Vtam002889.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vanessa tameamea
Gene Symbol
-
Assembly
GCA_037043105.1
Location
CM073280.1:2731245-2738534[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.0011 0.083 13.8 6.3 1 21 192 212 192 214 0.95
2 28 0.0023 0.17 12.9 0.8 2 20 242 260 241 262 0.93
3 28 4.2e-05 0.0031 18.3 0.5 3 23 289 310 287 310 0.96
4 28 9.3 6.8e+02 1.5 0.1 2 12 330 340 329 342 0.85
5 28 0.014 1 10.4 1.2 1 23 360 382 360 382 0.97
6 28 0.00042 0.031 15.2 0.4 1 23 402 424 402 424 0.96
7 28 0.00018 0.013 16.4 3.1 2 23 464 485 463 485 0.96
8 28 0.00037 0.027 15.3 2.3 2 23 529 551 529 551 0.97
9 28 0.0002 0.015 16.2 0.7 1 23 601 624 601 624 0.97
10 28 0.00037 0.027 15.4 0.2 1 23 680 702 680 702 0.97
11 28 0.0078 0.57 11.2 5.7 2 23 714 735 713 735 0.96
12 28 0.04 2.9 9.0 1.7 2 23 747 768 746 768 0.96
13 28 0.0041 0.3 12.1 1.7 1 23 778 800 778 800 0.98
14 28 0.0058 0.43 11.6 9.8 1 23 829 851 829 851 0.97
15 28 0.00016 0.012 16.5 3.6 1 23 862 884 862 884 0.99
16 28 2.3e-05 0.0017 19.1 0.4 1 23 892 914 892 914 0.98
17 28 0.003 0.22 12.5 0.1 2 23 934 956 933 956 0.97
18 28 0.08 5.8 8.0 3.5 1 23 1003 1025 1003 1025 0.97
19 28 0.02 1.5 9.9 1.5 2 23 1036 1058 1035 1058 0.95
20 28 0.00078 0.057 14.3 0.3 2 23 1081 1102 1080 1102 0.95
21 28 0.0024 0.17 12.8 0.2 2 23 1183 1204 1182 1204 0.95
22 28 1.7 1.2e+02 3.8 4.2 5 23 1214 1232 1211 1232 0.94
23 28 0.014 1 10.4 0.8 2 23 1243 1265 1242 1265 0.95
24 28 1.2 89 4.3 3.8 2 23 1282 1300 1282 1300 0.89
25 28 0.21 15 6.7 1.2 2 21 1304 1323 1304 1324 0.93
26 28 0.46 34 5.6 0.9 2 23 1373 1394 1372 1394 0.93
27 28 0.0032 0.24 12.4 0.3 2 23 1405 1427 1404 1427 0.96
28 28 5 3.7e+02 2.3 1.6 2 19 1465 1482 1464 1482 0.85

Sequence Information

Coding Sequence
ATGGCTCTCAAGCTTGGAAAATGCAGACTATGTCTCAAGCTCGGCGACTTCTATTCCATCTTTACGATGGACAACAACTTACAACTCGCCGAAATGGTTATGGAATGTGCCCGAGTTAAAATATACGACGGCGACGGGCTTCCAGATAAAATTTGCAGCGAATGTATTCAAAAACTCAGTAGCGctcatatatttaaacaacaatgCGAACGATCTGATCAAGAGTTAAGACGCAACTATGTTCCTCCGCCAGGGTTCAGTTCACCAACACCACCCAACAGGCAGAGCAGTGATTCAGCGTTTTCATCACAGACTGAAGTTTCTAAGCCATCATCGACGTTCGAAAATAAAGTAACACCTGTCAGTAGATCTCGTAAGCGAAGCGGTGACAGTATTGACGATGCATCTATAAGCAGCCGTTCTCACGATTACCGACCGGGAAGTTCGAAACGCGTTGACGAACTACGAATGTCTCAGAAGAAGCCTAGACTTTCGATGAATTCAGATTCTGATTACGATGACAATAGCGCTTCTTTTTATTCAGCTGAAACTGACTCCGATGAACCGCTACTACACAAATGCAAACAATGCGGTAAAGCATTCCGGACACATATCAGTTTATCGGCTCATATGAAATGTCACAAACGAAAAAATGCATTGAAAAATTTGTCTTTTGAATCCccgaaagaaataaaagatgCTACAGATGAAGAGGACAAACTATCATGTGACAAATGCGgaaagcaatttaaattaaaaataatgttaaagcgCCATCACGACATTTGCGGCAAATCTCCTCGAAAAGAGCTAATGGTATCATTGGAGCCAATCGATGCAGTACAACAAGTGGCCAAAATAGATTGCCAAATGTGCACAACAAAGTTCAAGACAATCGAGAACTTAGAGAAGCACATGAGGGTTGTGCACGCAGCGGTTTTGAAGAGAGATAATTCAATGAACAACGAAAATGGTAAAATATGCGTCCCTTGTTTGTATTGCGGCCAGCCTTTCGACGATTATTATATCCATAGCGCTCACTTCAATGTGTGTCCTCAGAAGAATAATCTCGCCACTTTTGAATGCCCTGTTTGtacaaaagttattactaaaaagGGATGTTATTTCTTGCACATTAAAGCGCATTTTTTTCCTTTGTCGTCTAATAAATCTTTACAAGAAATAACATCGAAGCAGGAAAACTTTCAATGTCGTATGTGTAACAAGAAATTATCTAGCCAAGATTCGTTGATAACTCATCTAGCTGCTCACATGTCCAACATAGACGAAGCGGACGAAGGCGGTGACGAAGAGTCTAGAGCAAGCACAATTGATGATTCAGCGTCAGTACATTCCGAATATAGTTCAAATGTTTCAAGCGGGCCATTAAAATGCAAGACTTgtgataaatcatttaaatacaagAAATCTTTATTGACACACGAAGAAAAACATTCTAATGATAGTAAAATAAAGATAGAACCGCCGGACAGGAACAATTCCACAGACTTGTTAAATGAAACTACTAAATCCATGAACCACTACGACTCAGAATCTAGCCAAGACGAAGGCGAAGAAGATAATACCTGTGATATTTGCGAAAAGCAATTCTCATATAAAAGACTGCTTTTGCAGCATAAACGAACCAAACATCCAATGACTTCAGGGTTTAAACGAgctaaaatcaatttaaaaaattgttccGTGCGGTGtttgatatgcgacattgaaaTGAAAGTGAGTGCGATTAACGAACACAATCAGACACATATATCTGTCAACATCAAGCCAAGAAATTTATACACATGTATGGAATGCGAAGAGCAATTTAAGAGCTGCAGTGCGTTGGCgaatcacattaaaataatacacaggCTTAAGCAACAGCCGAGTAAAATTAATGCCCCGTCAGCCGATTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAACCCCTGGACGAGCTCCAGAGTCACAACGGCTTTGGTGAGGTTTCCGCTAAAAATGGTTCACCCTCTGTCAACATGAGTGGCTTTACTTGTCCGATTTGCAACAAACAACTGCCAACGTTGATATCTCTCAAAAGACACGTGAACTGGCATAATCACGTTGGGAAAAGCATGGAGAAGAAGTTGGAATGCTTCGTTTGTAAGgagACTTTCCGGTTTCAGTGTCATTATAAAATCCACATGCGCGAACACTATAATGACACTAATCTTGACCCCAAATTGCTAACTTGCTCGATCTGTAATCGCAAGAGCAAACATCTCCGTGCGGCTCAGGCACATATGAACTACCACAAGCAAACACGTTTTCAAAATAAAGATTACGAGTGTTCGATTTGCAAGAGAGTGTTTCAGCATCGCAAGGTTTATCTCTCACACATGGCAATTCATTACAAGCGCGGTGAAAGTGCTAATAATACTATTGTGGGTTACGTGTTACCTAACTCggtcgataaaaataaatttgatggcACGCATACATGTCATCACTGTGGTAAAATTTGCGATTCGGAAAACTCGCTTAAACATCATATACGGTGGCATAATTCCAAGACGTCGTTATTTGGTGCTCGATACGAATGTCATATCTGCAATTTGCAGTTCACAAACAAAAGAAGGTTAGAACTTCACACCAGAACACATTACGAAGACGATAATGGACCTTATAAGTGTAATATTTGCGGAAAAGGATACATCGATGAAGATTATTATAAGAGACACGTGAAAGGCCATAACTTTGATCACCAATCGCATAAAAAACGAATAGAAAAACTTAGGAAAAACAAAGTGAAGTGTCCGATATGTGCTCGTTACTATCCGGACTTAGTAAAACTCATTCGCCACTTGCGGCGGACCCATCCGGAGAGTAAAATGATAAAGGAGGATCCGGACGCACCCCCTCCAAACTATTATTCTTGTAAATTGTGTGCTAAAGTTTTCTTAGACGAAAGAAGATTACAGTTTCACGAGGAAGCTCATTTACGGAAGCCAGAATTCTACAAATGTAAATTCTGTGGCAAAAAGACCATATCATTGAAAAATCATAGGATCCATATAAAAGGTCATCTCACTCAAAAATATATCGACAATCCATTGAAATGTCCACATTGCGCCGAAACTTTTATGCGGGGTTACGATTTACATTACCATTTGCGGGACGCCCACGATATTAATGAGACATGGATAGAGGAACGACGAAATCAGACCTTGGACGGTCCTTTAAAAGAGCTACAATGTTCTATATGTTTCAAAGTCTTAGCTAGCAAAGGAAACTTTGAAAGACACATTGATTACCATAATTCTCTTCGATGTAATTACTGCTTTGATTACTTTAGCTCTTTGAGGTTCCTTGAGGGACATCTTGCATTCAGCTGTGACAAAAAGAAACTTATCGGCGACACTGAAATTTACCCGAAAAAAGTTAAGTGCCATGTTTGTTACAAAGCTTTCCATTTGCAAGTGAAATTAGATTGTCACTTGCGCACTCAACACGAAATCAAAACGTTTAAAAAGGCATGCGAAGGCAAACAAGAAATTGTTTGCGATTATTGCTTTAAAgtttttgaaaatgaatatgCTCTCAGCACTCATAAAATCTATCATCGCACAGTTGGCTACTATGGCTGTATATATTGCAATAGGAAGTTTAATACAATGACATTGTATAGGAAACACAAAAATCATCACTTCTCCCAACTAAATGTCGATAACCCAACGAAATGTGAGCACTGTGATGAGACATTTGTTGCTTTTAGAGAAATGATATATCACATGAGAGATGTTCACGGAGACGATAAAGAATGGATTGTCCTACCAAAAGAATCGATAGAAGAAAAATGTGATATTTGTCAGAAAACATTCTTTAATTTACACAGACATTTAGATTATCACGAAGAAAATCGTTGCAAAAAATGTGGCGAGTATTTCTTTTCCCGAGCAGATTATGATAATCATCTTTGTGCTATCGACAGCGACGAGGAAGTCACTGAAACTAATACAAATGGCGTTCGGCCTGTATACGAAGAATGTAGTTTCTGTTTCAAACCTGTAACTCGAAAAAACTCAAAGCGTCTACATGATCAAATCCACAGAGGATCAGGTTCTATTTCGTGTCGTTTCTGCTCACTTAAGTTTAAAACCATGGATGCTTTCAATATTCACGCATTTTCGCATAGAAGTAGAAAGTATAagaaaaaaccaataaaatgtCGTAAATGTGGCGAGCAGTTTGTAAAGTATGGTCCATTCATAAAACATATGAAGATTGTCCATAAGTGTTCTAAGAAGCTTCATTACAGAGCCACAGTGATGCCTGAGCAGTGCATTGTTTGTAACGAAGATTTTCCCAATTTACATAACCACTACCGCGCACATTTGCAAAATCAATGTCAgcaatgtttcaaatattttacttcatcCAAAGTGTTTTCACTCCATGATTGCGATAAAGAAGATTCGGATCCGtctaaagtatttatatgtgACGCTAACTTACCGGCTCTTATTAATTCCTATGTTCCGAAAGATGAAAAAGATGATGAGAAATATTACGGTCACGAAGAGGAaggagaagaagaagaagaagagatGGTGAATCAAGAGCAAGAGATAGTAACGCAAGATGAAGACAGTCAAAATTCTATTGACATTGATGAAGGAAATGTACATGATATGGTGCACGCCCCAATAATATCCGACGTCCTGTCgctttttaagaaaaaagaagTTAATAGCAAATGCAATCGTGAAAACGATGGACAGAGTAGTGTTAGTGGTAACATTGTGGTTCTAACTGACGATGATTCTATAGGTTTTGAGGAGAACGTACCTGTTATAACGATAGATGATTAA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTMDNNLQLAEMVMECARVKIYDGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSSPTPPNRQSSDSAFSSQTEVSKPSSTFENKVTPVSRSRKRSGDSIDDASISSRSHDYRPGSSKRVDELRMSQKKPRLSMNSDSDYDDNSASFYSAETDSDEPLLHKCKQCGKAFRTHISLSAHMKCHKRKNALKNLSFESPKEIKDATDEEDKLSCDKCGKQFKLKIMLKRHHDICGKSPRKELMVSLEPIDAVQQVAKIDCQMCTTKFKTIENLEKHMRVVHAAVLKRDNSMNNENGKICVPCLYCGQPFDDYYIHSAHFNVCPQKNNLATFECPVCTKVITKKGCYFLHIKAHFFPLSSNKSLQEITSKQENFQCRMCNKKLSSQDSLITHLAAHMSNIDEADEGGDEESRASTIDDSASVHSEYSSNVSSGPLKCKTCDKSFKYKKSLLTHEEKHSNDSKIKIEPPDRNNSTDLLNETTKSMNHYDSESSQDEGEEDNTCDICEKQFSYKRLLLQHKRTKHPMTSGFKRAKINLKNCSVRCLICDIEMKVSAINEHNQTHISVNIKPRNLYTCMECEEQFKSCSALANHIKIIHRLKQQPSKINAPSADLADFCEVVVTKAEPLDELQSHNGFGEVSAKNGSPSVNMSGFTCPICNKQLPTLISLKRHVNWHNHVGKSMEKKLECFVCKETFRFQCHYKIHMREHYNDTNLDPKLLTCSICNRKSKHLRAAQAHMNYHKQTRFQNKDYECSICKRVFQHRKVYLSHMAIHYKRGESANNTIVGYVLPNSVDKNKFDGTHTCHHCGKICDSENSLKHHIRWHNSKTSLFGARYECHICNLQFTNKRRLELHTRTHYEDDNGPYKCNICGKGYIDEDYYKRHVKGHNFDHQSHKKRIEKLRKNKVKCPICARYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPNYYSCKLCAKVFLDERRLQFHEEAHLRKPEFYKCKFCGKKTISLKNHRIHIKGHLTQKYIDNPLKCPHCAETFMRGYDLHYHLRDAHDINETWIEERRNQTLDGPLKELQCSICFKVLASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLIGDTEIYPKKVKCHVCYKAFHLQVKLDCHLRTQHEIKTFKKACEGKQEIVCDYCFKVFENEYALSTHKIYHRTVGYYGCIYCNRKFNTMTLYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWIVLPKESIEEKCDICQKTFFNLHRHLDYHEENRCKKCGEYFFSRADYDNHLCAIDSDEEVTETNTNGVRPVYEECSFCFKPVTRKNSKRLHDQIHRGSGSISCRFCSLKFKTMDAFNIHAFSHRSRKYKKKPIKCRKCGEQFVKYGPFIKHMKIVHKCSKKLHYRATVMPEQCIVCNEDFPNLHNHYRAHLQNQCQQCFKYFTSSKVFSLHDCDKEDSDPSKVFICDANLPALINSYVPKDEKDDEKYYGHEEEGEEEEEEMVNQEQEIVTQDEDSQNSIDIDEGNVHDMVHAPIISDVLSLFKKKEVNSKCNRENDGQSSVSGNIVVLTDDDSIGFEENVPVITIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01079240;
90% Identity
iTF_01078410;
80% Identity
-