Slub007414.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905220595.1
- Location
- HG992278.1:21419888-21439477[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-78 1.5e-73 248.7 26.7 1 298 124 411 124 412 0.91 2 2 0.44 1.6e+04 -4.2 15.1 1 45 409 455 409 482 0.73
Sequence Information
- Coding Sequence
- ATGGGGCATAAATCTGAACTGGCTACACCTCAGAATAGTGACGATGAAAGCGGAGATGCTTTTACAGATGGCGATTTTGGTGATTCAGGTGATGAAAATGTTATAGAGAGAAATGATAGTATAAAAACATCGCATATTCCTATTAATGAAACCAAAAACGAGGATATTCACAAAATGAATGGATCAACAAATGGTTTTTCTAAAAATACAGATTTTGAAGAACAACCTAGACATTTAGTTCGAACCATTAGTGAGGCTCATTCTAGTGATGTTGAGAATCCAAACATACACCTATCAGACCTTCGCAGGGACTCTCATGGTGACCAAAGCCCATCGATAGTCGGGATTCTTGGAGACCAGCAAAATCACGCTGAGCAGCGACTGGCGGCGCGTCGCGCTGCTAGGGCAGAGGCGCGTGAAATCCGCATGCGCGAGTTAGAACGGCAGCAGAGAGAACAGGAAGACCATGCCGATAAAGCATATGACATGTATGCGGAGACGGTGGGGCGGCGGGACCGCACACGCTTGGCGGCGCTCAGTCCCGCCAGCTCCGTGCACTCACCGCGGAGAAGTTCCGAAGACTCCGTCGACGATCTCTTCAGTATGAAGGATCTTAGGCACGAGTTAAAAGAAGTGGAGGAAAAATTCCGCAAGGCGATGATCTTGAATGCGCAGTTGGACAACGACAAGGCGGCTCTCGGTTACCAGCTGGAGTTGCTCAAGGACAGGATAGAGGAGCTCCACGAGGAATACGCACAGTTACAGCGAGAGCACAGAGAGAAGTGTTCGTCCCTGGAGCGTGTTAAGCGCGAGTTCGAGTCGGTGTCCCGCGAGCTGAGCGCGGCGCGTGACGCGGTGCGAGCGCGTGACtgcgcggcggcggcggccgGCTTCGCGTTCGTGGAGGCGGCCGCGCTGGACGCCGTGCCCGACAACGCGGGCCAGGCCGTCGGGGCCGTGCCACCGCTCGCGCTCGTCAGCCATCACGCTGAGCAGCTGCTCAACGACGCCGGGGAGGGAACGCTAGATGTACGGTTGCAGAATTTGCTAAGTTCTAAACAGTCATTGGAGTCAGAAGTTCGAAAATTGAAATTGCAATTGAACGAGGAACGCGCCGCCAGACAGAACGGTGTAGCGAACCATCACGACCAGGAGTATGAAAATGAatTGGAGTCAGCTCGCAAGGGCCTGTCGGAGGCGAAGGGCCGCGCCGCGCGCGCCGAGGCGGAGGCGGCGCTGCACGCGGCGCACGTGGCGCGCCTCGAGGCGCAGCTCGCCCGCCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGCCCGTGACGCATTAAACCGAGTTGAAGAACTGGAGACTGAGAACAGCCACCTGACGAAACGATTAGACAAACTCAAGAACGCTAAATCAGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MGHKSELATPQNSDDESGDAFTDGDFGDSGDENVIERNDSIKTSHIPINETKNEDIHKMNGSTNGFSKNTDFEEQPRHLVRTISEAHSSDVENPNIHLSDLRRDSHGDQSPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRDRTRLAALSPASSVHSPRRSSEDSVDDLFSMKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSLERVKREFESVSRELSAARDAVRARDCAAAAAGFAFVEAAALDAVPDNAGQAVGAVPPLALVSHHAEQLLNDAGEGTLDVRLQNLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELESARKGLSEAKGRAARAEAEAALHAAHVARLEAQLARLRARQDHQDEHEEQLKQERRKLQREARDALNRVEELETENSHLTKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01075459;
- 90% Identity
- iTF_00157222;
- 80% Identity
- -