVKLDCHLRTQHDIKTFKKASEGKQEIVCDYCFKVFENDYALSNHKIYHRTIGYYGCIYCNRKFNTMTLYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDNKEWIVLPKESIEEKCNICQKSFFNLHRHLDYHEENRCKKCGEYFYSRADYDNHLCAIDSDEEVTEANSNGVRAVYEECSFCFKPVTRKNSKRLHDQIHRGSGSISCRFCTLKFKTMDAFNIHAFSHRSRKYKKKPIKCRKCGEQFVKYGPFIKHMKFVHKCSKKLHYRATVMPEKCVICDGDFPNLHNHYRAHLQNQCHQCLKYFISSKAFSLHECDKEDSDPSKVFISDENLPALINSYVPKDEKDDEKYYGHEDEEEEEEERVNLETVTQDEDSQNSIDIDEGKVHDMVHAPIISDVLSLYKKKEVKAKCESENDGQSVSGNIVVLTDEDSIGFEENVPVITIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01079240;
90% Identity
iTF_00843722;
80% Identity
-