Nrib009903.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nasonovia ribisnigri
Gene Symbol
TFIP11
Assembly
GCA_027563275.1
Location
JANEHQ010000078.1:387809-392461[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 0.3 4.9e+03 -2.3 0.0 137 155 284 301 279 326 0.73
2 3 1.8e-70 2.9e-66 224.7 20.9 9 275 389 688 382 688 0.97
3 3 0.36 5.9e+03 -2.6 0.1 237 259 695 717 690 731 0.52

Sequence Information

Coding Sequence
ATGTCTGACGATGAAATGGAAAAATTTGAAATTACTGATTTTGATTTGGACAATGAATTTAATATGAACAGACCTCAAAGACGACTAACTAAAAATCAAGCAATTTATGGGATTTGGGCCGATGAAGAAGGTAATGATAGTGACGATGAACCTTCAGGTTTTGGAGGTCGTAGAAACAAAGATAAGAAATATAAACAAAACTACACTGCTCCTGTTTCATTTGTGGCTGGAGGAGTTCAACAGGCTGGCAAGGATAAAAAAGAAATTAAATCTGAAGAAAAAAAAGGCAACGAGTCGCACAATTTGGAAGATAATATCTCTGCATCTAGTGATGAAGAAAAACCCCAATTTAGTTTTGACATTGATCAAGAAGTGGCAGGATTACGAAAGAAACGATCTCAAGTAAACTCAAGACTAATAGACAAAGGGTTAGGAGATTGGGAAAAACATACAAAAGGAATTGGTGCAAAACTGCTGCTCGGAATGGGTTACCAACCAGGTCAAGGTTTAGGAAAAAAACTTCAAGGTATTTTGGCTCCAATTGAAGCAAATTTAAGAAAAGGAAGAGGAGCAATTGGTGCATATGGTCCTGAGTCTAAAACTAAACCAATGAAAATAGAAAAATTAGCAGAGAAATCAAAAGATAACAAAGTTCTTGTAAGTGGTTGGAGAAAAGCACGTAAAGCTGAAAAACTTCAATATAATTATAAGACCGCTGAGGAAGTAATTGAAGAAAGCAAACAACCCGGACAAAGAAAACGAGAATTCAATGAACTAAGTAGAGTAAAAGTAATTGATATGACTGGCCCAGAACAAAGAATTTTATCTGGATATCATGCTATATCAGGTGTTAAAAAGCCAATAGATCAGTGGGAAATTCGAAAGGATAAGAAATACTCAAATTTTGATCTACCTGAATTATTGCACAATCTCAACCTATTAGTTGAAATAGCTGAACAAAACATTGTTACTAACAATCAAGAACTTTGTAATTCAGAGGATCGGCTTATTGTCATTGAACAAGAAACTAAAAAATTAGGAGAAAATATAAATGAAAAAAATAATTCAATTGAATCTCTTGAAAAAATGATAATTATTATGGAATCATTAAATGATGCATTAAAAAAAAAAATGTTAGATAGTAGCCAAGCTATACAACTTTGCACAGAAATGAAAGAAAAATACTACCCAGATTATCGGCTGAATGGTGGATCAGTTTTTGCTTTATCAATTTCTCAAATATTGATTAAAGAAATGCTATCAACATGGAACCCATTACAAGATCCTTCTATGCCTTTCAAAGAACTCAATAAATGGAAAGAATTATTAACTTTAAATGAGCCATCTGCTGTTGGTTTTCAGTCTAGTGATGAATTTCAAACATTAATTTGGCAAGAATGGGTACCTCAAGTTCAAAAAGCATGCAGGCAATGGAATTGTCGAGATTGTAACAGTATGTTGAAACTCATTGAACAGTCATCTGAATTGATACCATCTGACATAATTAATCATGTTCTCGAAAATATGATTTTACAACAAATACAGTTGGGAGTTGAACAATGGGATCCGTTGACTGATCTTGTACCAATTCATTTGTGGATTCACCCTTGGCTGCCATATTTAAGTGAGTCAAGTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAACATTTTGAAACAATTGTTTATCCTACACTGAGGCAAAAATTAAGTGTAGCATTAAATGCCTGGCATCCATCTGACAATTCTGCTAAGCTGATGCTTCAACCATGGATAAATGTTTTCCAACAAGGCTACATGGAAGCTTTTCTAATTAAAAATATTGTTCCTAAATTACAAGCTGCTCTACATACTTTCGTTATAAACCCACATCATCAACAATTGGACAATTGGAATTGGGTAAATGCATGGTCAGATGTATTACCATTACCTACATTAGTGGAATTGTTAGACCAACATTTTTTTCCAAATTGGCTTAAAACACTAACCATGTGGATTAATATGAATCCCAACCATGAACAAATAAGTAACTGGTATACAGGATGGAAGTCTTTAATGCCTGCTGTTATTGTTGAACATCCAACTATTAAAGGGAGGTTTCATTCTGCTTTAGATATAATGAGCCGAGCAGTTGGAGGACCTTCTATGCCACAACCACCTCCACCACCTACAATTCATGGTGGTCTAGCTGAAGCTGTACGTACTGCATCACAAATGCCACATGGCTTTAAAGAGTTAGTACAAAAGCGTTGCGAGGAACGGGGTATTTTATGGATGCCCATTTCTGGTCGTTTTAGAGAAGCTAAACAAGTATATAGATGTGGAGCAAGGCTTCAAGCATTTATTGACCGTGGAGTTTTATTTGTTTGCCAAGATGGAATAAATTTTGCTCCTATGTCTGTACAATCCATGTTAGAACTATGCGAATAA
Protein Sequence
MSDDEMEKFEITDFDLDNEFNMNRPQRRLTKNQAIYGIWADEEGNDSDDEPSGFGGRRNKDKKYKQNYTAPVSFVAGGVQQAGKDKKEIKSEEKKGNESHNLEDNISASSDEEKPQFSFDIDQEVAGLRKKRSQVNSRLIDKGLGDWEKHTKGIGAKLLLGMGYQPGQGLGKKLQGILAPIEANLRKGRGAIGAYGPESKTKPMKIEKLAEKSKDNKVLVSGWRKARKAEKLQYNYKTAEEVIEESKQPGQRKREFNELSRVKVIDMTGPEQRILSGYHAISGVKKPIDQWEIRKDKKYSNFDLPELLHNLNLLVEIAEQNIVTNNQELCNSEDRLIVIEQETKKLGENINEKNNSIESLEKMIIIMESLNDALKKKMLDSSQAIQLCTEMKEKYYPDYRLNGGSVFALSISQILIKEMLSTWNPLQDPSMPFKELNKWKELLTLNEPSAVGFQSSDEFQTLIWQEWVPQVQKACRQWNCRDCNSMLKLIEQSSELIPSDIINHVLENMILQQIQLGVEQWDPLTDLVPIHLWIHPWLPYLSESSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKHFETIVYPTLRQKLSVALNAWHPSDNSAKLMLQPWINVFQQGYMEAFLIKNIVPKLQAALHTFVINPHHQQLDNWNWVNAWSDVLPLPTLVELLDQHFFPNWLKTLTMWINMNPNHEQISNWYTGWKSLMPAVIVEHPTIKGRFHSALDIMSRAVGGPSMPQPPPPPTIHGGLAEAVRTASQMPHGFKELVQKRCEERGILWMPISGRFREAKQVYRCGARLQAFIDRGVLFVCQDGINFAPMSVQSMLELCE