Tjac006657.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_947561695.1
- Location
- OX387217.1:20686289-20702570[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.13 3.3e+03 -2.4 0.2 56 90 67 103 48 107 0.50 2 3 3.1e-78 7.9e-74 249.2 26.8 1 297 124 413 124 415 0.89 3 3 0.39 1e+04 -4.0 13.5 1 48 412 458 412 476 0.73
Sequence Information
- Coding Sequence
- ATGGGGCATCAATCTGAATGGGCTACACCTCACAATAGTGACGACGAAAGTGGAGATGCTTTTACAGATGGTGATTTTGGCGATTCAGATGAAGAAAATATTATAGAAGGAAATGATAATATAAATGGATCCTATATTGCCATTAACGAAGCCAAAAACGAGGATATTCACAAAATGAATGGAGCAACAAATGGTTACTCTAAAAACACAGATTTTGAAGACCAAAATAGACATATAGTTCGAACGAATAGTGAGGCTCACTCCAGTGATGTAGATAACCCAAATTTAAGCCTATCAGACCTTCGCCGAGATTCTCACGGCGACCAAAATCCCTCAATAGTCGGAATTCTTGGCGATCAGCAGAATCATGCTGAGCAGCGGTTGGCGGCGCGTCGGGCTGCTAGAGCAGAGGCGCGAGAAATTCGCATGCGTGAGTTGGAGCGCCAGCAGCGAGAACAGGAAGACCATGCAGATAAGGCATATGATATGTATGCAGAGACGGTGGGGCGGCGCGATCGCACCCGCCTGGCGGCGCTCAGCCCCGCCAGCTCTGTGCACTCGCCGCGGAGAAGCTCCGAGGACTCCGTAGATGATGTCTTCAGTATGAAAGATCTTAGGCACGAGTTAAAAGAAGTAGAAGAAAAGTTCCGAAAGGCGATGATCTTGAATGCGCAGTTGGATAACGACAAGGCGGCACTCGGCTACCAGCTGGAACTGCTTAAGGACAGGATAGAGGAGCTCCATGAGGAATATGCGCAGTTACAGCGCGAGCACAGAGAGAAGTGTTCATCCCTGGAGCGCGTGAAGCGCGAGCTGGAGTCGGTGACCCGCGAGCTGAGCGCGGCGCGGGATGCGGTGCGCGCGCGGGACTGCGCGGCGGCGGCGGCGGGCTTCGCCTTCGTGGAGGCTGCCGCTCTCGACGCGCCCGCCACCGCCACCACGGCCGCCGGACACGCTGTCGGCGCCGTGCCGCCTCTCGCGCTCATCAGCCACTCCGCCGAGCAGCTGCTCAACGACGCCGGCGAGGGCACGCTCGATGTGCGGTTGCAAAAGTTGTTAAGTTCCAAACAATCGCTGGAGTCAGAAGTTCGCAAGTTGAAGCTACAGTTGAACGAGGAGCGCGCCGCCAGACAAAACGGTGTAGCGAACCATCACGACCAGGAGTATGAGAATGAGTTGGAGGCGGCCCGCAAGTGCTCTTCGGAGGCGAAGGGGCGGGCGGCTCGCGCCGAGGCTGAGGCCGCTCTGCACGCCGCGCACGTCGCGCGCCTCGAGGCGCAGCTCGCGCGACTCAAGGCGCGCCAGGACCACCAGGATGAGCACGAGGAGCAGCTCAAGCACGAACGCCGCAAGCTGCAGCGGGAGGCACGTGAAGCTTTGAACCGAGTGGAAGAACTAGAGACAGAGAACAGCCACCTAACAAAACGACTGGACAAGCTCAAGAACGCAAAGTCAGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MGHQSEWATPHNSDDESGDAFTDGDFGDSDEENIIEGNDNINGSYIAINEAKNEDIHKMNGATNGYSKNTDFEDQNRHIVRTNSEAHSSDVDNPNLSLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRDRTRLAALSPASSVHSPRRSSEDSVDDVFSMKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSLERVKRELESVTRELSAARDAVRARDCAAAAAGFAFVEAAALDAPATATTAAGHAVGAVPPLALISHSAEQLLNDAGEGTLDVRLQKLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELEAARKCSSEAKGRAARAEAEAALHAAHVARLEAQLARLKARQDHQDEHEEQLKHERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01075459;
- 90% Identity
- iTF_00157222;
- 80% Identity
- -