Vcar016722.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- -
- Assembly
- GCA_905220365.1
- Location
- LR999926.1:13218535-13227563[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.001 0.088 13.8 6.3 1 21 192 212 192 214 0.95 2 29 0.0021 0.18 12.9 0.8 2 20 242 260 241 262 0.93 3 29 2.7e-05 0.0023 18.8 0.5 3 23 289 310 287 310 0.96 4 29 8.5 7.2e+02 1.5 0.1 2 12 330 340 329 342 0.85 5 29 0.04 3.4 8.8 1.2 1 23 360 382 360 382 0.97 6 29 0.0011 0.093 13.7 0.2 1 23 402 424 402 424 0.96 7 29 3.7e-05 0.0032 18.4 2.3 2 23 461 482 460 482 0.96 8 29 0.0003 0.026 15.5 2.0 2 23 526 548 526 548 0.97 9 29 0.00018 0.015 16.2 0.7 1 23 598 621 598 621 0.97 10 29 0.00034 0.029 15.4 0.2 1 23 677 699 677 699 0.97 11 29 0.0072 0.61 11.2 5.7 2 23 711 732 710 732 0.96 12 29 0.037 3.1 9.0 1.7 2 23 744 765 743 765 0.96 13 29 0.0038 0.32 12.1 1.7 1 23 775 797 775 797 0.98 14 29 0.0018 0.16 13.0 9.8 1 23 826 848 826 848 0.97 15 29 0.0013 0.11 13.5 5.5 1 23 859 881 859 881 0.98 16 29 2.2e-05 0.0018 19.1 0.4 1 23 889 911 889 911 0.98 17 29 0.00061 0.052 14.6 0.2 2 23 931 953 930 953 0.97 18 29 0.073 6.2 8.0 3.5 1 23 1000 1022 1000 1022 0.97 19 29 0.0063 0.54 11.4 2.3 2 23 1033 1055 1032 1055 0.95 20 29 0.00071 0.06 14.3 0.3 2 23 1078 1099 1077 1099 0.95 21 29 7.4 6.3e+02 1.7 5.9 2 23 1142 1164 1141 1164 0.94 22 29 0.0022 0.18 12.8 0.2 2 23 1180 1201 1179 1201 0.95 23 29 1.6 1.3e+02 3.8 4.2 5 23 1211 1229 1208 1229 0.94 24 29 0.013 1.1 10.4 0.8 2 23 1240 1262 1239 1262 0.95 25 29 0.98 83 4.5 4.2 2 23 1279 1297 1279 1297 0.89 26 29 0.19 16 6.7 1.2 2 21 1301 1320 1301 1321 0.93 27 29 0.42 36 5.6 0.9 2 23 1370 1391 1369 1391 0.93 28 29 0.003 0.25 12.4 0.3 2 23 1402 1424 1401 1424 0.96 29 29 8.8 7.5e+02 1.5 0.9 2 19 1462 1479 1462 1479 0.85
Sequence Information
- Coding Sequence
- ATGGCTCTCAAGCTTGGAAAATGCAGACTATGTCTCAAGCTCGGCGACTTCTATTCCATCTTTACGGTGGACAACAACTTACAACTCGCCGAAATGGTTATGGAATGTGCCCGAGTTAAAATATACGACGGCGACGGGCTTCCAGATAAAATATGCAGCGAATGTATTCAAAAACTCAGTAGCGCCCATATATTTAAACAACAATGCGAACGATCTGATCAAGAGTTAAGACGCAACTATGTTCCTCCGCCAGGGTTCAGTTCACCAACACCACCCAACAGGCAGAGCAGCGATTCAGCATTTTCATCACAGACGGAAGTTTCTAAGCCATCGTCGACGTTCGAAAATAAAGTAACACCTGTCAGTAGATCTCGTAAGCGAAGCGGTGACAGTAACGACGATGCATCCATAAGTAGCCGTTCACACGATTACCGACCGGGAAGTTCGAAACGCGTTGACGAGCTACGAATGTCTCAGAAGAAGCCCAGGCTTTCAATGAACTCTGATTCTGATTACGATGACAACAGCGCATCCTTTTATTCAGCTGAAACCGACTCCGATGAACCGCTGCTACACAAATGCAAACAATGCGGTAAGGCATTCAGGACACACATCAGTTTATCAGCTCATATGAAATGTCACAAACGTAAAAATGCATTGAAGAATTTCTCTTTTGAATCTCCGAAGGAAATTAAAGATGCAACAGACGAAGAGGACAAACTGTCATGTGACAAATGTGGAAAGCAATTTAAATTAAAAATTATGTTAAAGCGCCATCACGACATTTGCGGGAAATCTCCACGAAAAGAATTGATGGTAGCATTGGAGCCGATCGATGCGGTACAACAAGTGGCCAAAATAGATTGCACGATGTGCACAACAAAGTTCAAGACAATCGAGAACTTGGAAAAGCACATGAGGGTTGTGCACGCAGCTGTTTTGAAGAGAGACACTTCGATGAGCAATGAAAATGGCAAAATATGTGTTCCTTGCTTGTATTGCGGCCAGCCTTTCGATGATTATTATATCCATAGCGCTCACTTCAATATATGTCCTCAGAAGAACAATCTTGCCACTTTCGAATGCCCCGTTTGCACAAAAGTTATTACTAAAAAGGGATGTTATTTCTTACACGTTAAAGCGCATTTTTTTCCATTGTCGTCAAATAAATCATTACAAGAAATAACATCGAAGCAGGAAAACTTTCAATGCCGTATGTGCAACAAGAAATTACCTAGCCAAGATTCGTTGATAACTCATCTAGCTGCTCACATGTCCAACGTAGACGAAGCGGACGAAGGCGGCGACGAGGAGTCTAGAGCAAGCACAATTGATGATTCAGCGTCAGTACATTCCGAATATAGTTCAAGCGGTCCATTAAAATGTAAGATTTGTGACAAATCATTTAAATACAAGAAATCTTTATTGACACACGAAGAAAAACATACTCATGATGGTAAAATAAAAATAGAAATGCCGGACAGGAACAATTCGACCGACTTGTTGAATGAAACAACCAAATCCATGAACCACTACGAATCGGAATCTAGCCAAGACGAAGGCGAAGAGGATAATACCTGTGATATTTGTGAAAAGCAATTTTCATATAAGAGACTGCTTGTGCAGCACAAGCGAACGAAACATCCGATGACGTCAGGGTTTAAACGAGCCAAAATCAATTTAAAAAATTGTTCCGTGCGGTGTCTGATATGCGACATTGAAATGAAAGTGAGTGCGATTAACGAACACAATCAGACACATATCTCTGTCAACATTAAGCCGAGGAATTTATACACATGTATGGAGTGCGAAGAGCAATTTAAGAGCTGCAGCGCGCTGGCGAATCACATCAAAATAATACACAGGCTTAAGCAACAGCCGAGTAAAATTAACGCGCCGCCAGCAGATTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAACCCCTGGACGAGCTCCAGAGTCACAACGGCTTTGGTGAGGTCTCCGCTAACAATGGGTCACCCTCGGTCAACATGAGTGGCTTTACTTGTCCTATTTGCAACAAACAATTGCCGACGTTGATATCTCTCAAAAGACACGTGAACTGGCATAATCATGTCGGGAAAAGCATGGAGAAGAAGTTGGAATGCTTCGTTTGTAAGGAGACATTCCGGTTTCAGTGTCATTATAAAATCCACATGCGCGAACATTATAATGACACTAATCTCGACCCCAAATTGCTAACTTGCTCGATCTGTAATCGCAAGAGCAAACATCTGCGTGCGGCCCAGGCGCATATGAACTACCACAAGCAGACGCGTTTTCAAAATAAAGATTACGAGTGTTCGATTTGCAAGAGAGTGTTTCAGCATCGCAAGGTTTATCTCTCACACATGGCAATTCATTATAAGCGCGGTGAAAGTGCCAACAATACTATTGTAGGGTATGTGTTACCTAACTCGGTCGATAAAAATAAATTCGATGGCACGCATACATGTCATCACTGTGGTAAGGTTTGCGATTCGGAAAACTCGCTTAAACATCACATACGGTGGCATAACTCCAAAACGTCGTTATTTGGTGCCCGACACGAATGTCACATCTGTAATCTGCAGTTCACAAACAAAAGAAGATTAGAACTTCACACCAGAACACACTTCGAAGATGATAACGGACCTTATAAGTGTAATATTTGCGGAAAAGGGTACATCGATGAAGATTATTACAAGAGACACGTAAAAGGCCATAACTTTGATCACCAATCGCATAAAAAACGAATAGAAAAACTTAGGAAAAACAAAGTCAAGTGTCCGATATGTTCTCGTTACTATCCGGACTTAGTAAAACTCATTCGACACTTGCGGCGGACCCATCCTGAGAGTAAAATGATAAAGGAGGATCCGGACGCACCCCCTCCAAACTACTATTCTTGTAAATTGTGTGCTAAGGTTTTCTTAGATGAAAGAAGATTACAGTTTCACGAGGAAGCTCATCTTCGGAAACCAGAATTTTACAAATGTAAATTCTGTGGCAAAAAGACTATATCATTGAAAAATCATAGGATCCATATAAAAGGTCATCTCACTCAAAAATATATCGACAATCCATTGAAATGTCCACATTGCACCGAAACATTTATGCGCGGCTACGATTTACATTACCATTTGCGGGACGCCCACGACATTAATGAGACATGGATAGAGGAACGACGTAATCAGACCTTGGACGGACCTTTAAAAGAGCTACAATGTTCAATATGTTTCAAAGTCTTAGCTAGCAAAGGAAACTTTGAAAGACACATTGATTACCATAATTCTCTTCGATGTAATTACTGCTTTGATTACTTTAGCTCTCTAAGGTTCCTCGAGGGACATCTGGCATTCAGCTGTGACAAAAAGAAACTTATCGGTGACACGGAAATTTACCCGAAAAAAGTTAAGTGCCATATTTGTTACAAAGCTTTCCATTTGCAAGTGAAATTAGATTGTCACTTGCGCACTCAACACGAAATAAAAACATTTAAAAAGGCATGCGAAGGAAAACAAGAAATCGTTTGCGATTATTGCTTTAAAGTTTTTGAAAATGAATATGCACTCAGTACTCATAAAATCTATCATCGTACAGTTGGGTACTATGGCTGTATATACTGCAATAGGAAGTTTAATACGATGACGCTGTATAGGAAGCACAAAAACCATCACTTCTCCCAGCTAAACGTCGATAATCCAACGAAATGTGAGCACTGCGATGAGACATTTGTTGCGTTCAGAGAAATGATATACCACATGAGGGATGTTCACGGAGACGACAAAGAATGGATTGTCTTACCGAAAGAATCGATAGAAGAAAAATGTAATATTTGTCAGAAAACGTTCTTTAATTTACACCGACATTTAGATTATCACGAAGAAAACCGGTGCAAAAAATGTGGCGAGTACTTCTTTTCCCGAGCAGATTATGATAATCATCTTTGTGCCATCGACAGCGACGAGGAAGTCACTGAAACTAATACGAATGGCGTTCGGTCTGTATACGAAGAATGTAGTTTCTGTTTCAAACCCGTTACTCGAAAGAACTCGAAACGTTTACACGATCAAATCCACAGAGGATCTGGTTCTATTTCGTGTCGTTTCTGCTCACTCAAGTTTAAAACCATGGATGCTTTCAATATTCACGCATTTTCGCATAGAAGTAGAAAATATAAGAAAAAACCAATAAAATGTCGTAAGTGTGGCGAGCAATTCGTAAAATATGGTCCATTCATAAAACATATGAAGATTGTCCATAAGTGTTCTAAGAAGCTTCATTACAGAGCCACAGTGATGCCCGAGAAGTGTGTTGTTTGTAATGGAGATTTCCCGAATTTACACAACCACTACCGCGCACACTTGCAAAATCAATGTCAACAGTGTCTTAAGTATTTTACTTCATCCAAAGTGTTTTCACTCCATGATTGCGATAAAGAAGATTCGGATCCGTCTAAAGTCTTCATATGTGACGCTAACTTACCGGCTCTTATAAACTCCTATGTACCGAAAGATGAAAAAGACGATGAGAAATATTACGGTCACGACGAGGAAGGAGAAGAAGAAGAAGAGATGGTGAATCAAGAGCAAGAGATAGCGACGCAAGATGAAGACAGTCAAAATTCCATTGACATTGACGAAGGAAATTTACATGACATGGCGCACGCTCCAATTATATCCGACGTCTTGTCGCTTTTTAAGAAAAAAGAAGTTAAAAGTAAAGGCAATGTGGAAAACGATGGACAGAGTAGTGTTAGTGGTAACATTGTGGTCCTAACTGATGATGATTCTATAGGCTTTGAGGAAAATGTACCTGTTATAACGATAGATGATTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNNLQLAEMVMECARVKIYDGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSSPTPPNRQSSDSAFSSQTEVSKPSSTFENKVTPVSRSRKRSGDSNDDASISSRSHDYRPGSSKRVDELRMSQKKPRLSMNSDSDYDDNSASFYSAETDSDEPLLHKCKQCGKAFRTHISLSAHMKCHKRKNALKNFSFESPKEIKDATDEEDKLSCDKCGKQFKLKIMLKRHHDICGKSPRKELMVALEPIDAVQQVAKIDCTMCTTKFKTIENLEKHMRVVHAAVLKRDTSMSNENGKICVPCLYCGQPFDDYYIHSAHFNICPQKNNLATFECPVCTKVITKKGCYFLHVKAHFFPLSSNKSLQEITSKQENFQCRMCNKKLPSQDSLITHLAAHMSNVDEADEGGDEESRASTIDDSASVHSEYSSSGPLKCKICDKSFKYKKSLLTHEEKHTHDGKIKIEMPDRNNSTDLLNETTKSMNHYESESSQDEGEEDNTCDICEKQFSYKRLLVQHKRTKHPMTSGFKRAKINLKNCSVRCLICDIEMKVSAINEHNQTHISVNIKPRNLYTCMECEEQFKSCSALANHIKIIHRLKQQPSKINAPPADLADFCEVVVTKAEPLDELQSHNGFGEVSANNGSPSVNMSGFTCPICNKQLPTLISLKRHVNWHNHVGKSMEKKLECFVCKETFRFQCHYKIHMREHYNDTNLDPKLLTCSICNRKSKHLRAAQAHMNYHKQTRFQNKDYECSICKRVFQHRKVYLSHMAIHYKRGESANNTIVGYVLPNSVDKNKFDGTHTCHHCGKVCDSENSLKHHIRWHNSKTSLFGARHECHICNLQFTNKRRLELHTRTHFEDDNGPYKCNICGKGYIDEDYYKRHVKGHNFDHQSHKKRIEKLRKNKVKCPICSRYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPNYYSCKLCAKVFLDERRLQFHEEAHLRKPEFYKCKFCGKKTISLKNHRIHIKGHLTQKYIDNPLKCPHCTETFMRGYDLHYHLRDAHDINETWIEERRNQTLDGPLKELQCSICFKVLASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCDKKKLIGDTEIYPKKVKCHICYKAFHLQVKLDCHLRTQHEIKTFKKACEGKQEIVCDYCFKVFENEYALSTHKIYHRTVGYYGCIYCNRKFNTMTLYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWIVLPKESIEEKCNICQKTFFNLHRHLDYHEENRCKKCGEYFFSRADYDNHLCAIDSDEEVTETNTNGVRSVYEECSFCFKPVTRKNSKRLHDQIHRGSGSISCRFCSLKFKTMDAFNIHAFSHRSRKYKKKPIKCRKCGEQFVKYGPFIKHMKIVHKCSKKLHYRATVMPEKCVVCNGDFPNLHNHYRAHLQNQCQQCLKYFTSSKVFSLHDCDKEDSDPSKVFICDANLPALINSYVPKDEKDDEKYYGHDEEGEEEEEMVNQEQEIATQDEDSQNSIDIDEGNLHDMAHAPIISDVLSLFKKKEVKSKGNVENDGQSSVSGNIVVLTDDDSIGFEENVPVITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079240;
- 90% Identity
- iTF_01079240;
- 80% Identity
- -