Lvie006190.1
Basic Information
- Insect
- Lasioglossum vierecki
- Gene Symbol
- -
- Assembly
- GCA_028455595.1
- Location
- CM052343.1:1696387-1700937[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.065 5.4 7.9 2.4 1 23 362 384 362 384 0.97 2 18 0.00089 0.075 13.7 0.9 2 23 422 443 421 443 0.98 3 18 0.0017 0.14 12.9 0.9 1 23 574 596 574 596 0.96 4 18 0.00052 0.044 14.5 0.7 2 23 600 621 599 621 0.96 5 18 0.00012 0.01 16.5 2.8 1 23 708 730 708 730 0.97 6 18 0.00025 0.021 15.4 0.5 1 21 736 756 736 760 0.92 7 18 0.00097 0.081 13.6 4.4 2 23 840 861 839 861 0.96 8 18 0.00037 0.031 14.9 4.4 1 23 938 960 938 960 0.96 9 18 0.00025 0.021 15.5 0.9 1 20 965 984 965 986 0.94 10 18 0.049 4.1 8.3 0.5 2 23 997 1018 997 1018 0.97 11 18 3.3e-05 0.0028 18.2 0.6 2 23 1057 1078 1056 1078 0.97 12 18 3e-05 0.0025 18.3 1.6 1 23 1083 1105 1083 1105 0.95 13 18 0.00024 0.02 15.5 3.1 1 23 1111 1133 1111 1133 0.98 14 18 5.4e-06 0.00045 20.7 0.4 1 23 1149 1171 1149 1171 0.95 15 18 4.4e-07 3.7e-05 24.1 0.6 1 23 1177 1199 1177 1199 0.99 16 18 4.8e-05 0.004 17.7 0.2 1 23 1205 1227 1205 1227 0.97 17 18 0.00018 0.015 15.9 4.1 1 23 1233 1255 1233 1255 0.96 18 18 0.012 1 10.1 0.4 1 20 1261 1280 1261 1282 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGGAATAAATACGTCCGATTCGGCGCAAAGTGAAGAGGAAAGCATCGTGTCGACGGACGAAATATGTCGTGTTTGTCTTCTGGGTAATCTAGTGATGCGGGACTTGTTTCTAGAGAACGAGGTTTCTTCCCTGTCGGCGAAAGCGATGAGTTTTACAAACGTTAAGATGTTACCCGGCGATGGATTGCCAACGCGAGTATGTTGTTTGTGCGCGGATAAACTTGAATCCGCGTACGAATTCAAGTTACAGGTGGAACAGGCAGACACGGTTCTCAGAGAGAAGTTTGTCACGATGAACATGAAGGAGGAATTATTTTTTAACGAAGTCGAAGTGGACCTGGATGCAGGAGAGAGAAACGAGGACATAGAACGGATGCGCATAGAGAATTATCAGAGCACGGTAGAATCGTTGGAGGCAATGTCCGGAGATGAAAAGTCGTCCCTCTTGAAGGATCGGTTGGCTCTGTTGCAAGTGAGGAAGTTGGCCGAACAGGAACAGACGATAACCGAACAGCACGATAGTACAGTGATGGAAGAAGGGATCGTGTCGGAACAGATGTTGGACGAGTGTTCCAACAGAGAGGAAGATAACGGCAAGGCTGTGGACATTATAACCAAGGACGAAGTGATCCTGAAACACGAGAATATATCGACGGTAGAGCACGATTACATATTGCAACGAGACTGCATACTGGAAAACGATAGTTCGCGGAAAGAAGGAACAGGGGAACAAGAGGAAGAACGGGAAGAGCAGCAGATGATAACGGAAGAGTCGTTTTCGCGCGAAGATTGCGTACAGTATGTAAATATGTTGGTGAAAGCAGCTGACGTGACTCGCGGAGAAGACGAAGGTCCGATGGAAGTCGAGCAGCCCGATGAAAAGGATTCGAGAACAGATGCAAAGCTGGAAGAAGAGACTCAGTGTCAAAGCGAGACGAGAAGAAGCAAACGTAAGCTACAAAGTAGCCCCGACACCACGCGAGATTCCGACGAGGAGAATTATTTCGAAAACTTAAATCTAAGTTCGCGACTGAAGAAAGCCGAGGACTCCGATAAGTCGGACAGAATCTTTTTCATGTGTTACCTTTGCGACAAGGAGTTTCTATCGAAAAACGTTTTGCGGGAGCATATGCATTCTCACGAGGAAGTCCGAGAGGTTTTGTCGTTGCGAAAATCCGTGGAGAAGCCGGAGAAAGACGTCGAGAGATGCAATAGTCTCGCGAAAACACCTCCATCTGGTAAAAGATCGAACAAATGCCCGTACTGCGGTAAACAATATATATACATAATATCGTTCAGCAAACATTTGAAGAAGCACGAGAAAGAGAAAGAAGAGGCGAAAGAGGAGTCGCTTCCGTTAGAAATTTCATTTCACGAAGACGAGCACAGTTTGGATTTCGAGGACTTTGCGGACAAAGATAACATGAATTCGGAGTACCGAAAAAAAGTCAGGAAAAGAGAAAGCGTGGCTGTAACAAAATCGGATAAAGAGGAACCAATGACAGAGCAGATGGAGGAGAAGCAAGAGGAAGGGGAGGAAGAAGAACCCGTAAATGAAGAAAAAGAGGAGACCGAGGGAACCGGATGCGAAGAGAATGCAAAACGGAAAGAGAAAGAAACAAGCAGCGAAGGTAAAGAAAGAACCTCCAATCGAAATGAAAATGGGGAACGAAAGAAACAAGAAACACGCGTGGATTCGGATTCGGATTTCGCGTGCAACAAGTGTCTAGTAAAATTCCCTACTAGACGAAGTTTGCGAAAACACTTGATTTTGCATACTACTCTTAAATGTAGCGTGTGCGAAAAAGAATTCGACTCGTTGGAGAAGCTGAGAAACCATCGGGCAAAGCATGTCGTTGAAGGTGTGTTGTCTGAACAAGATGTGGAAATGGGTATGGAGTTTACGATTGACAAGGAAGAGGACGGCTGTAGGGTTGTAGGGGACAAAGGGAAAGCAGAAGAACAGGTACAAGAACCTAACGAAGGAAGAAGACGGAAAGACAAGGAGGGGGAACGAGTACGGGAACGAGAAGGTGAACCCCAGACACAATCGTCGGAGAATGTGTTGAAGAGAAGCGCAAGAAAAACGGAGATGAATTCGGTGGTCGAGTTCAGTTGCAAGGTATGCCATCAGCGATACACGAGAATAGATTTGTTGCAGAGGCATATGGAGCAACACGAACGTGTTAAAAATTACAAATGTACAGAATGCAATAAAACGTTCGGTAATGAACTGACTTTACGAAATCATCTCATAGCTACGAATCACAAAACTTTTGTCAGAGGACAGGAGTACGATCCAAACAAACGGATCAAACGAGTAGCTGCGAGAGCAGCTCAGAAAATAATTGATAAAATTAAGACGGAAGACGGCCTGGAAGATTACGAGGACGAGGATGAACGGGAGGAGATGATAGCCGAGCGGAACTTCACGGACGGAAATTACGGACGGAACAAGCGTGAGATGTTATTACCGAAGAAACACAATTTCTCGAAAAAGGAGCTGGAATGCACGAGTTGTAACAAAAAGTGTAGCTCGAAACAGTCGCTAACGAAACACATGGAGCAACACGTGAAGGAGGAGAAAACTGTCAAGGTGGATAAAGAGAGGGACAGAGAGAAGGAGAAGGACCGAGACAGAGAGAGGGACAGAGAAAGGCAAAGGCAGAGCACCTTCGGGGACAAGAGAGAACGACAGAGGAGCTGCGCGAACAACGACGCGGTTGATTCGAGCGACGTCAACAAGGAGGATGACTACGATTCAGATTTCGAAAGCGGGTTGGATTGGCCGATGGACAATCACGAATGCGTCAAGTGCAAGAAACGATACAGCACGAAGAAATCGTTGCTGCGCCATCAACTTTTGCACGAGGAGCCGAACTTCGAGTGCGACATTTGCAACTTGAAATTCTATCGTAAAGACAAGTTGAAAGCTCACTACGACAAGTGCTCGGAGAAGAACCCCGACCAGGTGAGAAAATGCAACATCTGCGGGGACAGTTTCGAGAATAACGAGATACTGCGAGAGCATAGATCGAAACACGTGACAGAAGGGATTCTCACCGAGGAGGACCTGAGGGACATCGAGCCGCGGCCAGAAGAGAAGAAGCCGGGAGAGAAGATCGGTAGGAAAAGAAGGACCGATATAGTCGGATTGGAGTGCACCGAATGCAACAAACAGTACACCTCTAGGAAAGGGCTGCTGCGTCACATTCAGGTTCACGAAGGGAAGAAGTACCTTTGCGACATATGCCCGAAGAAGTTCTACAGAAGAGAACATTTGAAGATTCACGTGGCCAAGCACAACATGATCAAACCGTACAAGTGTACGCGCTGTACGAAACGTTTCATCAAAGAAGAACAACTGACCACTCATTTGTCGAAGCACGACCGAACATTTAAGAAGAACAAAGAAACCGATAGCGCCAAAAGATTTCTCTGCGAGATTTGCTCGAAGAGTTTCACCCAATCGACGACGTTGATCGCGCATCTTAGGGCTCACAACGGCATTaaaccgtacgtttgcgaggtctgttctcgaccgttcactacaaacgcctatctgaagatgcacatgagaacgcatacccaagaacggccgtacatatgtcagtattgttcgcgcgctttcgccagggccgacacgctcgccaatcacttgacatcgcacaccggcgaggctaagtatcactgcaagtattgtccgaagaacttccgtcgcctgaaatccctgaaggagcacgtcttcattcacacgggtcaacgaccatacgcttgcccgacttgcGACCGCCGTTTCAACAACAACGGAAGTCGCTACGCCCACAGCAAGAGATGCAAGCAAAACTTCATTCAAAATCAGAATCGTGCCCAAGCGTTGGCGCAAGTACAAGTTTCCCAGAACCAGCAAAGAATATTGCATCAGCAGAGCACTCTCGCACAGACGCAACTGTTGAAAGCGCAGAACATTAAAACTATTACGATCACTAGACAACCCGACGTCGTTGTTCCTCAACACGTCGCGCAGCATCAAGAAATAATAATGCCCCTGATCTTTCCTTTAACCGTCACAGTCGCCGATATCAGCGAAGAAGTTATATTACCGGAAGGAACCAAATTGTTTACGACCACTTAA
- Protein Sequence
- MDAVGINTSDSAQSEEESIVSTDEICRVCLLGNLVMRDLFLENEVSSLSAKAMSFTNVKMLPGDGLPTRVCCLCADKLESAYEFKLQVEQADTVLREKFVTMNMKEELFFNEVEVDLDAGERNEDIERMRIENYQSTVESLEAMSGDEKSSLLKDRLALLQVRKLAEQEQTITEQHDSTVMEEGIVSEQMLDECSNREEDNGKAVDIITKDEVILKHENISTVEHDYILQRDCILENDSSRKEGTGEQEEEREEQQMITEESFSREDCVQYVNMLVKAADVTRGEDEGPMEVEQPDEKDSRTDAKLEEETQCQSETRRSKRKLQSSPDTTRDSDEENYFENLNLSSRLKKAEDSDKSDRIFFMCYLCDKEFLSKNVLREHMHSHEEVREVLSLRKSVEKPEKDVERCNSLAKTPPSGKRSNKCPYCGKQYIYIISFSKHLKKHEKEKEEAKEESLPLEISFHEDEHSLDFEDFADKDNMNSEYRKKVRKRESVAVTKSDKEEPMTEQMEEKQEEGEEEEPVNEEKEETEGTGCEENAKRKEKETSSEGKERTSNRNENGERKKQETRVDSDSDFACNKCLVKFPTRRSLRKHLILHTTLKCSVCEKEFDSLEKLRNHRAKHVVEGVLSEQDVEMGMEFTIDKEEDGCRVVGDKGKAEEQVQEPNEGRRRKDKEGERVREREGEPQTQSSENVLKRSARKTEMNSVVEFSCKVCHQRYTRIDLLQRHMEQHERVKNYKCTECNKTFGNELTLRNHLIATNHKTFVRGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYEDEDEREEMIAERNFTDGNYGRNKREMLLPKKHNFSKKELECTSCNKKCSSKQSLTKHMEQHVKEEKTVKVDKERDREKEKDRDRERDRERQRQSTFGDKRERQRSCANNDAVDSSDVNKEDDYDSDFESGLDWPMDNHECVKCKKRYSTKKSLLRHQLLHEEPNFECDICNLKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTTHLSKHDRTFKKNKETDSAKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFIQNQNRAQALAQVQVSQNQQRILHQQSTLAQTQLLKAQNIKTITITRQPDVVVPQHVAQHQEIIMPLIFPLTVTVADISEEVILPEGTKLFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00865472;
- 90% Identity
- iTF_00865472;
- 80% Identity
- -