Basic Information

Insect: Lasioglossum malachurum
Gene Symbol: -
Assembly: GCA_028455605.1
Location: CM052315.1:18814496-18819083[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.065 4.8 7.9 2.4 1 23 367 389 367 389 0.97

2 18 0.00072 0.053 14.0 0.6 2 23 427 448 426 448 0.98

3 18 0.0025 0.18 12.4 1.2 1 23 576 598 576 598 0.95

4 18 0.0022 0.16 12.5 0.4 2 23 602 623 601 623 0.96

5 18 0.00013 0.0093 16.4 3.3 1 23 708 730 708 730 0.97

6 18 0.00026 0.019 15.5 0.5 1 21 736 756 736 760 0.92

7 18 0.0012 0.091 13.3 3.4 2 23 840 861 839 861 0.96

8 18 0.00037 0.028 14.9 4.4 1 23 936 958 936 958 0.96

9 18 0.00033 0.025 15.1 0.7 1 20 963 982 963 984 0.94

10 18 0.049 3.7 8.3 0.5 2 23 995 1016 995 1016 0.97

11 18 3.4e-05 0.0025 18.2 0.6 2 23 1055 1076 1054 1076 0.97

12 18 3.1e-05 0.0023 18.3 1.6 1 23 1081 1103 1081 1103 0.95

13 18 0.00017 0.013 16.0 2.9 1 23 1109 1131 1109 1131 0.98

14 18 5.4e-06 0.0004 20.7 0.4 1 23 1147 1169 1147 1169 0.95

15 18 4.4e-07 3.3e-05 24.1 0.6 1 23 1175 1197 1175 1197 0.99

16 18 4.8e-05 0.0036 17.7 0.2 1 23 1203 1225 1203 1225 0.97

17 18 0.00018 0.013 15.9 4.1 1 23 1231 1253 1231 1253 0.96

18 18 0.013 0.93 10.1 0.4 1 20 1259 1278 1259 1280 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.065	4.8	7.9	2.4	1	23	367	389	367	389	0.97
2	18	0.00072	0.053	14.0	0.6	2	23	427	448	426	448	0.98
3	18	0.0025	0.18	12.4	1.2	1	23	576	598	576	598	0.95
4	18	0.0022	0.16	12.5	0.4	2	23	602	623	601	623	0.96
5	18	0.00013	0.0093	16.4	3.3	1	23	708	730	708	730	0.97
6	18	0.00026	0.019	15.5	0.5	1	21	736	756	736	760	0.92
7	18	0.0012	0.091	13.3	3.4	2	23	840	861	839	861	0.96
8	18	0.00037	0.028	14.9	4.4	1	23	936	958	936	958	0.96
9	18	0.00033	0.025	15.1	0.7	1	20	963	982	963	984	0.94
10	18	0.049	3.7	8.3	0.5	2	23	995	1016	995	1016	0.97
11	18	3.4e-05	0.0025	18.2	0.6	2	23	1055	1076	1054	1076	0.97
12	18	3.1e-05	0.0023	18.3	1.6	1	23	1081	1103	1081	1103	0.95
13	18	0.00017	0.013	16.0	2.9	1	23	1109	1131	1109	1131	0.98
14	18	5.4e-06	0.0004	20.7	0.4	1	23	1147	1169	1147	1169	0.95
15	18	4.4e-07	3.3e-05	24.1	0.6	1	23	1175	1197	1175	1197	0.99
16	18	4.8e-05	0.0036	17.7	0.2	1	23	1203	1225	1203	1225	0.97
17	18	0.00018	0.013	15.9	4.1	1	23	1231	1253	1231	1253	0.96
18	18	0.013	0.93	10.1	0.4	1	20	1259	1278	1259	1280	0.89

Sequence Information

Coding Sequence: ATGGACGCCGTAGGAATAAATACGTCCGATTCGGCGCAAAATGAGGAGGAAAACATCGTGTCGACGGTGGAAATATGTCGTGTTTGTCTTCTGGGTAATCTAGTGATGCGGGACTTGTTTCTAGAGAACGAGGTTTCTTCTCTATCGGCGAAAGCGATGAGTTTTACAAACGTTAAGATGTTACCCGGCGATGGATTGCCAACGCGAGTATGTTGCATATGCGCGGATAAACTTGAATCCGCGTACGAATTCAAGCTACAGGTGGAACAAGCTGACACGGTTCTAAGAGAGAAGTTTGTCACGATGAACATGAAGGAGGAATTATTTTTTAACGAAGTCGAAGTACACCTGGAGGTAGGAGAAAGAAACGAGGACGTAGAACCGATGCATATAGAGAATCATTATCAAAGCACGGTAGAAACATTGGAGACAATGTCCGGAGATGAAAAGTCATCCCTTTTGAAGGATCAGTTGGCTTTGTTGCAAGTGGGGAAGTTGGCTGAGCAGGAACAAACGATAACCGAACAGCACGATACTACCGTGATGGAAGAAGGGATCGTATCGGAACAGATGTTGGATGAGTGTTCCAACAGAGAGGAAGATAACGGTAAGACTGTGGACATTATAACCAAGGACGAAATAATCCTGAAACACGAGAATATATCGACGGTAGAGCACGATTACATATTGCATCCAGACTGCATACTGGAAAATGATAGTCAACGAAAAGAAGGAACAGGGGAACAAGTGGAAGAACGAGAAGAGCAGCAGTTGATATCGGAAGAATCGTTTTCGCGCGACGATTGCGTACAGTATGTAAATATGTTGGTGAAAGCAGCTGACGTGACTCACAGAGAAGACAGAGAAGACGTAGATCAGAGCGAAATCGAGCAGCCCGATGAAGAGGGTTCAAGAACAAATGCAAAGCTGGAAGAAGATTCTCAGTGTCAAAGCGAGACGAGAAGAAGCAAACGTAAGCTAGTTCAAAGTAGCACCAACCCTGTGCGAGATTCCGACGAGGAGAATTATTTTGAAAACTTAAATCTAAGTTCGCGATTGAAGAAAGCCGAGGACTCCGATAAATCGGAAAGAATATTTTTCATGTGCTACCTTTGCGACAAAGAGTTTTTATCGAAAAACGTTTTGCGGGAGCATATGCATTCCCACGAGGAAGTCCGAGAGGTATTGTCGTTGCGAAAATCCGTGGAAAAGCCAGAGAAAGATGTCGAAAGATGCAATAATCTCACGAAATTACCTCCATCTGGTAAAAGATCGAACAAATGCCCCTACTGCGGTAAACAATATATATACATAATATCGTTCAGCAAACATTTGAAGATGCACGAGAAAGAGAAAGAAGAGGCAAAAGAGGAATCGTTGCCGTTAGAAATATCGTTTCACGAAGACGAGCACAGTTTGGATTTTGAGGATTTTACGGATAAAGATAACATGAATTCCGAGTACCGAAAAAGAGTCAGGAAAAGAGAAGGCGTGGCTGTAACAAAATCGGAGAAAGAGGAACCTATGGTAGAGCAGACGGAGGAAGAGCAACAGGCAGAGGAGGGAGAAGACGTAGACGCACAAAAGAAGGAGTCCGAAGGAACCGAACACGAGGAGAAAGCGAAACGGAAAGAAAAAGAGACAAGCAGCGAGGGTAAAGAAAGGATCTGTAATCGAAACGAAAATGGGGAACGAAAGAAACGCGAAGCACGCGTGGAATCGTCTTTCGCATGCGACAAGTGTCTAGAAAAATTCTCTACTAGACGAGGTTTGCGAAAACACTCGATTTCGCATGTTGCTCTCAAATGTAGTGTGTGCGAAGAAGAGTTCGACTCGTTGGAGAAGCTGAGAAACCATCGGGCAAAGCATGTCGTTGAAGGTGTATTGTCCGAACAAGATCTGGAAACGGGTACAGAGTTTCCGCTTGACAGGGATGAAGATGGCTGCCGGGTTGTCGGGGAAAAACGGAAAGGAGAAGAACAGGTACAAGGACCTCACGAAGGAAAAAGGCGGAAAGAAAAGGAGGGGGAACGGGCACGGGAACGAGAAGTCCAGACACAATTGTCGGAGAACGTGTTGAAGAGAAGCGCAAGAAACACGGAGATGCATTCGGTGGTCGAGTTCAGTTGTAAGGTATGCCATCAGCGATACACGAGAATGGATTTGTTGCAAAGGCATATGGAGCAACACGAGCGTATTAAAAATTACAAATGTACAGAATGCAATAAAACGTTCGGTAATGAACTGACTTTACGAAATCATCTTATAGCTACGAATCACAAAACTTTTGTCCGAGGACAGGAGTACGATCCAAACAAACGGATCAAACGAGTGGCTGCAAGAGCAGCTCAGAAAATAATTGATAAAATTAAGACGGAAGACGGTCTGGAAGATTACGAGGACGAGGATGAACGGGAAGAGAAGATAGCCGAGCGTAAATCCACCGACGGAAATTACGGAAGGAACAAGCGTGAGATTTTGTCACCGAAGAAACACAATTGCTCGAAAAAGGAGCTGGAATGCACGAGTTGTAACAAAAAGTGTAGTTCGAAACAGTCGCTGGCGAAACACATGGAACAACATGTGAAGGAGGAGAAAACTATTAAGTTGGAGAGAGAAAAAGAGAAGGACCGAGAGAGGGAAAGGGAGAGAGAAAGGCAAAGACAAAGGCAGGGTACCTTTGGCGACAAGAAAGAACGACAGAGGAGCTGCGCGAACAACGACGCGGTTGAATCGAGCGAGGTCAACAAGGACGATGACTACGATTCAGATTTCGAAAGCGGGTTGGATTGGCCGATGGACAATCACGAATGCGTAAAGTGCAAGAAACGATACAGCACGAAGAAATCGTTGCTGCGCCATCAACTTTTGCACGAGGAACCGAACTTCGAATGCGACATTTGCAACGTGAAATTCTATCGTAAAGACAAGTTGAAAGCTCACTACGACAAGTGCTCGGAAAAGAACCCTGACCAGGTGAGAAAATGCAACATCTGCGGGGACAGTTTCGAAAATAACGAGATATTGCGAGAGCATAGATCGAAACACGTGACAGAAGGCATTCTCACCGAGGAGGACCTGAGGGATATTGAGCCGCGGCCAGAAGAGAAGAAGCCGGGAGAGAAGATCGGTAGGAAAAGAAGGACCGATATAGTGGGATTGGAGTGTACCGAATGCAACAAACAGTACACCTCTAGGAAAGGGTTACTGCGTCACATTCAGGTTCACGAAGGGAAGAAGTACCTTTGCGACATATGCCCGAAAAAGTTCTACAGAAGAGAACATTTGAAGATACACGTGGCTAAGCACAACATGATCAAACCGTACAAGTGTACGCGCTGTACGAAACGTTTCATCAAAGAAGAACAACTGACCAATCATCTGTCGAAACATGATCGAACATTTAAGAAGAATAAAGAAACTGATAGCTCGAAAAGATTTCTTTGCGAGATTTGCTCGAAAAGTTTCACCCAATCGACGACGTTGATAGCGCATCTCAGGGCTCACAACGGCATTAAACCGTACGTTTGCGAGGTCTGTTCTCGACCGTTCACTACAAACGCCTATCTAAAGATGCACATGAGAACGCACACCCAGGAACGGCCGTACATTTGTCAGTACTGTTCGCGCGCTTTCGCCAGAGCCGACACGCTCGCCAATCACTTGACATCGCACACCGGCGAGGCCAAGTATCACTGCAAGTACTGTCCGAAAAACTTCCGTCGCCTGAAATCCCTGAAGGAGCACGTTTTCATTCACACGGGTCAAAGACCGTACGCTTGCCCAACTTGCGACCGCCGTTTCAATAACAACGGAAGTCGCTACGCCCATAGCAAGAGATGCAAACAAAATTTTGTTCAAAATCAGAATCGTGGCCAAACGTTGACGCAAGTACAATCTTCCCAGAATCAGCAAAGAATATTGCATCAGCAAACCACTCTTGGACAGACACAACTGTTGAAAGCGCAGAACATTAAAACTATTACGATCACTAGACAACCAGATGCCGTTGCTGCTCAACACGTCGCGCAGCATCAAGAAATAATAATGCCCCTGATCTTTCCTTTAACCGTCACAGTCGCCGATATCAGCGAAGAAGTTATATTACCGGAAGGAACCAAATTGTTTACGACCACTTAA
Protein Sequence: MDAVGINTSDSAQNEEENIVSTVEICRVCLLGNLVMRDLFLENEVSSLSAKAMSFTNVKMLPGDGLPTRVCCICADKLESAYEFKLQVEQADTVLREKFVTMNMKEELFFNEVEVHLEVGERNEDVEPMHIENHYQSTVETLETMSGDEKSSLLKDQLALLQVGKLAEQEQTITEQHDTTVMEEGIVSEQMLDECSNREEDNGKTVDIITKDEIILKHENISTVEHDYILHPDCILENDSQRKEGTGEQVEEREEQQLISEESFSRDDCVQYVNMLVKAADVTHREDREDVDQSEIEQPDEEGSRTNAKLEEDSQCQSETRRSKRKLVQSSTNPVRDSDEENYFENLNLSSRLKKAEDSDKSERIFFMCYLCDKEFLSKNVLREHMHSHEEVREVLSLRKSVEKPEKDVERCNNLTKLPPSGKRSNKCPYCGKQYIYIISFSKHLKMHEKEKEEAKEESLPLEISFHEDEHSLDFEDFTDKDNMNSEYRKRVRKREGVAVTKSEKEEPMVEQTEEEQQAEEGEDVDAQKKESEGTEHEEKAKRKEKETSSEGKERICNRNENGERKKREARVESSFACDKCLEKFSTRRGLRKHSISHVALKCSVCEEEFDSLEKLRNHRAKHVVEGVLSEQDLETGTEFPLDRDEDGCRVVGEKRKGEEQVQGPHEGKRRKEKEGERAREREVQTQLSENVLKRSARNTEMHSVVEFSCKVCHQRYTRMDLLQRHMEQHERIKNYKCTECNKTFGNELTLRNHLIATNHKTFVRGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYEDEDEREEKIAERKSTDGNYGRNKREILSPKKHNCSKKELECTSCNKKCSSKQSLAKHMEQHVKEEKTIKLEREKEKDRERERERERQRQRQGTFGDKKERQRSCANNDAVESSEVNKDDDYDSDFESGLDWPMDNHECVKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFVQNQNRGQTLTQVQSSQNQQRILHQQTTLGQTQLLKAQNIKTITITRQPDAVAAQHVAQHQEIIMPLIFPLTVTVADISEEVILPEGTKLFTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00865472;
90% Identity: iTF_00865472;
80% Identity: -