Basic Information

Insect: Halictus rubicundus
Gene Symbol: -
Assembly: GCA_028454235.1
Location: CM052175.1:90746-95426[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.057 4.6 7.9 2.4 1 23 374 396 374 396 0.97

2 18 0.00078 0.064 13.7 0.9 2 23 433 454 432 454 0.98

3 18 0.0016 0.13 12.8 0.9 1 23 581 603 581 603 0.95

4 18 0.0026 0.21 12.1 0.4 2 23 607 628 606 628 0.96

5 18 0.00022 0.018 15.5 1.8 1 23 721 743 721 743 0.97

6 18 0.0003 0.024 15.0 0.5 1 21 749 769 749 773 0.92

7 18 0.00013 0.01 16.2 2.7 2 23 853 874 852 874 0.96

8 18 0.00032 0.026 14.9 4.4 1 23 956 978 956 978 0.96

9 18 0.00029 0.024 15.1 0.7 1 20 983 1002 983 1004 0.94

10 18 0.043 3.5 8.2 0.5 2 23 1015 1036 1015 1036 0.97

11 18 2.9e-05 0.0024 18.2 0.6 2 23 1075 1096 1074 1096 0.97

12 18 2.7e-05 0.0022 18.3 1.6 1 23 1101 1123 1101 1123 0.95

13 18 0.00015 0.012 16.0 2.9 1 23 1129 1151 1129 1151 0.98

14 18 4.7e-06 0.00039 20.7 0.4 1 23 1167 1189 1167 1189 0.95

15 18 3.8e-07 3.1e-05 24.1 0.6 1 23 1195 1217 1195 1217 0.99

16 18 4.2e-05 0.0034 17.7 0.2 1 23 1223 1245 1223 1245 0.97

17 18 0.00015 0.013 15.9 4.1 1 23 1251 1273 1251 1273 0.96

18 18 0.011 0.89 10.1 0.4 1 20 1279 1298 1279 1300 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.057	4.6	7.9	2.4	1	23	374	396	374	396	0.97
2	18	0.00078	0.064	13.7	0.9	2	23	433	454	432	454	0.98
3	18	0.0016	0.13	12.8	0.9	1	23	581	603	581	603	0.95
4	18	0.0026	0.21	12.1	0.4	2	23	607	628	606	628	0.96
5	18	0.00022	0.018	15.5	1.8	1	23	721	743	721	743	0.97
6	18	0.0003	0.024	15.0	0.5	1	21	749	769	749	773	0.92
7	18	0.00013	0.01	16.2	2.7	2	23	853	874	852	874	0.96
8	18	0.00032	0.026	14.9	4.4	1	23	956	978	956	978	0.96
9	18	0.00029	0.024	15.1	0.7	1	20	983	1002	983	1004	0.94
10	18	0.043	3.5	8.2	0.5	2	23	1015	1036	1015	1036	0.97
11	18	2.9e-05	0.0024	18.2	0.6	2	23	1075	1096	1074	1096	0.97
12	18	2.7e-05	0.0022	18.3	1.6	1	23	1101	1123	1101	1123	0.95
13	18	0.00015	0.012	16.0	2.9	1	23	1129	1151	1129	1151	0.98
14	18	4.7e-06	0.00039	20.7	0.4	1	23	1167	1189	1167	1189	0.95
15	18	3.8e-07	3.1e-05	24.1	0.6	1	23	1195	1217	1195	1217	0.99
16	18	4.2e-05	0.0034	17.7	0.2	1	23	1223	1245	1223	1245	0.97
17	18	0.00015	0.013	15.9	4.1	1	23	1251	1273	1251	1273	0.96
18	18	0.011	0.89	10.1	0.4	1	20	1279	1298	1279	1300	0.89

Sequence Information

Coding Sequence: ATGGACGCGGTGGAAATAAATACGTCCGATTCGGCGCAAAATGAGGAGGAAAGCATCGTGTCGACGGTGGAGATATGTCGTGTTTGTCTTCTGGGTAATCTAGTGATGCGGGACTTGTTTCTAGAGAATGAGGTTTCTTCTCTATCGACGAAAGCGATGAGTTTTACAAACGTTAAGATGTTACCCGGCGATGGATTGCCAACGCGCGTATGTTGCATGTGCGCGGATAAACTCGAATCCGCGTACGAATTCAAGCTACAGGTGGAACAAGCCGACACGGTTCTAAGGGAAAAGTTTGTTACCATGAATATGAAGGAAGAATTATTTTTTAACGAAGTCGAAGTACACCTGGAGGTAGGAGAAAGAAACGAGGATATAGAACGGATCCACATAGAGAATCATTATCAAAACGCGGTAGAAACGTTGGAGACAATGTCTGGAGAAGGAAAGTCGTCCCTTCTGAAGGATCAGTTGGCTTTGTTGCAAGTGGGAAAGTTGGCTGATCAGGAACAGACGATAACCGAACAGCACGATAGTTCGGTGATGGAAGAAGTGATCGTGTCGGAACCGATATTGGATGAGTGTTCCAACAGAGAGGAAGAAAACGATAAGGCTGTGGACATTATGACCAAGGACGAAATAATCCTGAAACACGAGACCGCTGAAAATTGTATCAAGAATATTTCAACGGTAGAACACGATTACATATTGCAACAAGAATGCATACTGACGAACGATAATCAAGAAAAAGAAGGAATAGGGGAACAAGAGGAAGATCAAGAAGAGCAGCAGTTGATATCGGAAGAATCGTTTTCGCGCGACGATTGCGTACAGTATGTAAACATGTTGGTGAAAGCAGCCGACGTGACTCGTAAAGAAGACGGAGAAGAGGAATTACCGAGCGAAATCGAGCAACCCGATGAAGAGGGTTCGAGAACAAATGCAAAGGCGGAACAAGATTCTCAGTATCAAAGCGAGATGAGAAGAAGCAAACGCAAGCTAATCCGAAGAAACTCTGACCCCGTGCGAGATTCCGACGAGGAGAATTATTTTGAAAACTTGAATCTCAGTTCGCGACTGAAGAAAACCGAGGACTCTGACAAATTCGAAAGAATCTTTTTCATGTGTTACCTTTGCGACAAAGAGTTTTTATCGAAAAACGTTTTGCGGGAGCATATGCATTCTCACGAGGAAGTCCGAAAGGTATTGTCGTTGCGAAAGTCCTTGGAAAAGCCAGAGAAGGACGTCGAAAGATGCAATCTCACGAAATTACCTCCATCTGGTAAAAGATCGAATAAATGCCCGTACTGCGGTAAACAATATATATACATAATATCGTTCAGCAAACATTTGAAGAAGCACGAGAAAGAGAAGGAAGAGGCGAAAGAGGAATCGTTGCCGTTGGAAATTTCGTTTCACGAAGACGAGCACAGTTTGGACTTTGAGGATTTTGCGGATAAAGATAACTTGAATTCCGAGTGCAGAAAAAGAGTCAGGAGAAGAGAAGGCGCGGCGGCGGCTGCAGCAAAATCGGAGAAAGAGGAAAGAATGGTACAGCAGCAGATGGAGGAAAAGGAGGAAGAAGCCGTAGACGAAGAAAACCTGCAGACCGAGGGAATCGGATGCGAGGAGAAAGCGAAACGGAGAGAGAAAGAGACAAGCAGCGAAGGTAAAGAAAGGATCTGTAATCGAAACGAAAATGGGGAACGAAAGAAACGCGAAGCGCGCGTAGAATCGTCGTTCGCCTGCGACCAGTGTCTAGAAAAATTCTCTACTAGGCGAGGTTTGCGGAAACACACGATTTTGCATGCTGCTCTCAGATGTAGCGTGTGCGAAGAAGAGTTCGACTCGTTGGAGAAGCTGAGAAACCATCGTGCAAAGCATGTCGTTGAAGGTGTATTGTCCGAACAAGATCTGGAAACGGGTACAGAGTTTTCGATTGACAGGGACGAGGACGGCTGTCGGGTTAGCGTCGACAAACTGAAAGAAGAGGAACAAGGAAATCACGAAGGAAGAAGGCGGAAAGAAACGGAGGGGGAACGAGAACCAGAACGAGAACGTGAACGTGAACGTGAACGAGAACGAGAACCCCAGGCACAATTGTCGGAGAACGCGTTCAAGAGAAACGCAAGAAACACGGAGATGCATTCGGAGGTCGAGTTCAGTTGTAAGGTATGCTATCAGCGATACACGAGAATGGATTTGTTGCAGAGGCATATGGAGCAACACGAACGTGTGAAAAATTACAAATGTACAGAATGCAATAAAACGTTCGGTAGTGAACTGACTTTACGAAATCATCTTATAGCTACGAATCACAAAACTTTTGTTCGAGGACAGGAGTACGATCCAAACAAACGGATCAAACGAGTGGCTGCGAGAGCAGCTCAGAAAATAATTGATAAAATCAAGACGGAAGACGGCCTGGAAGATTTCGAGGACGAGGATGAACGGGAGGAGAAGATAGTCGAGCGGAACTCCACGGAGGGACATTACGGACGGAACAAGCGTGACATTTTCTCACCGAAGAAACACAATTGCTCGAAAAAGGAGCTGGAATGCACGGGTTGCAACAAAAAGTGTAGCTCGAAACAGTCGCTAGCGAAGCACATGGAACAACACGTGAAGGAGGAGAAAACTGTCAAGTTGGAGAGGGAAAGGGAGAGGGAGAAGGAGAGAGAGAGAGAAAGGGAGCGAGAGAAGGAGAGGGATAAAGAGAGGCAAAGACAAAAGCAGGGCAGCTGCGGGGACAAGAGAGAACGACAGAGGAGCTGCACGAACGATGCGGTTGAATCGAGCGAGCTCAACAAGGACGACGACTACGATTCGGATTTTGAAAGCGGGTTGGATTGGCCGATGGACAATCACGAATGCGTAAAGTGCAAAAAACGATACAGCACGAAGAAATCGTTGCTGCGCCATCAACTTTTGCACGAAGAACCAAACTTCGAATGCGACATTTGCAACGTGAAATTCTATCGTAAGGACAAGTTGAAAGCTCACTACGACAAATGCTCGGAAAAGAACCCTGACCAAGTGAGAAAGTGCAATATCTGCGGGGACAGTTTCGAAAATAACGAGATATTGCGAGAGCATAGATCGAAACACGTGACAGAAGGCATTCTGACCGAGGAGGACCTGAGGGATATCGAGCCGCGGCCGGAAGAGAAGAAGCCAGGAGAGAAGATCGGTAGAAAAAGAAGGACCGATATAGTGGGATTGGAGTGTACCGAATGCAACAAACAGTACACCTCTAGGAAAGGGCTACTGCGTCACATTCAGGTTCACGAAGGGAAAAAGTACCTTTGCGACATATGTCCGAAAAAGTTCTACAGAAGAGAACATTTGAAGATCCACGTGGCCAAGCACAACATGATCAAACCTTACAAGTGTACGCGCTGTACGAAACGTTTCATCAAAGAAGAACAACTGACCAATCATTTGTCGAAGCACGACCGAACTTTTAAGAAGAACAAAGAAACCGACAGCTCTAAGAGATTTCTTTGCGAGATTTGCTCGAAAAGTTTCACCCAATCGACGACGTTGATCGCGCATCTCAGGGCTCACAACGGCATTAAACCGTACGTTTGCGAGGTCTGTTCTCGACCGTTCACTACAAACGCCTATCTAAAGATGCACATGAGGACGCACACCCAAGAACGGCCGTACATTTGTCAGTACTGTTCGCGCGCTTTCGCCAGAGCCGACACGCTCGCGAATCACTTGACATCGCACACCGGCGAGGCCAAGTATCATTGCAAGTATTGCCCGAAAAACTTCCGCCGCCTGAAATCCCTGAAGGAGCACGTTTTCATTCACACGGGTCAGAGACCGTACGCTTGCCCGACTTGCGACCGCCGTTTCAACAACAACGGAAGTCGCTACGCCCATAGCAAGAGATGCAAACAAAATTTTGCTCAGAATCAGAATCAGAATCGTGGTCAAACGTTGACGACGCAAGTACAATCTACCCAGAATCAGCAAAGAGTATTGCATCAGCAAACCGCTCTTGGACAGACGCAACTGCTGAAAGCGCAGAACATTAAAACCATTACGATCACTAGACAACCAGATGTCGTTGCTGCCCAACACGTCGCGCAGCATCAAGAAATAATAATGCCCCTGATCTTTCCTTTAACCGTCACAGTCGCCGATATCAGCGAAGAAGTTATATTACCGGAAGTAACCAAATTGTTTACGACCACTTAA
Protein Sequence: MDAVEINTSDSAQNEEESIVSTVEICRVCLLGNLVMRDLFLENEVSSLSTKAMSFTNVKMLPGDGLPTRVCCMCADKLESAYEFKLQVEQADTVLREKFVTMNMKEELFFNEVEVHLEVGERNEDIERIHIENHYQNAVETLETMSGEGKSSLLKDQLALLQVGKLADQEQTITEQHDSSVMEEVIVSEPILDECSNREEENDKAVDIMTKDEIILKHETAENCIKNISTVEHDYILQQECILTNDNQEKEGIGEQEEDQEEQQLISEESFSRDDCVQYVNMLVKAADVTRKEDGEEELPSEIEQPDEEGSRTNAKAEQDSQYQSEMRRSKRKLIRRNSDPVRDSDEENYFENLNLSSRLKKTEDSDKFERIFFMCYLCDKEFLSKNVLREHMHSHEEVRKVLSLRKSLEKPEKDVERCNLTKLPPSGKRSNKCPYCGKQYIYIISFSKHLKKHEKEKEEAKEESLPLEISFHEDEHSLDFEDFADKDNLNSECRKRVRRREGAAAAAAKSEKEERMVQQQMEEKEEEAVDEENLQTEGIGCEEKAKRREKETSSEGKERICNRNENGERKKREARVESSFACDQCLEKFSTRRGLRKHTILHAALRCSVCEEEFDSLEKLRNHRAKHVVEGVLSEQDLETGTEFSIDRDEDGCRVSVDKLKEEEQGNHEGRRRKETEGEREPEREREREREREREPQAQLSENAFKRNARNTEMHSEVEFSCKVCYQRYTRMDLLQRHMEQHERVKNYKCTECNKTFGSELTLRNHLIATNHKTFVRGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDFEDEDEREEKIVERNSTEGHYGRNKRDIFSPKKHNCSKKELECTGCNKKCSSKQSLAKHMEQHVKEEKTVKLEREREREKEREREREREKERDKERQRQKQGSCGDKRERQRSCTNDAVESSELNKDDDYDSDFESGLDWPMDNHECVKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFAQNQNQNRGQTLTTQVQSTQNQQRVLHQQTALGQTQLLKAQNIKTITITRQPDVVAAQHVAQHQEIIMPLIFPLTVTVADISEEVILPEVTKLFTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00865472;
90% Identity: iTF_00762698;
80% Identity: -