Rnym021030.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- TFIP11
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000038.1:1685644-1689680[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-79 3.6e-75 253.6 19.1 4 275 386 651 384 651 0.97 2 2 0.34 4.3e+03 -2.5 0.1 237 259 658 680 653 694 0.52
Sequence Information
- Coding Sequence
- atgtcTGACGATGAAATGGAAAAATTTGAAATCACTGATTTTGATTTGgacaatgaatttaatatgaacAGGCCCCAAAGACGACTGACAAAAAATCAAGCTATTTAcggaaTTTGGGCTGATGAAGAAGGTAATGATAGTGACGATGAACCTTCAGGTTTTGGGGGCCGAAGAAAAAAAgataagaaatataaacaaaactatACTGCTCCCGTTTCATTTGTGGCTGGAGGAGTACAGCAGGCtggcaaagaaaaaaaagaaattaaacctgaagaaaagaaaaacaatgaatCATACAATTTGGAAGATAATATCTCTGCGTCTAGtgaTGAAGAAAAACCAGCATTTAGTTTTGATATTGATCAAGAATTAGCAGGATTACGAAAAAAACGATCCCAAGTAAATTCAAGTCTAATAAACAAAGGATTAGGAGATTGGGAAAAACATACAAAAGGAATTGGTGCAAAATTATTGCTCggaatggGTTACCAACCAGGTCATGGTTTAGGAAAAAAACTTCAAGGTATTCTGGCTCCAATTGAAGCAAATTTAAGAAAAGGAAGAGGAGCGATtgGTGCATATGGTCCTGAGTCTAAAACTAAACCAATGAAAATAGATAGTGAAAAAACAGCAGATAAATCAAAAGATAATAAAGTTCTAGTAAGTGGTTGGAGAAAAGCGCTTAAAGCTGAAAaaactcaatatatttataaaacagctGAAGAAGTGATTGAAGAAAGTAAACAACCCGGGCAAAGAAAACGAGAATTCaatgaaCTAAGTAGAGTAAAAGTAATTGATATGACTGGTCCTGAACAGAGAATTTTATCTGGATATCATGCTATATCAGGTGTTAAAAAACCAACAGATCAGTGGGAAATacgaaaagataaaaaatactcAAATTTTGATCTACCTGAATTATTACACAATCTCAACTTATTAGTTGAAATAGCTGAACaaAACATAATTACTAACAATCAAGAACTATGTAATTCAGAAGATCGACTTATTGTCATTGAACAAGAAACTAAAAGATTAGGAGAAAgtatcaatgaaaaaaataaatcaattgaatctcttgaaaaaatgataattgtcATGGAATCTTTAAAtgatgcattaaaaaaaaatatgttagatAGTAGCCAAGCTATAAAGCGCTTAACAGAAATGAAAGAAAATTATTACCCAGATTATCGGCTAAATGGTGGATCAGTTTTAGCTTTATCaatttctcaaatattaattaaagaaatGCTATCTACATGGGACCCATTACAAGATCCAACAATGCCTTTTGAAGAACTCAAAAAATGGAAAGaactattaactttaaatgagCCATGTGCGGTTGGTTATCAATCAAGTGATGaatttcaaacattaattTGGCAAGAATGGGTACCTCAAGTTCAAAAAGCATGcggACAATGGAAATGTCGAGATTATAACAGTATGTTGAAACTTGTTGAACAATCAGCTGAATTAATACCAACTGACATAATAACTAAAGTTcttgaaaatatgattttacctCAAATACAGTCAGAGGTGGAACAATGGGATCCATTGACTGATCTTGTACCAATCCATTTGTGGATTCACCCATGGTTGCCATATTTAAgtaaacaTTTCGAAACAATTGTTTATCCTACTTTAAGACAAAAATTAAGTGTAGCATTAAATGCCTGGCATCCATCTGACAGTTCTGCTAAGCTAATGCTCCAACCGTGGATAAATGTTTTTCAACAAGGCTACATGGAAgcttttctaataaaaaatattgttcctaAATTACAAGCAGCTCTGCATGCTTTTGTTATCAACCCACATCATCAACAATTGGacAATTGGAATTGGGTTAATGCATGGTCAGATGTATTACCATTGCCCACATTAGTAGAATTGTTGGACCAACACTTCTTTCCTAAGTGGCTTAAAACACTTACTATGTGGATAAATATGAATCCCAATCACGAACAAATAAGTAATTGGTATACGGGATGGAAATCTTTAATGCCTGCTGTTATTGTTGAACATCCAACCATTAAAGGGAGATTTCATTCAGCTTTGGATATAATGAGCCGAGCAGTTGGAGGACCTTCTATGCCACAACCACCTCCACCACCAACAATTCATGGTGGTTTAGCTGAAGCTGTACGTACTGCATCACAAATGCCACATGGCTTTAAAGAATTAGTACAAAAGCGTTGTGAGGAACGAGGTATTTTATGGATGCCTATTTCTGGTCGTTTTAGAGAagctaaacaaatatatagatGTGGAGCAAGGCTTCAAGCATTTATTGACCGTGGAGTTTTATTTGTTAGTCAAGATGGAACAAATTTTGCTCCAATGTCTGTACAATCCATGTTAGAGTTATGTGAAtag
- Protein Sequence
- MSDDEMEKFEITDFDLDNEFNMNRPQRRLTKNQAIYGIWADEEGNDSDDEPSGFGGRRKKDKKYKQNYTAPVSFVAGGVQQAGKEKKEIKPEEKKNNESYNLEDNISASSDEEKPAFSFDIDQELAGLRKKRSQVNSSLINKGLGDWEKHTKGIGAKLLLGMGYQPGHGLGKKLQGILAPIEANLRKGRGAIGAYGPESKTKPMKIDSEKTADKSKDNKVLVSGWRKALKAEKTQYIYKTAEEVIEESKQPGQRKREFNELSRVKVIDMTGPEQRILSGYHAISGVKKPTDQWEIRKDKKYSNFDLPELLHNLNLLVEIAEQNIITNNQELCNSEDRLIVIEQETKRLGESINEKNKSIESLEKMIIVMESLNDALKKNMLDSSQAIKRLTEMKENYYPDYRLNGGSVLALSISQILIKEMLSTWDPLQDPTMPFEELKKWKELLTLNEPCAVGYQSSDEFQTLIWQEWVPQVQKACGQWKCRDYNSMLKLVEQSAELIPTDIITKVLENMILPQIQSEVEQWDPLTDLVPIHLWIHPWLPYLSKHFETIVYPTLRQKLSVALNAWHPSDSSAKLMLQPWINVFQQGYMEAFLIKNIVPKLQAALHAFVINPHHQQLDNWNWVNAWSDVLPLPTLVELLDQHFFPKWLKTLTMWINMNPNHEQISNWYTGWKSLMPAVIVEHPTIKGRFHSALDIMSRAVGGPSMPQPPPPPTIHGGLAEAVRTASQMPHGFKELVQKRCEERGILWMPISGRFREAKQIYRCGARLQAFIDRGVLFVSQDGTNFAPMSVQSMLELCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01037788;
- 90% Identity
- iTF_00184574;
- 80% Identity
- -