Nmun011907.1
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_963556515.1
- Location
- OY748292.1:21938857-21954190[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.19 8.4e+03 -3.0 0.2 54 55 58 59 31 97 0.42 2 3 2e-78 9.2e-74 249.7 22.7 1 298 114 401 114 402 0.91 3 3 1 4.5e+04 -5.8 16.4 1 48 399 445 399 473 0.72
Sequence Information
- Coding Sequence
- ATGGGACGTCAATCTGAAATGGCTACACCTCATAATACTGACGATGAAAGCGGAGACGCCTTTACGGATGGTGACTTTGACGATTCAGAAGACGAAACAATCATCGAAAGGAAAGAAGATGTGAAGGAGGTCCAAAAAGAGGATGTTCACAAATTAAATGGAGCCACTAACGGCTATTCAAATGATTTAAAAGAACATACAAAGCATGTAGCTCGGACTATCAGCGAGACGTACTCGAGCGATGCCGATAATCCCAGCTTACCACTATCGGATTTACGAAGAGACTCACACGGTGAAAATTCCTCAATAGTCGGCATACTCGGCGGTCAGCATAATCACGCAGAACAGCGATTGGCGGCTCGTCGGGCTGCTCGTGCGGAGGCGAGAGAGATCCGCATGCGCGAGTTGGAACGGCAACAGCGAGAACAAGAGGACCATGCAGACAAAGCATACGATATGTATGGAGAGACGGTGGGTAGGCGTGAACGGACGCGGCTGTCGGCGCTCAGCCCCGCCAGTTCCGTGCACTCGCCGCGACGCAGTTCGGAAGACTCTGTCGATGAGACCTTCAGCATCAAAGACCTTAGGCACGAGTTAAAAGAAGTGGAGGAAAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGTTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAACTGCTCAAGGACAGGATAGAAGAACTACACGAGGAATATTCGCAGTTACAACGAGAACACAAAGAAAAATGCTCGGCTCTGGAGCGTGTGAAGCGGGAGCACGAGTCTGTATCACGAGAACTGTCGGCTGCGCGCGACGCCGTGCGGGCGAGGGACTGCGCCGCGTCTGCTGCGGGGTTCGCGTTCGTGGAGGCGGCCGCGCTGGACCCCGTGCCGGCCGGAGTCGGGCCCGCGGTCGGAGTAGTGCCGCCTCTCGCGCTCGTGTCGCACCACGCGGAGCAGCTGCTCAACGACGCGGGGGAGGGCACGCTCGATgtgcggttgcaaaacttactCAGTTCGAAGCAATCTCTGGAGTCTGAAGTCCGCAAGCTAAAGTTACAGTTGAACGAGGAGCGAGCGGCCAGGCAGAACGGAGTGGCCAACCATCACGATCTCGACTATGAAAATGAATTGGAGAGCGCGCGCAAGAGCGTGTCCGAGGCGAAGGGGCGAGCCGCGCGCGCCGAGGCCGAGGCGGCGCTGCACGCGGCGCACGTGGCACGCCTCGAGGCGCAGCTCGCCCGTCTGCGCGCACGCCAGGAGCACCAGGACGAGCACGAGGAGGCGCTCAAGCACGAGCGGCGCAAGCTGCAGCGGGAGGCTCGTGAAGCTCTGAACCGAGTGGAGGAACTAGAGACAGAGAACAGCCATCTAACGAAGCGACTGGACAAACTTAAAAACGCAAAATCCGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MGRQSEMATPHNTDDESGDAFTDGDFDDSEDETIIERKEDVKEVQKEDVHKLNGATNGYSNDLKEHTKHVARTISETYSSDADNPSLPLSDLRRDSHGENSSIVGILGGQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYGETVGRRERTRLSALSPASSVHSPRRSSEDSVDETFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYSQLQREHKEKCSALERVKREHESVSRELSAARDAVRARDCAASAAGFAFVEAAALDPVPAGVGPAVGVVPPLALVSHHAEQLLNDAGEGTLDVRLQNLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDLDYENELESARKSVSEAKGRAARAEAEAALHAAHVARLEAQLARLRARQEHQDEHEEALKHERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01436106; iTF_00908866; iTF_00636422; iTF_00404942; iTF_01166714; iTF_00441512; iTF_00157222; iTF_01197744; iTF_00823915; iTF_01360636; iTF_01502108;
- 90% Identity
- -
- 80% Identity
- -