Cova009678.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chaetogeoica ovagalla
Gene Symbol
TFIP11
Assembly
GCA_032441825.1
Location
CM063733.1:2047561-2053341[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 0.16 1.8e+03 -1.4 0.0 137 153 287 302 281 326 0.75
2 3 1.1e-77 1.3e-73 248.3 17.8 7 275 390 652 385 652 0.97
3 3 0.26 2.9e+03 -2.1 0.1 234 260 656 682 653 694 0.65

Sequence Information

Coding Sequence
ATGTCGGACGACGAAATggagaaatttgaaatcacCGACTATGATTTGGACAATGAATTTAACATGAACAGACCCAAAAGACGGCTGACAAAAAACCAAGCAATCTATGGAATTTGGGCTGATGAAGAAGGCAAAGGCGATAGTGATGATGAAATTTCTGGTTTTAGTGGCCGCAGAAAAAAAGACaagaaatataaacaaaactaCACAGCTCCAGTTTCATTTGTAGCTGGAGGTATTCAGCAATCTAGCaaagataaaaaagaaattaaaactgAAGAAAAGAATGAAGATGAAACAGAAGATATTGATCATCATATATCTGCATCTAGtgaTGAAGAAAAACCTACCTTTAGTTTTGATATTGATCAAGAATTGGCGggtttacgaaaaaaacaacCTCAAATGAATTCAAGAATTACAAACAAAGGATTAGGAGATTGGGAAAAACATACAAAAGGCATTGGAGCAAAACTATTGCTTGGaATGGGCTATCAACCAGGTCATGGCTTAGGGAAAAAACTTCAAGGTATTACAGCTCCAATTGAAGCCAATTTAAGAAAAGGAAGAGGAGCAATTGGTGCATATGGTCCGGAGTCTAAAACCAAACCAATGAAAACAGATAGTGGACGAACATCAGATAAAACCAAAGATACTAAAGTTTCTGTACATGGTTGGagaaaagtattgaaaacagaaaaaacacaatatatgtataaaacatctGAAGAAGTAATTGAAGAGAGCAAACATCCAGGACAAAGAAAAAGAGAGttcaaCGAACTAAGTAGAGTAAAAGTGATTGATATGACTGGTCCAGAACAAAGAGTTTTATCTGGATATCATGCTATTTCTGGTGTTAAAAAACCAATTGATGAATGGGATATACGAAAAGACAAAAAACTATCAAACTTTGATTTACctgaattattacataatctCAATCTTTTAGTTGAAATAGCTGAAcaaaacatTGTAACAAACAATCAAGAACTTTGCACTAATGAGGAACGcctaatttttattgaacgaGAGACTAGTATATtaagtgaaaatattaaacagaaGGATGAATCAATTGACTCTCTTGAAAAAATGATAATCATTatggattttttaaataatgcaataaaacaaaatatgttagATAGTAATCAAGccttaaaatgtttaacagaATTGAAAgAAAATTATTACTCAGATTATCGACTAAATGGTGGGTCAGTTTTAGCATTGTCGATTTCTGGAAtgttaattaagaaaaaactatCTACATGGGATCCATTACAAAATCCAACATTGCCTTTCGAGGAActaaataaatggaaaaaacttTTAACTTTAAATGAACCATGTGCTATTGGATTTCAATCAAGTGAAGAATTTCAAGCATTAATTTGGCAAGAATGGGTACCTCAAGTTCAAAAAGCATGCgggcAATGGCAATGTCGAGATTGTAATAGTATGTTAAAACTTATCGAACAGTCATTTGAGTTGATACCAATTGACATAATCAATAAAGTTCTTGAGAATATGATTTTACCAAAAATACAATCTGAAGTAGAACAATGGGACCCATTAACAGACGTTGTACCAATTCATCTATGGATTCACCCGTGGTTACCATATTTAAgtaaacattttgaaacaatTGTCTATCCTACTCTGAGACAAAAGCTAAGTACGGCTTTGAATGCTTGGCATCCATCTGACAATTCTGCTAAACTTATGCTCCAACCATGGATAAATGTTTTCCAGCAGGGCTACATGGAAtcttttctaataaaaaacattgttcCTAAATTACAAGCTGTTCTACAGACTTTTGTAATAAACCCACACCATCAACAATTAgACTGTTGGAATTGGGTGAATGCATGGTCGGATTTGTTACCATTGCCTTCATTAGTAGAATTACTAGACCAACACTTCTTTCCAAAGTGGCTTAAAACACTTACCATGTGGATAAATATGAACCCCAATCATGAGCAAATAAGTAATTGGTATACAGGGTGGAAGTCCTTAATGCCTGCTATTATTGTTGAACATCCAACAATTAAGGGGCGATTTCATTCTGCTTTGGATATAATGAGCCGAGCAGTTGGAGGACCTTCCATGCcgttaccaccaccaccacctacTATTCAAggTGGTCTTGCTGAAGCTGTTCGTACTGCATCGCAGATGCCTCATGGTTTTAAAGAATTGGTACAAAAACGTTGTGAGGAACGAGGCATTTTATGGATGCCTTTTCCTGGTCGTTTTAGAGAAGCCAAACAAATATACAGATGTGGAGCAAGGCTTCAAGCATATATTGACCGTGGCGTTTTATTTGTTAGTCAAGATGGTGTAAATTTCAGCCCGATGTCTATACAATCCATGTTAGAATtatgtgaataa
Protein Sequence
MSDDEMEKFEITDYDLDNEFNMNRPKRRLTKNQAIYGIWADEEGKGDSDDEISGFSGRRKKDKKYKQNYTAPVSFVAGGIQQSSKDKKEIKTEEKNEDETEDIDHHISASSDEEKPTFSFDIDQELAGLRKKQPQMNSRITNKGLGDWEKHTKGIGAKLLLGMGYQPGHGLGKKLQGITAPIEANLRKGRGAIGAYGPESKTKPMKTDSGRTSDKTKDTKVSVHGWRKVLKTEKTQYMYKTSEEVIEESKHPGQRKREFNELSRVKVIDMTGPEQRVLSGYHAISGVKKPIDEWDIRKDKKLSNFDLPELLHNLNLLVEIAEQNIVTNNQELCTNEERLIFIERETSILSENIKQKDESIDSLEKMIIIMDFLNNAIKQNMLDSNQALKCLTELKENYYSDYRLNGGSVLALSISGMLIKKKLSTWDPLQNPTLPFEELNKWKKLLTLNEPCAIGFQSSEEFQALIWQEWVPQVQKACGQWQCRDCNSMLKLIEQSFELIPIDIINKVLENMILPKIQSEVEQWDPLTDVVPIHLWIHPWLPYLSKHFETIVYPTLRQKLSTALNAWHPSDNSAKLMLQPWINVFQQGYMESFLIKNIVPKLQAVLQTFVINPHHQQLDCWNWVNAWSDLLPLPSLVELLDQHFFPKWLKTLTMWINMNPNHEQISNWYTGWKSLMPAIIVEHPTIKGRFHSALDIMSRAVGGPSMPLPPPPPTIQGGLAEAVRTASQMPHGFKELVQKRCEERGILWMPFPGRFREAKQIYRCGARLQAYIDRGVLFVSQDGVNFSPMSIQSMLELCE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01037788;
90% Identity
-
80% Identity
-