Pmus005095.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963691645.1
- Location
- OY829102.1:2142458-2163097[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.097 2.7e+03 -2.0 0.3 65 91 75 102 37 106 0.61 2 3 3.9e-81 1.1e-76 258.7 20.0 1 298 122 412 122 413 0.93 3 3 1 2.8e+04 -5.8 15.5 1 48 410 456 410 483 0.73
Sequence Information
- Coding Sequence
- ATGGGGCAACGGTCTGAAGTGGCTACCCCTCAAAATAGTGACGACGAAAGTGGAGATGCTTTTACTGATGGCGATTTTGGCGATACAGATGATGAAACTGTTATAGAAAGAAACGGTGATGTGAACGGATCCAATATGTCTACAAACGAACCAAAGAACGGTGATATTCACAAAGTAAATGGAGCAACCAATGGCTTTTCTAATGATGTAAAAGAACAACCCAGGCATATAGCTCGCACGATAAGCGAGACTCACTCAAGCGATGCAGAGAACTCGAGCTTCTCCCTATCGGACCTACGCAGAGACTCTCACGGCGACCAGAATCCCTCAATAGTCGGCATTCTTGGCGACCAACAGAACCACGCAGAACAGCGGTTGGCGGCGCGTCGCGCTGCTCGGGCGGAGGCGCGGGAAATCCGCATGCGGGAATTGGAGAGACAGCAGAGGGAACAAGAAGACCATGCTGACAAGGCGTATGATATGTACGGGGGAAAGACAGAGACAGTGGGACGACGCGACCGCACGAGACTGGCGGCGCTTAGCCCCGCCAGCTCGGTGCACTCGCCGCGCCGCAGTTCAGAGGACTCGGTTGACGACACCTTCAGCATCAAGGACCTTAGACACGAGTTGAAGGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATTCTGAACGCGCAGTTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAACTGCTCAAGGACAGGATAGAGGAGCTCCACGAGGAATACGCGCAGCTACAGcgCGAGCACAGAGAGAAATGCTCTGCCTTGGAACGGGTGAAGCGCGAACACGAGTCCGTGTCCCGCGAGCTGGGCGCGGCGCGGGACGCGGTGCGCGCGCGGGagtgcgcggcgggcgcggcgggcttCGCGTTCGTGGAGGCGGGCGCGCTGGACGCCGCGCCGCCCGGCGTGGGGCCCGCCGTCGGCGCCGTGCCGCCGCTCGCGCTCGTCTCGCACTCCGCCGAGCAGCTGCTCAACGACGCCGGGGAAGGACCGCTAGACGTGCGGTTGCAAAAGTTGCTGAGTTCGAAACAGTCCCTGGAGTCGGAAGTTCGCAAGCTGAAGCTACAGCTGAACGAGGAGCGCGCTGCACGGCAGAACGGAGTGGCCAACCATCACGACCAGGAGTACGAGAACGAGTTGGAGAGCGCGCGCAAGAGCGTGTCGGAGGCGAAGGGGCGCGCGGCGCGGGCCGAGGCGGAGGCCGCGCTGCACGCCGCGCACGTCGCGCGACTCGAGGCGCAGCTCGCCCGCCTGCGCGCGCGGCAGGACCACCAGGACGAGCACGAGGAGGCGCTCAAGCACGAGCGCCGCAAGCTGCAGCGCGAGGCGCGTGAAGCTCTAAACCGAGTCGAAGAACTGGAGACTGAAAACAGCCATCTGACGAAACGACTAGACAAACTCAAGAACGCGAAGTCAGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPQNSDDESGDAFTDGDFGDTDDETVIERNGDVNGSNMSTNEPKNGDIHKVNGATNGFSNDVKEQPRHIARTISETHSSDAENSSFSLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYGGKTETVGRRDRTRLAALSPASSVHSPRRSSEDSVDDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSALERVKREHESVSRELGAARDAVRARECAAGAAGFAFVEAGALDAAPPGVGPAVGAVPPLALVSHSAEQLLNDAGEGPLDVRLQKLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELESARKSVSEAKGRAARAEAEAALHAAHVARLEAQLARLRARQDHQDEHEEALKHERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01075459;
- 90% Identity
- iTF_00908866;
- 80% Identity
- -