Lpau024203.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasioglossum pauxillum
Gene Symbol
-
Assembly
GCA_028455745.1
Location
CM052308.1:19952849-19957449[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.06 6.8 7.9 2.4 1 23 367 389 367 389 0.97
2 18 0.00083 0.094 13.7 0.9 2 23 427 448 426 448 0.98
3 18 0.0023 0.26 12.4 1.2 1 23 576 598 576 598 0.95
4 18 0.0028 0.31 12.1 0.4 2 23 602 623 601 623 0.96
5 18 0.00015 0.017 16.0 1.8 1 23 708 730 708 730 0.97
6 18 0.00024 0.027 15.4 0.5 1 21 736 756 736 760 0.92
7 18 0.0004 0.045 14.7 3.5 2 23 840 861 839 861 0.96
8 18 0.00035 0.039 14.9 4.4 1 23 939 961 939 961 0.96
9 18 0.00031 0.035 15.1 0.7 1 20 966 985 966 987 0.94
10 18 0.046 5.2 8.3 0.5 2 23 998 1019 998 1019 0.97
11 18 3.1e-05 0.0035 18.2 0.6 2 23 1058 1079 1057 1079 0.97
12 18 2.8e-05 0.0032 18.3 1.6 1 23 1084 1106 1084 1106 0.95
13 18 0.00016 0.018 16.0 2.9 1 23 1112 1134 1112 1134 0.98
14 18 5e-06 0.00057 20.7 0.4 1 23 1150 1172 1150 1172 0.95
15 18 4.1e-07 4.6e-05 24.1 0.6 1 23 1178 1200 1178 1200 0.99
16 18 4.4e-05 0.005 17.7 0.2 1 23 1206 1228 1206 1228 0.97
17 18 0.00016 0.019 15.9 4.1 1 23 1234 1256 1234 1256 0.96
18 18 0.012 1.3 10.1 0.4 1 20 1262 1281 1262 1283 0.89

Sequence Information

Coding Sequence
ATGGACGCCGTAGGAATAAATACGTCCGATTCGGCGCAAAATGAGGAGGAAAGCATCGTGTCGACGGTGGAAATATGTCGTGTTTGTCTTCTGGGTAATCTAGTGATGCGGGACTTGTTTCTAGAGAACGAGGTTTCTTCTCTATCGGCGAAAGCGATGAGTTTTACAAACGTTAAGATGTTACCCGGCGATGGATTGCCAACGCGGGTATGTTGCATATGCGCGGATAAACTTGAATCCGCGTACGAATTCAAGCTACAGGTGGAACAAGCTGACACGGTTCTAAGGGAGAAGTTTGTCACGATGAACATGAAGGAGGAATTATTTTTTAACGAAGTCGAAGTACACCTGGAGGTAGGAGAAAGAAACGAGGACATAGAACAGATGCACATAGAGAATCATTATCAAAACACGGTAGAAACATTGGAGACAATGTCCGGAGATGAAAAGTCATCCCTTTTGAAGGATCAGTTGGCTTTGTTGCAAGTGGGGAAGTTGGCTGAACAGGAACAGACGATAACTGAACAGCACGATAGTACGGTGATGGAAGAAGGGATCGTGTCAGAACAGATGCTGGATGAGTGTTCTAACAGAGAGGAAGATAATGGTAAGGCTGTGGACATTGTAACCAAGGACGAAATAATCCTAAAACACGAGAATATATCGACGGTAGAGCACGATTACATATTGCAACGAGACTGCATACTGGAAAACGATAGTCAACGAAAGGAAGGAACAGGGGAACAAGTGGAAGAACGAGAAGAGCAGCAGTTGATATCGGAAGAATCGTTTTCGCGCGACGATTGTGTACAGTATGTAAATATGTTGGTGAAAGCAGCTGATGTGACTCATAGAGAAGGCAGAGAAGATGAAGATCCGAGCGAAATCGAGCAGCCCGATGAAGAGGGTTCGAGAACAAATGCAAAGCTGGAAGAAGATTCTCAGTGTCAAAGCGAGACGAGAAGAAGCAAACGTAAGTTAGTTCAAAGTAGCATCAACCCTATGCGAGATTCCGACGAGGAGAATTATTTTGAAAACTTAAATCTAAGTTCGCGACTGAAGAAAGCCGAGGACTCCGATAAATCGGAAAGAATCTTTTTCATGTGTTACCTTTGCGACAAAGAGTTTTTATCGAAAAACGTTTTGCGGGAGCATATGCATTCTCACGAGGAAGTCCGAGAGGTATTGTCGTTGCGAAAATCTGTGGAAAAACCAGAGAAAGATGTCGAAAGATGCAATAATCTCACGAAATCACCTCCATCTGGTAAAAGATCAAACAAATGCCCCTACTGCGGTAAACAATATATATATATAATATCGTTCAGCAAACATTTGAAGAAGCACGAGAAAGAGAAAGAAGAGGCAAAAGAGGAGTCGTTACCGTTAGAAATTTCATTTCACGAAGACGAGCACAGTTTGGATTTCGAGGATTTTACGGATAAAGATAACATGAATTCGGAGTACCGAAAAAGAGTCAGGAAAAGAGAAGGCGTGGCTGTAACAAAATCGGAGAAAGAGGAACCAATGGTAGAGCAGACAGAGGAAGAGCAACAGGAAGAGGTGGAAGAAGCCGCAGACGAAGAAAAGGAGGAGTCCGAGGGAACCGGACATGAGGAGAAAGCGAAACGGAAAGAGAAAGAGACGAGCAGCGAGGGTAAAGAAAGGATCTGTAATCGAAACGAAAATGGGGAACGAAAGAAACGCGAAGCACACGTAGAATCGTCTTTCGCGTGTGACAAGTGTCTAGAAAAATTCTCTACTAGACGAGGTTTGCGGAAACACTCGATTTCGCATGCTGTTCTCAGATGTAGTGTGTGCGAAGAAGAGTTCGACTCGTTGGAGAAGCTGAGAAACCATCGGGCAAAACATGTCGTTGAAGGTGTATTGTCCGAACAAGATCTGGAAACGGGTACGGAGTTTCCGCTTGATAGGGATGAAGATGGCTGCCGGGTTGTCGGGGAGAAACGGAAAGAAGAAGAACAGGTACAAAGACCTCACGAAGGAAGAAGGCGAAAAGAAAAGGAGGGGGAACGAGAAGGAGAAGGAGAAGTCCAGACACAATTGTCGGAGAACGTGTTGAAGAGAAGCGCAAGAAACACGGAGATGCATTCGGAGGTCGAGTTCAGTTGTAAGGTATGCCGTCAGCGATACACGAGAATGGATTTGTTGCAAAGGCATATGGAGCAACACGAGCGTGTTAAAAATTACAAATGTACAGAATGCAATAAAACGTTCGGTAATGAACTGACTTTACGAAATCATCTTATAGCTACGAATCACAAAACTTTTGTACGAGGACAGGAGTACGATCCAAACAAACGGATTAAACGAGTGGCTGCAAGAGCAGCTCAGAAAATAATTGATAAAATTAAGACGGAAGACGGCCTGGAAGATTACGAGGACGAGGATGAACGGGAGGAGAAGATAGCCGAGCGTAAATCCACAGACGGAGATTACGGAAGGAACAAGCGTGAGATTTTGTCACCGAAGAAACACAATTGCTCGAAAAAGGAGCTGGAATGCACGACCTGTAACAAAAAGTGTAGCTCGAAACAGTCGCTAGCGAAACACATGGAACAACACGTGAAGGAGGAGAAAACTGTCAAGTTGGAGAGAGACAGGGAGAGAGAAAAAGAGAAGGATCGAGAAAGGGAGAGGGATAGAGAAAGACAAAGACAAAGGCAGGGCACCTTTGGCGACAAGAGAGAACGACAGAGGAGCTGCGCGAACGACGCGGTTGAATCAAGCGAGGTCAACAAGGACGATGACTACGATTCAGATTTCGAAAGCGGGTTGGATTGGCCGATGGACAATCACGAATGCGTAAAGTGCAAGAAACGATACAGCACGAAGAAATCGTTGCTGCGCCATCAACTTTTGCACGAGGAACCGAACTTCGAATGCGACATTTGCAACGTGAAATTCTATCGTAAAGACAAGTTGAAAGCTCACTACGACAAGTGCTCGGAAAAGAACCCTGACCAGGTGAGAAAATGCAACATCTGCGGGGACAGTTTCGAAAATAATGAGATATTGCGAGAGCATAGATCGAAACACGTGACAGAAGGCATTCTCACCGAGGAGGATCTGAGGGATATCGAGCCGCGGCCAGAAGAGAAGAAGCCAGGAGAGAAGATCGGTAGGAAAAGAAGGACCGATATAGTGGGATTGGAGTGTACCGAATGCAACAAACAGTACACCTCTAGGAAAGGGCTACTGCGTCACATTCAGGTCCACGAAGGGAAGAAGTACCTTTGCGACATATGCCCGAAAAAGTTCTACAGAAGAGAACATTTGAAGATACACGTGGCCAAGCACAACATGATCAAACCGTACAAGTGTACGCGCTGTACGAAACGTTTCATCAAAGAAGAACAACTGACCAATCATTTGTCGAAACACGATCGAACATTTAAGAAGAACAAAGAAACTGATAGCTCGAAAAGATTTCTTTGCGAGATTTGCTCGAAAAGTTTCACCCAATCGACGACGTTGATCGCGCATCTCAGGGCTCACAACGGCATTAAACCGTACGTTTGCGAAGTCTGTTCTCGACCGTTCACTACAAACGCCTATCTAAAGATGCACATGCGAACGCACACCCAAGAACGGCCGTACATTTGTCAGTACTGTTCGCGTGCTTTCGCTAGAGCCGACACGCTCGCCAATCATTTGACATCGCACACCGGCGAGGCTAAGTATCACTGCAAGTACTGTCCGAAAAACTTCCGTCGCCTGAAATCCCTGAAGGAGCACGTTTTCATTCACACGGGTCAAAGGCCGTACGCTTGCCCGACTTGCGATCGCCGTTTCAATAACAACGGAAGTCGCTACGCCCATAGTAAGAGATGTAAACAAAATTTTGTTCAAAATCAGAATCGTGGCCAAACGTTGACGCAAGTACAATCTTCCCAGAATCAGCAAAGAATATTGCATCAGCAAACCACTCTTGGACAGACGCAACTATTGAAAGCGCAGAACATTAAAACTATTACGATCACTAGACAACCAGATGCCGTTGCTACTCAACACGTCGGGCAGCATCAAGAAATAATAATGCCTCTGATCTTTCCTTTAACCGTCACAGTCGCCGATATCAGCGAAGAAGTTATATTACCGGAAGGAACCAAATTGTTTACGACCACTTAA
Protein Sequence
MDAVGINTSDSAQNEEESIVSTVEICRVCLLGNLVMRDLFLENEVSSLSAKAMSFTNVKMLPGDGLPTRVCCICADKLESAYEFKLQVEQADTVLREKFVTMNMKEELFFNEVEVHLEVGERNEDIEQMHIENHYQNTVETLETMSGDEKSSLLKDQLALLQVGKLAEQEQTITEQHDSTVMEEGIVSEQMLDECSNREEDNGKAVDIVTKDEIILKHENISTVEHDYILQRDCILENDSQRKEGTGEQVEEREEQQLISEESFSRDDCVQYVNMLVKAADVTHREGREDEDPSEIEQPDEEGSRTNAKLEEDSQCQSETRRSKRKLVQSSINPMRDSDEENYFENLNLSSRLKKAEDSDKSERIFFMCYLCDKEFLSKNVLREHMHSHEEVREVLSLRKSVEKPEKDVERCNNLTKSPPSGKRSNKCPYCGKQYIYIISFSKHLKKHEKEKEEAKEESLPLEISFHEDEHSLDFEDFTDKDNMNSEYRKRVRKREGVAVTKSEKEEPMVEQTEEEQQEEVEEAADEEKEESEGTGHEEKAKRKEKETSSEGKERICNRNENGERKKREAHVESSFACDKCLEKFSTRRGLRKHSISHAVLRCSVCEEEFDSLEKLRNHRAKHVVEGVLSEQDLETGTEFPLDRDEDGCRVVGEKRKEEEQVQRPHEGRRRKEKEGEREGEGEVQTQLSENVLKRSARNTEMHSEVEFSCKVCRQRYTRMDLLQRHMEQHERVKNYKCTECNKTFGNELTLRNHLIATNHKTFVRGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYEDEDEREEKIAERKSTDGDYGRNKREILSPKKHNCSKKELECTTCNKKCSSKQSLAKHMEQHVKEEKTVKLERDREREKEKDRERERDRERQRQRQGTFGDKRERQRSCANDAVESSEVNKDDDYDSDFESGLDWPMDNHECVKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFVQNQNRGQTLTQVQSSQNQQRILHQQTTLGQTQLLKAQNIKTITITRQPDAVATQHVGQHQEIIMPLIFPLTVTVADISEEVILPEGTKLFTTT