Dmen021251.1
Basic Information
- Insect
- Diaphora mendica
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949125395.1
- Location
- OX421318.1:27021760-27044033[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-79 2e-74 252.1 25.9 1 298 124 414 124 415 0.92 2 2 1.6 4e+04 -5.0 16.0 1 49 412 459 412 486 0.73
Sequence Information
- Coding Sequence
- ATGGGGCATCATTCTGAACTGGCTACACCTCAGAATAGTGACGATGAAAGCGGAGGTGCTTTTACAGATGGCGATTTTGGTGATTCAGATGATGAAAATGTTATAGAAAgaaatgataatataaaaacaTCGCATATTCCTATTAACGAAACCAAAAACGAGGATCTTCACAAAATGAATGGATCAACAAATGGTTTttctaaaaacaccgattttgAAGAACAACCTAGACATTTAGTTCGAACCGTTAGTGAGGCTTATTCTAGTGATGTTGAGAATTCAAACATACACCTATCAGACCTTCGCAGGGATTCTCACGGTGACCAAAGCCCATCAATAGTCGGGATACTTGGAGATCAACAAAATCACGCTGAGCAGCGGTTGGCGGCGCGTCGCGCTGCTAGGGCAGAGGCGCGTGAAATCCGCATGCGCGAGTTAGAACGGCAGCAGAGGGAACAGGAAGACCATGCCGACAAAGCATATGACATGTATGCGGGTAAGACGGAGACGGTGGGGCGGCGGGACCGCACACGCCTGGCGGCGCTGAGCCCCGCCAGCTCCGTGCATTCACCGCGGAGAAGTTCTGAAGACTCCGTCGACGATCTCTTCAGTATGAAGGATCTTAGGCACGAGTTGAAAGAGGTAGAGGAAAAATTCCGCAAGGCGATGATCTTGAATGCGCAGTTGGACAACGATAAGGCGGCGCTCGGCTACCAGCTCGAGTTGCTTAAGGATAGGATAGAGGAGCTCCACGAGGAATACGCACAGTTACAGCGGGAGCACAAAGAGAAGTGTTCGTCCCTGGAGCGTGTTAAGCGCGAGTTCGAGTCGGTGTCCCGCGAGCTGAGCGCGGCGCGTGACGCGGTGCGGGCGCGTGACTGCGCGGCCGCGGCGGCCGGCTTCGCGTTCGTGGAGGCCGCCGCGCTGGACGCCGTGCCCGACCACGCGGGCCACGCCGTCGGGGCCGTGCCGCCACTCGCGCTCGTCAGCCATCACGCCGAGCAGCTGCTCAACGACGCCGGGGAGGGGACGCTAGATGTACGGTTGCAGAATTTGTTAAGTTCTAAACAGTCATTGGAGTCAGAAGTTcgaaaattgaaattgcaatTAAACGAGGAACGCGCCGCCAGACAGAACGGTGTAGCGAACCATCACGACCAGGAGTATGAAAATGAATTGGAGTCAGCTCGTAAGGGCCTGTCGGAGGCGAAGGGTCGCGCCGCCCGCGCCGAGGCGGAGGCAGCCCTACACGCCGCGCACGTGGCGCGCCTCGAGGCGCAGCTCGCCCGCCTGCGCGCGCGGCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGCCCGTGAAGCATTGAACCGAGTTGAAGAACTGGAGACTGAGAACAGCCACCTGACGAAACGACTAGACAAACTCAAGAACGCTAAATCAGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MGHHSELATPQNSDDESGGAFTDGDFGDSDDENVIERNDNIKTSHIPINETKNEDLHKMNGSTNGFSKNTDFEEQPRHLVRTVSEAYSSDVENSNIHLSDLRRDSHGDQSPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTETVGRRDRTRLAALSPASSVHSPRRSSEDSVDDLFSMKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSLERVKREFESVSRELSAARDAVRARDCAAAAAGFAFVEAAALDAVPDHAGHAVGAVPPLALVSHHAEQLLNDAGEGTLDVRLQNLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELESARKGLSEAKGRAARAEAEAALHAAHVARLEAQLARLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01075459;
- 90% Identity
- iTF_00157222;
- 80% Identity
- -