Hcun000343.1
Basic Information
- Insect
- Hyphantria cunea
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003709505.1
- Location
- PKRV01001004.1:556802-576450[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-77 4e-73 246.4 25.7 1 270 124 391 124 410 0.90 2 2 0.7 1.3e+04 -4.8 15.4 1 49 411 458 411 485 0.73
Sequence Information
- Coding Sequence
- ATGGGGCATCAATCTGAACTGGCTACACCTCAGAATAGTGACGATGAAAGCGGAGATGCTTTTACAGATGGCGATTTTGGCGATTCAGATGATGAAAATGTTATAGAAAGGAATGATAATACAAAAACATCAAATATTCCTATACACGAAACCAAAAACGAGGATATTCACAAAATGAATGGAGCAACAAATGGTTTTTCCAAAAACGCAGATTTCGAGGAACAACCGAGACATTTAGTTCGAACCATTAGTGAGGCTCATTCTAGTGATGTTGAGAATCCAATCATACACCTATCAGACCTTCGTAGGGATTCTCACGGTGACCAAAGCCCATCGATAGTCGGGATTCTTGGAGACCAGCAGAATCACGCTGAACAGCGGTTGGCGGCGCGTCGCGCTGCCAGGGCGGAGGCGCGTGAAATTCGCATGCGCGAGTTAGAACGGCAGCAGAGGGAACAAGAAGACCATGCTGATAAAGCATATGACATGTATGCGGGTAAGACGGAGACGGTGGGGCGGCGGGATCGCACACGCCTGGCGGCGCTCAGCCCCGCCAGCTCTGTACACTCACCCCGGAGGAGCTCCGAGGACTCCGTCGACGATCTCTTCAGTATGAAGGATCTTAGGCACGAGTTAAAAGAAGTGGAGGAAAAATTCCGCAAGGCGATGATCCTGAATGCGCAGTTGGACAACGACAAGGCGGCTCTCGGTTACCAGTTAGAGTTGTTCAAGGACAGGATAGAGGAGCTTCACGAAGAATACGCACAGTTACAGCGGGAGCACAGAGAGAAGTGTTCGTCCCTGGAGCGCGTGAAGCGCGAGCTGGAGTCGGTGACGCGCGAGCTGAGCGCGGCGCGCGACGCGGTGCGCGCGCGCGACTgcgcggcggcggcgggcgGCTTCGCCTTCGTGGAGGCGGCCGCGCTGGACGCGCCCGAGCACGCCGGCCGCGCCGTGGGCGCCGTGCCGCCGCTGGCGCTCGTCAGCCACCGCGCCGAGCAGCTGCTCAACGACGCCGGGGAGGGCACGCTAGATGTACGGTTGCAGAATTTGTTAAGTTCTAAACAGTCATTGGAGTCAGAAGTTCGAAAATTGAAGTTGCAATTGAACGAGGAGCGCGCCGCCAGACAGAACGGTGTAGCGAACCATCACGACCAGGAGTATGAAAATGaatTGGAGTCAGCGCGCAAGGGCCAGTCGGAGGCGAAGGGCCGCGCGGCGCGCGCCGAGGCGGAGGCGGCGCTGCACGCGGCGCACGTGGCGCGCCTCGAGGCGCAGCTCGCCCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCACGAGCGCCGCAAGCTGCAGCGGGAGgCCCGTGAAGCATTAAACCGAGTTGAAGAACTGGAGACTGAGAACAGCCACCTGACGAAACGACTAGACAAACTCAAGAACGCAAAGTCAGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MGHQSELATPQNSDDESGDAFTDGDFGDSDDENVIERNDNTKTSNIPIHETKNEDIHKMNGATNGFSKNADFEEQPRHLVRTISEAHSSDVENPIIHLSDLRRDSHGDQSPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTETVGRRDRTRLAALSPASSVHSPRRSSEDSVDDLFSMKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELFKDRIEELHEEYAQLQREHREKCSSLERVKRELESVTRELSAARDAVRARDCAAAAGGFAFVEAAALDAPEHAGRAVGAVPPLALVSHRAEQLLNDAGEGTLDVRLQNLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELESARKGQSEAKGRAARAEAEAALHAAHVARLEAQLARLRARQDHQDEHEEQLKHERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01075459;
- 90% Identity
- iTF_00157222;
- 80% Identity
- -