Lqua004811.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963576445.1
- Location
- OY754877.1:16985968-17003558[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.11 2.8e+03 -2.2 0.2 68 89 78 100 36 105 0.55 2 3 9.5e-81 2.4e-76 257.4 23.6 1 298 122 408 122 409 0.94 3 3 0.96 2.5e+04 -5.3 15.5 1 49 406 453 406 480 0.72
Sequence Information
- Coding Sequence
- ATGGGACATCGATCTGAAGTGGCCACACCTCGCAATAGTGACGACGAGAGTGGAGATGCTTTTACGGATGGTGATTTTGACGATTCAGATGATGAAACTATCAAAGAAAGAAACGGTGATGTAAATGGATCCTCTATGCCTATGAACGAAGCAAAGAACGACGATATTCACAAAGTAAATGGAGCTACAAATGGCTTTTCTAATGATTTGAAAGAACAACCCAGGCATTTAGCCCGTAGCATTAGCGAGACTCACTCAAGTGATGCCGAGAACGCGAGCTTCTCCCTATCGGACCTACGCAGAGACTCTCACGGCGACCAAAATCCCTCAATAGTCGGCATTCTTGGCGGCCAACAGAATCACGCGGAACAGCGGTTGGCGGCGCGTCGCGCTGCTCGGGCGGAGGCGCGGGAGATTCGCATGCGCGAGTTGGAACGACAGCAGAGAGAACAGGAGGATCATGCCGATAAAGCATATGATATGTACGGGGGAAAGACAGAGACAGTGGGGCGGCGTGACCGCACGCGACTGGCGGCGCTCAGCCCCGCCAGCTCAGTGCACTCGCCGCGCCGCAGCTCCGAAGACTCCGTCGACGACACCTTCAGCATCAAGGATCTTAGACACGAGTTAAAGGAAGTGGAGGAGAAATTCCGCAAGGCGATGATATTGAATGCGCAGTTGGACAACGACAAGGCGGCACTCGGCTACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAGCTCCACGAGGAATATGCGCAGTTACAGCGTGAGCACAGAGAGAAGTGCTCGATGCTGGAGCGCGTGAAGCGCGAGCACGAGTCGGTGTCGCGCGAGCTGAGCGCTGCGAGGGACGCGGTGCGCGCGCGCGAGTGCGCGGCGGAGGCGGCGGGCTTCGCGTTCGTGGAGGCGGGCGCGCTGGACACCGCCGGCCCGCCCGTAGGGGCCGTGCCGCCGCTCGCGCTCGTGTCGCACTCCGCGCAGCAGCTGCTCAACGACGCGGGCGAGGGGCCGCTGGACGTGCGGTTGCAAAACTTGCTAAGTTCGAAACAATCCCTGGAGTCCGAAGTTCGCAAGCTGAAGTTACAGCTGAACGAGGAGCGAGCCGCGAGGCAGAACGGCGTGGCCAACCATCACGACCAGGAGTACGAGAACGAGCTGGAGACGGCGCGCAAGAGCCTGTCGGAGGCGAaggggcgggcggcgcgcgcggaGGCGGAGGCGGCGCTGCACGCGGCGCACGTGGCGCGCCTGGAGGCGCAGCTGGCGCGCCTGCGGGCCAGGCAGGACCACCAGGACGAGCACGAGGAGGCGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGCGAGGCGCGTGAAGCACTAAACCGAGTTGAAGAATTGGAAACAGAGAACAGCCACCTGACGAAACGACTAGACAAACTCAAGAACGCCAAGTCCGCGCTACTCAAGGACCTGTGA
- Protein Sequence
- MGHRSEVATPRNSDDESGDAFTDGDFDDSDDETIKERNGDVNGSSMPMNEAKNDDIHKVNGATNGFSNDLKEQPRHLARSISETHSSDAENASFSLSDLRRDSHGDQNPSIVGILGGQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYGGKTETVGRRDRTRLAALSPASSVHSPRRSSEDSVDDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSMLERVKREHESVSRELSAARDAVRARECAAEAAGFAFVEAGALDTAGPPVGAVPPLALVSHSAQQLLNDAGEGPLDVRLQNLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELETARKSLSEAKGRAARAEAEAALHAAHVARLEAQLARLRARQDHQDEHEEALKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01075459;
- 90% Identity
- iTF_00636422; iTF_00404942; iTF_01166714;
- 80% Identity
- -