Lcal012450.1
Basic Information
- Insect
- Lasioglossum calceatum
- Gene Symbol
- -
- Assembly
- GCA_963966675.1
- Location
- OZ016544.1:695413-700018[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.066 7.2 7.9 2.4 1 23 367 389 367 389 0.97 2 18 0.00073 0.08 14.0 0.6 2 23 427 448 426 448 0.98 3 18 0.0025 0.27 12.4 1.2 1 23 575 597 575 597 0.95 4 18 0.003 0.33 12.1 0.4 2 23 601 622 600 622 0.96 5 18 0.00013 0.014 16.4 3.3 1 23 707 729 707 729 0.97 6 18 0.00026 0.028 15.5 0.5 1 21 735 755 735 759 0.92 7 18 0.0019 0.21 12.7 3.5 2 23 836 857 835 857 0.96 8 18 0.00038 0.041 14.9 4.4 1 23 936 958 936 958 0.96 9 18 0.00034 0.037 15.1 0.7 1 20 963 982 963 984 0.94 10 18 0.05 5.5 8.3 0.5 2 23 995 1016 995 1016 0.97 11 18 3.4e-05 0.0037 18.2 0.6 2 23 1055 1076 1054 1076 0.97 12 18 3.1e-05 0.0034 18.3 1.6 1 23 1081 1103 1081 1103 0.95 13 18 0.00017 0.019 16.0 2.9 1 23 1109 1131 1109 1131 0.98 14 18 5.5e-06 0.0006 20.7 0.4 1 23 1147 1169 1147 1169 0.95 15 18 4.5e-07 4.9e-05 24.1 0.6 1 23 1175 1197 1175 1197 0.99 16 18 4.9e-05 0.0053 17.7 0.2 1 23 1203 1225 1203 1225 0.97 17 18 0.00018 0.02 15.9 4.1 1 23 1231 1253 1231 1253 0.96 18 18 0.013 1.4 10.1 0.4 1 20 1259 1278 1259 1280 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGGAATAAATACGTCCGATTCGGCGCAAAATGAGGAGGAAAGCATCGTGTCGACGGTGGAAATATGTCGTGTTTGTCTTCTGGGTAATCTAGTGATGCGGGACTTGTTTCTAGAGAACGAGGTTTCTTCTCTATCGGCGAAAGCGATGAGTTTTACAAACGTTAAGATGCTACCCGGCGATGGATTGCCAACGCGAGTATGTTGCGTATGCGCGGATAAACTTGAATCCGCGTACGAATTCAAGCTACAGGTGGAACAAGCTGACACGGTTCTAAGAGAGAAGTTTGTCACGATGAACATGAAggaggaattattttttaacgaagTTGAAGTACACCTGGAGGTAGGAGAAAGAAACGAGGACATAGAACGGATGCATATAGAGAATCATTACGAAAACACGGTAGAAACATTGGAGACAATGTCCGGAGATGAAAAGTCATCCCTTTTGAAGGATCAGTTGGCTTTGTTGCAAGTGGGGAAGTTGGCTGAACAGGAACAAACGATAACCGAACAGCACGATAGTACGGTGATGGAAGAAGGGATCGTGTCGGAACAGATGTTGGATGAGTGTTCCAACAGAGAGGAAGATAACGGTAAGACTGTGGACATTATAACCAAGGACGAAATAATCCTGAAACACGAGAATATATCGACGGCAGAGCACGATTACATATTGCATCCAGACTGCATACTGCAAAACAATAGTCAACGAAAAGAAGGAACAggggaacaagaagaagaacgaGAAGAGCAGCAGTTGATATCGGAAGAATCGTTTTCGCGCGACGATTGCGTACAGTAtgtaaatatgttggtgaaagcaGCTGACGTGACTCGTAAAGAAGACGGAGGAGACGTAGATCCGAGCGAAATCGAGCAGCCCGATAAAGAGGGTTCGAAAACAAATGCAAAGCTGGAAGCAGATTCTCAGTGTCAAAGCGAGACGAGAAGAAGCAAACGTAAGCTAGTTCAAAGTAGCATGCACTCCATGCGAGATTCCGACGAggagaattattttgaaaacttAAATCTAAGTTCGCGATTGAAGAAAGCCGAGGACTCCGATAAATCggaaagaatatttttcatGTGTTACCTTTGCGACAAAGAGTTTTTATCGAAAAACGTTTTACGGGAGCATATGCATTCCCACGAGGAAGTCCGAGAGGTATTGTCGTTGCGAAAATCCGTGGAAAAGCCAGAGAAAGATGTCGAAAGATGCAATAATCTCACGAAATTACCTCCATCTGGTAAAAGATCGAACAAATGCCCCTACTGCGGTaaacaatatatatacataatatcgTTCAGCAAACATTTGAAGATgcacgagaaagagaaagaagaggcAAAAGAGGAATCGTTGCCGTTAGAAATATCGTTTCACGAAGATGAGCACAGTTTGGATTTCGAGGATTTTATGGATAAAGATAACATGAATTCTGAGTACCGAAAAAGAGTCAGGAAAAGAGAAGGTGTGGCTGTAACAAAATCGGAGAAAGAGGAACCAATGGTAGAGCAGACGGAGGAAGAGCAACAGGCAGAGGAGGAAGAAGCCGTAGACGCAGAAAAGGAGTCCGAGGGTACCGGACGCGAGGAGAAAGCGAAACGGAAAGAAAAAGAGACAAGCAGCGAGGGTAAAGAAAGGATCTGTAATCGAAACGAAAATGGGGAGCGAAAGAAACGCGAAGCACGCGTAGAATCGTCTTTCGCGTGCGACAAgtgtctagaaaaattctctACTAGACGAGGTTTGCGAAAACACTCGATTTCGCATGTTACTCTCAGATGTAGCGTATGCGAAGAAGAGTTCGACTCGTTGGAGAAGCTGAGAAACCATCGGGCAAAGCATGTCGTTGAAGGTGTATTGTCCGAACAAGATCTGGAAACGGGTACGGAGTTTCCGCTTGATAGGGATGAAGATGGCTGCCGGGTTGTCGGGGACAAACGGAAAGGAGAAGAACAGGTACAAGGACCTCACGAAGGAAAAAGGCGGAAAGAAAAGGAGGGGGAACGGGTACGGGAACGAGAAGCCCAGACACAATTGTCGGAGAACGTATTGAAGAGAAGCGCAAGAAACACGGAGATGCATTCGGAGGCCGAGTTCAGTTGTAAGGTATGCCATCAGCGATACACGAGAATGGATTTGTTGCAAAGGCATATGGAGCAACACGAGCgtattaaaaattacaaatgTACAGAATGCAATAAAACGTTCGGTAATGAACTGACTTTACGAAATCATCTTATAGCTACGAATCACAAAACTTTTGTCCGAGGACAGGAGTACGATCCAAACAAACGGATCAAACGAGTGGCTGCAAGAGCAGCTCagaaaataattgataaaattaaGACGGAAGACGGTCTGGAAGATTACGAGGACGAGGATGAGCGGGAGGAGAAGATAGCCGAGCGTAAATCCACAGACGGAAGAAACAAGCGTGAGATTTTGTCACCGAAGAAACACAATTGCTCGAAAAAGGAGCTGGAATGCACGAGCTGTAACAAAAAGTGTAGCTCGAAACAGACGCTAGCGAAACACATGGAACAACACGTGAAGGAGGAGAAAACTGTCAaggtggagagagagagggagagagaaaaagagaaggaacgagagagggagagggagagagaaaggcaAAGACAAAGGCAGGGCACCTTTGGCGACAAGAAAGAACGACAGAGGAGCTGCGCGAACAAGGACGCGGTTGAATCGAGCGAGGTCAACAAGGACGATGACTACGATTCAGATTTCGAAAGCGGGTTGGATTGGCCGATGGACAATCACGAATGCGTAAAGTGCAAGAAACGATACAGCACGAAGAAATCGTTGCTGCGCCATCAACTTTTGCACGAGGAACCGAACTTCGAATGCGACATTTGCAACGTGAAATTCTATCGTAAAGACAAGTTGAAAGCTCACTACGATAAGTGCTCGGAAAAGAACCCTGACCAGGTGAGAAAATGCAACATCTGCGGGGACAGTTTCGAAAATAACGAGATATTGCGAGAGCATAGATCGAAACACGTGACAGAAGGCATTCTCACCGAGGAGGACCTGAGGGATATCGAGCCGCGGCCAGAAGAGAAGAAGCCGGGAGAGAAGATCGGTAGGAAAAGAAGGACCGATATAGTGGGATTGGAGTGTACCGAATGCAACAAACAGTACACCTCTAGGAAAGGGCTACTGCGTCACATTCAGGTTCACGAAGGGAAGAAGTACCTTTGTGACATATGCCCGAAAAAGTTCTACAGAAGAGAACATTTGAAGATACACGTGGCCAAGCACAACATGATCAAACCGTACAAGTGTACGCGCTGTACGAAACGTTTCATCAAAGAAGAACAACTGACCAATCATTTGTCGAAACACGATCGAACATTTAAGAAGAATAAAGAAACTGATAGCTCGAAAAGATTTCTTTGCGAGATTTGCTCGAAAAGTTTCACCCAATCGACGACGTTGATCGCGCATCTCAGGGCTCACAACGGCATTAAACCATACGTTTGCGAGGTCTGTTCTCGACCGTTCACTACAAACGCCTATCTAAAGATGCACATGAGAACGCACACTCAAGAACGGCCGTACATTTGTCAGTACTGTTCGCGCGCTTTCGCCAGAGCCGACACGCTCGCAAATCACTTGACATCGCACACCGGCGAGGCCAAGTATCACTGCAAGTACTGTCCGAAAAACTTCCGTCGCCTGAAATCTCTGAAGGAGCACGTTTTCATTCACACGGGTCAAAGACCGTACGCTTGCCCGACTTGCGACCGCCGTTTCAATAACAACGGAAGTCGCTACGCCCATAGCAAGAGAtgcaaacaaaattttgttcaaaATCAGAATCGTGGCCAATCGTTGACGCAAGTACAATCTTCCCAGAATCAGCAAAGAATATTGCATCAGCAAACCACTCTTGCACAGACGCAACTGTTGAAAGCGCAGAACATTAAAACTATTACGATCACCAGACAACCAGATGCCGTTGCTGCTCAACACGTCGCGCAGCATCAAGAAATAATAATGCCCCTGATCTTTCCTTTGACCGTTACAGTCGCCGATATCAGCGAAGAAGTTATATTACCGGAAGGAACCAAATTGTTTACGACCACTTAA
- Protein Sequence
- MDAVGINTSDSAQNEEESIVSTVEICRVCLLGNLVMRDLFLENEVSSLSAKAMSFTNVKMLPGDGLPTRVCCVCADKLESAYEFKLQVEQADTVLREKFVTMNMKEELFFNEVEVHLEVGERNEDIERMHIENHYENTVETLETMSGDEKSSLLKDQLALLQVGKLAEQEQTITEQHDSTVMEEGIVSEQMLDECSNREEDNGKTVDIITKDEIILKHENISTAEHDYILHPDCILQNNSQRKEGTGEQEEEREEQQLISEESFSRDDCVQYVNMLVKAADVTRKEDGGDVDPSEIEQPDKEGSKTNAKLEADSQCQSETRRSKRKLVQSSMHSMRDSDEENYFENLNLSSRLKKAEDSDKSERIFFMCYLCDKEFLSKNVLREHMHSHEEVREVLSLRKSVEKPEKDVERCNNLTKLPPSGKRSNKCPYCGKQYIYIISFSKHLKMHEKEKEEAKEESLPLEISFHEDEHSLDFEDFMDKDNMNSEYRKRVRKREGVAVTKSEKEEPMVEQTEEEQQAEEEEAVDAEKESEGTGREEKAKRKEKETSSEGKERICNRNENGERKKREARVESSFACDKCLEKFSTRRGLRKHSISHVTLRCSVCEEEFDSLEKLRNHRAKHVVEGVLSEQDLETGTEFPLDRDEDGCRVVGDKRKGEEQVQGPHEGKRRKEKEGERVREREAQTQLSENVLKRSARNTEMHSEAEFSCKVCHQRYTRMDLLQRHMEQHERIKNYKCTECNKTFGNELTLRNHLIATNHKTFVRGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYEDEDEREEKIAERKSTDGRNKREILSPKKHNCSKKELECTSCNKKCSSKQTLAKHMEQHVKEEKTVKVEREREREKEKERERERERERQRQRQGTFGDKKERQRSCANKDAVESSEVNKDDDYDSDFESGLDWPMDNHECVKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFVQNQNRGQSLTQVQSSQNQQRILHQQTTLAQTQLLKAQNIKTITITRQPDAVAAQHVAQHQEIIMPLIFPLTVTVADISEEVILPEGTKLFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00865472;
- 90% Identity
- iTF_00865472;
- 80% Identity
- -