Cmes044752.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010001634.1:216805-238104[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.034 2.4e+03 -0.5 0.7 54 91 65 102 32 107 0.57 2 3 3.6e-81 2.6e-76 258.8 22.4 1 297 122 411 122 413 0.93 3 3 1 7.3e+04 -5.7 16.0 1 48 410 456 410 483 0.73
Sequence Information
- Coding Sequence
- ATGGGACATCGATCTGAAGTGGCTACACCTCACAATAGCGACGACGAAAGTGGAGATGCTTTTACCGATGGTGATTTTGGCGATTCGGATGATGAGACTATCAAAGAAAGAAACGGTGATGTAAAAGAATCTGCTATGCCTATGAACGAAGCAAAAAACGATGATATTCACAAAGTAAATGGAGCTACTAATGGCTTTTCTAATGATTTAAAAGAACAACCCAGGCATATAACTCGTACTATTAGCGAGACTCATTCCAGCGATGTAGAGAACGCGAGCTTCTCCCTATCAGACCTACGCAGAGACTCTCACGGCGACCAAAATCCCTCAATAGTCGGCATTCTTGGCGGCCAACAGAATCACGCGGAACAGCGGTTGGCGGCGCGTCGTGCTGCTCGGGCGGAGGCGCGGGAGATTCGCATGCGCGAGTTGGAGCGGCAGCAGAGGGAACAGGAGGACCATGCTGACAAGGCATACGATATGTATGGGGGAAAGACAGAGACTGTGGGTCGGCGGGACCGCACGCGGCTGGCGGCGCTCAGCCCCGCCGGCTCCGTGCACTCGCCGCGCCGAAGCTCGGAGGACTCTGTCGACGACTCCTTCAGCATCAAGGATCTTAGACACGAGTTAAAGGAAGTGGAGGAGAAATTCCGCAAGGCGATGATTCTGAATGCGCAGTTGGATAATGACAAGGCGGCACTCGGCTACCAGCTCGAATTGCTCAAGGACAGAATAGAGGAGCTCCACGAAGAATATGCGCAGttacagCGCGAGCACAGAGAGAAATGTTCGTCCCTGGAGCGCGTGAAGCGCGAGCACGAGTCCGTGTCGCGGGAGCTGAGCGCGGCGCGGGACGCCGTGCGGGCGCGGGACTgcgcggcggccgcggcggGCTTCGCCTTCGTGGAGGCCGCCGCGCTGGACGCCGCCCCGCCCGGCGTGGGGCAGGCCGTGGGCGTGGTGCCGCCGCTCGCGCTAGTGTCGCACCACGCTGAGCAGCTGCTCAATGACGCAGGCGAAGGCCCTCTAGACGTGCGGTTGCAAAAGTTGCTGAGTTCGAAACAATCCTTGGAGTCTGAAGTTCGCAAGCTGAAGCTGCAGCTGAACGAGGAGCGCGCCGCCAGGCAGAACGGAGTGGCCAACCATCACGACCAGGAGTATGAGAATGAGCTGGAGAGCGCGCGCAAGAGCGCGTCGGAGGCGAAGGGGCGCGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGCCTGGAGGCGCAGGTGGCGCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGGCGCTCAAGCACGAGCGCCGCAAGCTGCAGCGCGAGGCGCGTGAAGCGTTGAACCGAGTGGAAGAATTGGAGACTGAGAACAGCCACCTAACGAAACGACTAGACAAACTCAAGAACGCAAAGTCCGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MGHRSEVATPHNSDDESGDAFTDGDFGDSDDETIKERNGDVKESAMPMNEAKNDDIHKVNGATNGFSNDLKEQPRHITRTISETHSSDVENASFSLSDLRRDSHGDQNPSIVGILGGQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYGGKTETVGRRDRTRLAALSPAGSVHSPRRSSEDSVDDSFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSLERVKREHESVSRELSAARDAVRARDCAAAAAGFAFVEAAALDAAPPGVGQAVGVVPPLALVSHHAEQLLNDAGEGPLDVRLQKLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELESARKSASEAKGRAARAEAEAALQAAHVARLEAQVARLRARQDHQDEHEEALKHERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01075459;
- 90% Identity
- iTF_00908866;
- 80% Identity
- -