Tsen023024.1
Basic Information
- Insect
- Thumatha senex
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_948477245.1
- Location
- OX419729.1:3156499-3185059[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.018 6.5e+02 0.4 1.8 242 281 64 103 35 108 0.61 2 3 4.6e-78 1.7e-73 248.6 23.8 1 297 121 436 121 438 0.89 3 3 1 3.6e+04 -8.6 14.4 1 44 435 478 435 499 0.69
Sequence Information
- Coding Sequence
- ATGGGACGTCGATCTGAAGTGGCTACACCACAAAATAGCGACGACGAAAGCGGAGATGCCTTTACAGACGGTGATTTCGGAGATTCAGACGATGAAACCATTATCGAAAGAAATGATGATAGCAAAGGATCCGCTTTAAACGAAGCCAAGAATGAAGATGTCCATAAAGTAAACGGAACCACCAACGGGTTTTCTAATGATTTGAAAGAGCAAAAACAGAATCATGTTGTTCGCAAGACTAGCGAGACCTACTCAAGCGATGCAGAAAATTCCAGCTTAATGCTTTCAGATTTACGTAGAGATTCTCACGGGGATCAAAATTCTTCAATAGTCGGCATTCTTGGCGATCAACAGAATCACGCGGAACAGCGATTGGCGGCGCGACGCGCTGCACGTGCGGAGGCGCGGGAGATCCGCATGCGCGAGTTAGAGCGGCAGCAGAGAGAACAAGAGGACCATGCTGACAAGGCGTATGACATGTACGGGAAGACCGGTAAGGACGATGTTTTGAACTTCATAGTAGTTAGGGGGTTGCGCAAAGGTTCTGGATGCAATGCTCAGTTCAGCCACTCAGAGACAGTGGGGCGGCGGGACCGCACTCGGCTCGCGGCGCTCAGTCCGGCCAGCTCCGTGCTCTCGCCGCGCCGCAGCTCCGAAGACTCCGTGGATGAAAGCTTCAGCATCAAAGATCTTAGACACGAGTTGAAAGAAGTGGAGGAGAAATTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAACTGCTTAAGGACAGGATAGAGGAGCTGCACGAGGAGTATGCGCAGTTACAGCGCGAACATAAAGAGAAATGCTCAAACCTGGAGCGAGTGAAACGCGAGCACGAGTCGGTGTCGCGGGAACTGGCAGCGGCCCGGGACGCGGTGAGAGCGCGCGAATGTGCCGCGGCAGCCGCAGGTTTCGCGTTCGTGGAAGCCGCCGCTCTCGACACCGCGCCTTCGGCCGCCGGGCCTGCCGTGGGGGCTGTGCCGCCGCTGGCCCTCGTGTCGCACCAGGCCGAACAGCTGCTCAACGATGTCGGCGAAGGCACGCTTGACGTGCGGTTGCAGAAGTTGTTGAGCTCGAAGCAGTCCCTGGAGTCTGAGGTCCGCAAGTTGAAGCTACAGCTGAACGAGGAACGTGCCGCCAGACAGAACGGAGTGGCCAACCATCACGACCAAGAGTATGAAAACGAACTGGAGAGCGCACGGAAGAGCGCGGCGGAAGCGAAAGGTCGGGCGGCCCGAGCAGAGGCAGAGGCGGCTCTTCTGGCAGCGCACGTGGCGCGGCTGGAGGCGCAGCTGGCGAGGGCCCGGGCGCGCCAGGACCACCAGGACGAGCACGAGGAGGCGCTGAAGCACGAGCGGCGTCGTCTGCAGCGCGAGGCCCGCGAGGCTTTGAACCGTGTCGAAGAACTGGAGACGGAGAACAGCCACCTGACGAAACGACTGGACAAACTGAAGAACGCGAAATCCGCACTCCTAAAGGACCTGTGA
- Protein Sequence
- MGRRSEVATPQNSDDESGDAFTDGDFGDSDDETIIERNDDSKGSALNEAKNEDVHKVNGTTNGFSNDLKEQKQNHVVRKTSETYSSDAENSSLMLSDLRRDSHGDQNSSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYGKTGKDDVLNFIVVRGLRKGSGCNAQFSHSETVGRRDRTRLAALSPASSVLSPRRSSEDSVDESFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSNLERVKREHESVSRELAAARDAVRARECAAAAAGFAFVEAAALDTAPSAAGPAVGAVPPLALVSHQAEQLLNDVGEGTLDVRLQKLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELESARKSAAEAKGRAARAEAEAALLAAHVARLEAQLARARARQDHQDEHEEALKHERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01075459;
- 90% Identity
- -
- 80% Identity
- -