Rpad025734.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhopalosiphum padi
Gene Symbol
TFIP11
Assembly
None
Location
scf7180000007991.1167421:36853-41295[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.8e-79 3.7e-75 253.6 19.1 4 275 386 651 384 651 0.97
2 2 0.32 4.1e+03 -2.4 0.1 237 260 658 681 653 694 0.53

Sequence Information

Coding Sequence
ATGTCTGACGATGAAATGGAAAAATTTGAAATCACTGATTTTGATTTGGACAATGAATTTAATATGAACAGGCCCCAAAGACGACTGACAAAAAATCAAGCTATTTACGGAATTTGGGCTGATGAAGAAGGTAATGATAGTGACGATGAACCTTCAGGTTTTGGGGGCCGTAGAAAGAAAGATAAGAAATATAAACAAAACTATACTGCTCCCGTTTCATTTGTGGCTGGAGGAGTACAGCAGGCTGGCAAAGAAAAAAAAGAAATTAAAACTGAAGAAAAAAAAGGCAATGAAACGTACAATTTGGAAGATAATATCTCTGCGTCTAGTGATGAAGAAAAACCAGCATTTAGTTTTGATATTGATCAAGAATTGGCAGGATTACGAAAGAAACGATCCCAAGTAAATTCAAGTCTAATAAACAAAGGATTAGGAGATTGGGAAAAACATACAAAAGGAATTGGTGCAAAATTATTGCTCGGAATGGGTTACCAACCAGGTCATGGTTTAGGAAAAAAACTTCAAGGTATTCTGGCTCCAATTGAAGCAAATTTAAGAAAAGGAAGAGGAGCGATTGGTGCATATGGTCCTGAGTCTAAAACAAAACCAATGAAAGTAGATAGTGAAAAAACAGCAGATAAATCAAAAGATAATAAAGTTGTAGTTAGTGGTTGGAGAAAAGCGCTTAAAACTGAAAAAACTCAATATATTTATAAAACAGCTGAAGAAGTGATTGAAGAAAGTAAACAACCAGGGCAAAGAAAACGAGAATTCAATGAACTAAGTAGAGTAAAAGTAATTGATATGACTGGTCCTGAACAGAGAATTTTATCTGGATATCATGCTATATCGGGTGTTAAAAAACCAACAGATCAGTGGGAAATAAGAAAAGATAAAAAATACTCAAATTTTGATCTACCTGAGTTATTACACAATCTCAACTTATTAGTTGAAATAGCTGAACAAAACATAATTACTAATAATCAAGAACTTTGTAATTCAGAAGATCGACTTATTGTCATTGAACAAGAAACTACAAGATTAGGAGAAAGTATTAATGAAAAAAATAAATCAATTGAATCTCTTGAAAAAATGATAATTGTCATGGAATCTTTAAATGATGCATTAAAAAAAAATATGTTAGATAGTAGTCAAGCTATAAAACGTTTAACAGAAATGAAAGAAAATTACTACCCTGATTATCGGCTAAATGGTGGATCAGTTTTAGCTTTATCAATTTCTCAAATATTGATTAAAGAAATGCTATCTACGTGGGACCCATTACAAGATCCAACAATGCCTTTCGAAGAACTTAAAAAATGGAAAGAACTATTAACTTTAAATGAGCCATGTGCTGTTGGTTATCAATCAAGTGATGAATTTCAAACATTAATTTGGCAAGAATGGGTACCTCAAGTTCAAAAAGCATGCGGACAATGGAAATGTCGAGATTATAACAGTATGTTGAAACTTGTTGAACAATCAGCTGAATTAATACCAACTGATATAATAACTAAAGTTCTTGAAAATATGATTTTACCTCAAATACAGTCGGAAGTAGAACAATGGGATCCATTGACTGATCTTGTACCAATCCATTTGTGGATTCACCCATGGTTGCCATATTTGAGTAAACATTTTGAAACAATTGTTTATCCTACTCTAAGACAAAAATTAAGTGTAGCATTAAATGCCTGGCATCCATCTGACAGTTCTGCTAAGCTGATGCTCCAACCATGGATAAATGTTTTTCAACAAGGCTACATGGAAGCTTTTCTAATAAAAAATATTGTTCCTAAATTACAAGCGGCTCTGCATGCTTTTGTTATCAACCCACATCATCAACAATTGGACAATTGGAATTGGGTTAATGCATGGTCAGATGTATTACCATTGCCCACATTGGTGGAATTGTTGGACCAACACTTCTTTCCTAAATGGCTTAAAACACTTACTATGTGGATAAATATGAACCCCAATCACGAACAAATAAGTAATTGGTATACGGGATGGAAATCTTTAATGCCTGCTGTTATTGTTGAACATTCAACCATTAAAGGGAGATTTCATTCAGCTTTGGATATAATGAGCCGAGCAGTTGGAGGACCTTCTATGCCTCAACCACCTCCACCACCAACAATTCATGGTGGTTTAGCTGAAGCTGTACGTACTGCATCACAAATGCCACATGGCTTTAAAGAATTAGTACAAAAGCGTTGTGAGGAACGAGGTATTTTATGGATGCCTATTTCTGGTCGTTTTAGAGAAGCTAAACAAGTATATAGATGTGGAGCAAGGCTTCAAGCATTTATCGACCGTGGAGTTTTATTTGTTAGTCAAGATGGAACAAATTTTGCTCCAATGTCGGTACAATCCATGTTAGAATTATGTGAATAA
Protein Sequence
MSDDEMEKFEITDFDLDNEFNMNRPQRRLTKNQAIYGIWADEEGNDSDDEPSGFGGRRKKDKKYKQNYTAPVSFVAGGVQQAGKEKKEIKTEEKKGNETYNLEDNISASSDEEKPAFSFDIDQELAGLRKKRSQVNSSLINKGLGDWEKHTKGIGAKLLLGMGYQPGHGLGKKLQGILAPIEANLRKGRGAIGAYGPESKTKPMKVDSEKTADKSKDNKVVVSGWRKALKTEKTQYIYKTAEEVIEESKQPGQRKREFNELSRVKVIDMTGPEQRILSGYHAISGVKKPTDQWEIRKDKKYSNFDLPELLHNLNLLVEIAEQNIITNNQELCNSEDRLIVIEQETTRLGESINEKNKSIESLEKMIIVMESLNDALKKNMLDSSQAIKRLTEMKENYYPDYRLNGGSVLALSISQILIKEMLSTWDPLQDPTMPFEELKKWKELLTLNEPCAVGYQSSDEFQTLIWQEWVPQVQKACGQWKCRDYNSMLKLVEQSAELIPTDIITKVLENMILPQIQSEVEQWDPLTDLVPIHLWIHPWLPYLSKHFETIVYPTLRQKLSVALNAWHPSDSSAKLMLQPWINVFQQGYMEAFLIKNIVPKLQAALHAFVINPHHQQLDNWNWVNAWSDVLPLPTLVELLDQHFFPKWLKTLTMWINMNPNHEQISNWYTGWKSLMPAVIVEHSTIKGRFHSALDIMSRAVGGPSMPQPPPPPTIHGGLAEAVRTASQMPHGFKELVQKRCEERGILWMPISGRFREAKQVYRCGARLQAFIDRGVLFVSQDGTNFAPMSVQSMLELCE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01037788;
90% Identity
iTF_00184574;
80% Identity
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