Basic Information

Insect: Halictus quadricinctus
Gene Symbol: -
Assembly: GCA_028454245.1
Location: CM052111.1:1409042-1413740[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.063 5.1 7.8 2.4 1 23 374 396 374 396 0.97

2 18 0.00087 0.071 13.7 0.9 2 23 433 454 432 454 0.98

3 18 0.0017 0.14 12.7 0.9 1 23 580 602 580 602 0.95

4 18 0.0029 0.23 12.1 0.4 2 23 606 627 605 627 0.96

5 18 0.00024 0.02 15.5 1.8 1 23 722 744 722 744 0.97

6 18 0.00033 0.027 15.0 0.5 1 21 750 770 750 774 0.92

7 18 0.00014 0.011 16.2 2.7 2 23 854 875 853 875 0.96

8 18 0.00036 0.029 14.9 4.4 1 23 961 983 961 983 0.96

9 18 0.00032 0.026 15.1 0.7 1 20 988 1007 988 1009 0.94

10 18 0.046 3.7 8.3 0.5 2 23 1020 1041 1020 1041 0.97

11 18 3.3e-05 0.0026 18.2 0.6 2 23 1080 1101 1079 1101 0.97

12 18 3e-05 0.0024 18.3 1.6 1 23 1106 1128 1106 1128 0.95

13 18 0.00017 0.014 16.0 2.9 1 23 1134 1156 1134 1156 0.98

14 18 5.3e-06 0.00043 20.7 0.4 1 23 1172 1194 1172 1194 0.95

15 18 4.3e-07 3.5e-05 24.1 0.6 1 23 1200 1222 1200 1222 0.99

16 18 4.6e-05 0.0038 17.7 0.2 1 23 1228 1250 1228 1250 0.97

17 18 0.00017 0.014 15.9 4.1 1 23 1256 1278 1256 1278 0.96

18 18 0.012 0.98 10.1 0.4 1 20 1284 1303 1284 1305 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.063	5.1	7.8	2.4	1	23	374	396	374	396	0.97
2	18	0.00087	0.071	13.7	0.9	2	23	433	454	432	454	0.98
3	18	0.0017	0.14	12.7	0.9	1	23	580	602	580	602	0.95
4	18	0.0029	0.23	12.1	0.4	2	23	606	627	605	627	0.96
5	18	0.00024	0.02	15.5	1.8	1	23	722	744	722	744	0.97
6	18	0.00033	0.027	15.0	0.5	1	21	750	770	750	774	0.92
7	18	0.00014	0.011	16.2	2.7	2	23	854	875	853	875	0.96
8	18	0.00036	0.029	14.9	4.4	1	23	961	983	961	983	0.96
9	18	0.00032	0.026	15.1	0.7	1	20	988	1007	988	1009	0.94
10	18	0.046	3.7	8.3	0.5	2	23	1020	1041	1020	1041	0.97
11	18	3.3e-05	0.0026	18.2	0.6	2	23	1080	1101	1079	1101	0.97
12	18	3e-05	0.0024	18.3	1.6	1	23	1106	1128	1106	1128	0.95
13	18	0.00017	0.014	16.0	2.9	1	23	1134	1156	1134	1156	0.98
14	18	5.3e-06	0.00043	20.7	0.4	1	23	1172	1194	1172	1194	0.95
15	18	4.3e-07	3.5e-05	24.1	0.6	1	23	1200	1222	1200	1222	0.99
16	18	4.6e-05	0.0038	17.7	0.2	1	23	1228	1250	1228	1250	0.97
17	18	0.00017	0.014	15.9	4.1	1	23	1256	1278	1256	1278	0.96
18	18	0.012	0.98	10.1	0.4	1	20	1284	1303	1284	1305	0.89

Sequence Information

Coding Sequence: ATGGACGCGGTGGAAATAAATACGTCCGATTCGGCGCAAAATGAGGAGGAAAGCATCGTGTCGACAGTGGAAATATGTCGTGTTTGTCTTCTGGGTAATCTAGTGATGCGGGACTTGTTTCTAGAGAATGAGGTTTCTTCTCTATCGACGAAAGCGATGAGTTTTACAAACGTTAAGATGTTACCCGGCGATGGATTGCCAACGCGCGTATGTTGCATGTGCGCGGATAAACTCGAATCCGCGTACGAATTCAAGCTACAGGTGGAACAAGCCGACACGGTTCTAAGGGAAAAGTTTGTTACCATGAATATGAAGGAAGAATTATTTTTTAACGAAGTCGAAGTACACCTGGAGGTAGGAGAAAGAAACGAGGATATAGAACGGATCCACATAGAGAATCATTATCAAAACGCGGTAGAAACGTTGGAGACAATGTCTGGAGAAGAAAAGTCGTCCCTTCTGAAGGATCAGTTGGCTTTGTTGCAAGTGGGAAAGTTGGCTGATCAGGAACAGACGATAACCGAACAGCACGATAGTTCGGTGATGGAAGAAGCGATCGTGTCGGAACCGATATTGGACGAGTGTTCCAACAGAGAGGAAGAAAACGATAAGGCTGTGGACATTATGACCAAGAACGAAATAATCTTGAAACACGAAACCGCTGAAAATTGTATCGAGAATATTTCAACGGTAGAACACGATTACATATTGCATCAAGAATGCATACTGACAAACGATAATCAAGAAAAAGAAGGAACAGGGGAACAAGAGGAAGAGCAAGAAGAGCAGCAGTTGATATCGGAAGAATCGTTTTCGCGCGACGATTGCGTACAGTATGTAAACATGTTGGTGAAAGCGGCCGACGTGACTCGCAAAGAAGACGGAGAAGAGGAAAATCCGAGCGAAATCGAGCAACCCGATGAAGAGGGTTCGAGAACAAATGCAAAGGCGGAACAAGATTCTCAGTGTCAAAGCGAGACGAGAAGAAGCAAACGCAAGCTAGTCCGAAGAAACTCCGACCCCGTGCGAGATTCCGACGAGGAGAATTATTTTGAAAACTTGAATCTCAGTTCGCGACTGAAGAAAGCCGAGGACTCTGACAAATTCGAAAGAATCTTTTTCATGTGTTACCTTTGCGACAAAGAGTTTTTATCGAAAAACGTTTTGCGGGAGCATATGCATTCTCACGAGGAAGTCCGAAAGGTATTGTCGTTGCGAAAATCCGTGGAAAAGCCAGAGAAGGACGTCGAAAGATGCAATCTCACGAAATTGCCTCCATCTGGTAAAAGATCGAATAAATGCCCGTACTGCGGTAAACAATATATATACATAATATCGTTCAGCAAACATTTGAAGAAGCACGAGAAAGAGAAAGAAGAGGCGAAAGAGGAATCGTTGCCGTTGGAAATTTCGTTTCACGAAGACGAGCACAGTTTGGACTTTGAGGATTTTGCGGATAAAGATAACTTGAATTCCGAGTACAGAAAAAGAGTCAGGAGAAGAGAAGGTGCGGCGGCTGCAGCAAAATCGGAGAAAGAGGAAAGAATGGTAGAGCAGCAGATAGAGGAAAAGGAGGAAGAAGCCGTAGACGAAGAAAACCTGCAGTCCGAGGGAATCGGATGCGACGACAAAGCGAAACGGAGAGAGAAAGAGACGAGCAGCGAAGGTAAAGAAAGGATCTGTAATCGAAACGAAAATGGGGAACGAAAGAAACGCGAAGCGCGCGTAGAATTGTCGTTCGCGTGCGACCAGTGTCTAGAAAAATTCTCTACTAGACGAGGTTTGCGGAAACACACGATTTTGCATGCTGCTCTCAGATGTAGCGTGTGCGAAGAAGAGTTCGACTCGTTGGAGAAGCTGAGAAACCATCGTGCAAAGCATGTCGTTGAAGGTGTATTGTCCGAACAAGATCTGGAAACGGGTACAGAGTTTTCGATTGACAGGGACGAGGACGGCTGTCGGGTTAGCGTCGACAAACTGAAAGGAGAGGAACAAGGAAATCACGAAGGAAGAAGGCGGAAAGAAACGGAGGGGGAACGAGAACCAGAACGAGAACGTGAACGTGAATGTGAACGTGAACGAGAACGAGAACCCCAGGCACAATTATCGGAGAACGCGTTCAAGAGAAACGCAAGAAACACGGAGGTGCAGTCGGAGGTCGAGTTCAGTTGTAAGGTATGCTATCAACGATACACGAGAATGGATTTGTTGCAGAGGCATATGGAGCAACACGAGCGTGTGAAAAATTACAAATGTACAGAATGCAATAAAACGTTCGGTAGTGAACTGACTTTACGAAATCATCTTATAGCTACGAATCACAAAACTTTTGTTCGAGGACAGGAGTACGATCCAAACAAACGGATCAAACGAGTGGCTGCGAGAGCAGCTCAGAAAATAATTGATAAAATCAAGACGGAAGACGGCCTGGAAGATTTCGAGGACGAGGATGAACGGGAGGAGAAGATAGTCGAGCGGAACTCCACGGAGGGAAATTACGGACGGAACAAGCGTGACATTTTCTCACCGAAGAAACACAATTGCTCGAAAAAGGAGCTGGAATGCACAGGCTGCAACAAAAAGTGTAGCTCGAAACAATCGCTGGCGAAGCACATGGAACAACACGTGAAGGAGGAGAAAactgtcaagttggagagagaaagggagagggagagggagagggagaaggagagagagagagaaagggagcgagagaaggagagggataaagagaggcaaagacaaaaaCAGGGCAGCTGCGGGGACAAGAGAGAACGACAGAGGAGCTGCACGAACGATGCGGTTGAATCGAGCGAGCTCAACAAGGACGACGACTACGATTCGGATTTTGAAAGCGGGTTGGATTGGCCGATGGACAATCACGAATGCGTAAAGTGCAAAAAACGATACAGCACGAAGAAATCGTTGCTGCGCCATCAACTTTTGCACGAAGAACCAAACTTCGAATGCGACATTTGCAACGTGAAATTCTATCGTAAGGACAAGTTGAAAGCTCACTACGACAAATGCTCGGAAAAGAACCCTGACCAAGTGAGAAAGTGCAATATCTGCGGGGACAGTTTCGAAAATAACGAGATATTGCGAGAGCATAGATCGAGACACGTGACAGAAGGCATTCTGACCGAGGAGGACCTGAGGGATATCGAGCCGCGGCCTGAAGAGAAGAAGCCAGGAGAGAAGATCGGTAGAAAAAGAAGGACCGATATAGTGGGATTGGAGTGTACCGAATGCAACAAACAGTACACCTCTAGGAAAGGGCTACTGCGTCACATTCAGGTTCACGAAGGGAAAAAGTACCTTTGCGACATATGTCCGAAAAAGTTCTACAGAAGAGAACATTTGAAGATCCACGTGGCCAAGCACAACATGATCAAACCGTACAAGTGTACGCGCTGTACGAAACGTTTCATCAAAGAAGAACAACTGACCAATCATTTGTCGAAGCACGACCGAACTTTTAAGAAGAACAAAGAAACTGACAGCTCCAAGAGATTTCTTTGCGAGATTTGCTCGAAAAGTTTCACTCAATCGACGACGTTGATCGCGCATCTCAGGGCTCACAACGGCATTAAACCGTACGTTTGCGAGGTCTGTTCTCGACCGTTCACTACAAACGCCTATCTAAAGATGCACATGAGGACGCACACCCAAGAACGGCCGTACATTTGTCAGTACTGTTCGCGCGCTTTCGCCAGAGCTGACACGCTCGCGAATCACTTGACGTCGCACACCGGCGAGGCCAAGTATCATTGCAAGTATTGCCCGAAAAACTTCCGCCGCCTGAAATCCCTGAAGGAGCACGTTTTCATTCACACGGGTCAGAGACCGTACGCTTGCCCGACTTGCGACCGCCGTTTCAACAACAACGGAAGTCGCTACGCCCATAGCAAGAGATGCAAACAAAATTTTGCTCAGAATCAGAATCGTGGTCAAACGTTGACGACGCAAGTACAATCTACCCAAAATCAGCAAAGAGTATTGCATCAGCAAACCGCTCTTGGACAGACGCAACTGCTGAAAGCGCAGAACATTAAAACTATCACGATCACTAGACAACCGGATGTCGTTGCTGCCCAACACGTCGCGCAGCATCAAGAAATAATAATGCCCCTGATCTTTCCTTTAACCGTCACAGTCGCCGATATCAGCGAAGAAGTTATATTACCAGAAGTAACCAAATTGTTTACGACCACTTAA
Protein Sequence: MDAVEINTSDSAQNEEESIVSTVEICRVCLLGNLVMRDLFLENEVSSLSTKAMSFTNVKMLPGDGLPTRVCCMCADKLESAYEFKLQVEQADTVLREKFVTMNMKEELFFNEVEVHLEVGERNEDIERIHIENHYQNAVETLETMSGEEKSSLLKDQLALLQVGKLADQEQTITEQHDSSVMEEAIVSEPILDECSNREEENDKAVDIMTKNEIILKHETAENCIENISTVEHDYILHQECILTNDNQEKEGTGEQEEEQEEQQLISEESFSRDDCVQYVNMLVKAADVTRKEDGEEENPSEIEQPDEEGSRTNAKAEQDSQCQSETRRSKRKLVRRNSDPVRDSDEENYFENLNLSSRLKKAEDSDKFERIFFMCYLCDKEFLSKNVLREHMHSHEEVRKVLSLRKSVEKPEKDVERCNLTKLPPSGKRSNKCPYCGKQYIYIISFSKHLKKHEKEKEEAKEESLPLEISFHEDEHSLDFEDFADKDNLNSEYRKRVRRREGAAAAAKSEKEERMVEQQIEEKEEEAVDEENLQSEGIGCDDKAKRREKETSSEGKERICNRNENGERKKREARVELSFACDQCLEKFSTRRGLRKHTILHAALRCSVCEEEFDSLEKLRNHRAKHVVEGVLSEQDLETGTEFSIDRDEDGCRVSVDKLKGEEQGNHEGRRRKETEGEREPERERERECEREREREPQAQLSENAFKRNARNTEVQSEVEFSCKVCYQRYTRMDLLQRHMEQHERVKNYKCTECNKTFGSELTLRNHLIATNHKTFVRGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFEDEDEREEKIVERNSTEGNYGRNKRDIFSPKKHNCSKKELECTGCNKKCSSKQSLAKHMEQHVKEEKTVKLEREREREREREKEREREREREKERDKERQRQKQGSCGDKRERQRSCTNDAVESSELNKDDDYDSDFESGLDWPMDNHECVKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSRHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFAQNQNRGQTLTTQVQSTQNQQRVLHQQTALGQTQLLKAQNIKTITITRQPDVVAAQHVAQHQEIIMPLIFPLTVTVADISEEVILPEVTKLFTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00865472;
90% Identity: iTF_00763373;
80% Identity: -