Apur005534.1
Basic Information
- Insect
- Augochlora pura
- Gene Symbol
- -
- Assembly
- GCA_028453695.1
- Location
- CM052105.1:10260037-10264565[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.058 4.1 7.9 2.4 1 23 371 393 371 393 0.97 2 18 0.00079 0.056 13.8 0.9 2 23 430 451 429 451 0.98 3 18 0.00068 0.048 14.0 1.3 1 23 575 597 575 597 0.96 4 18 0.0033 0.23 11.8 0.7 2 23 601 622 600 622 0.96 5 18 0.066 4.6 7.7 4.1 1 23 701 723 701 723 0.97 6 18 0.00044 0.031 14.6 0.4 1 21 729 749 729 753 0.92 7 18 0.0028 0.2 12.0 2.5 2 23 833 854 832 854 0.95 8 18 0.00033 0.023 15.0 4.4 1 23 912 934 912 934 0.96 9 18 0.00029 0.021 15.1 0.7 1 20 939 958 939 960 0.94 10 18 0.044 3.1 8.3 0.5 2 23 971 992 971 992 0.97 11 18 3e-05 0.0021 18.2 0.6 2 23 1031 1052 1030 1052 0.97 12 18 2.7e-05 0.0019 18.4 1.6 1 23 1057 1079 1057 1079 0.95 13 18 0.00015 0.011 16.0 2.9 1 23 1085 1107 1085 1107 0.98 14 18 4.8e-06 0.00034 20.7 0.4 1 23 1123 1145 1123 1145 0.95 15 18 3.9e-07 2.8e-05 24.2 0.6 1 23 1151 1173 1151 1173 0.99 16 18 4.2e-05 0.003 17.8 0.2 1 23 1179 1201 1179 1201 0.97 17 18 0.00016 0.011 16.0 4.1 1 23 1207 1229 1207 1229 0.96 18 18 0.011 0.78 10.2 0.4 1 20 1235 1254 1235 1256 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGGAATAAATACGTCTGATTCGGCGCAAAATGAGGAGGAAAGCATTGTGTCGACAGTGGAAATATGTCGCGTTTGTCTTCTGGGTAATCTCGTGATGCGGGACTTGTTTCTAGAGAACGAGGTTTCTTCACTATCGACAAAAGCGATGAGTTTCGCAAATGTTAAGATGGTACCTGGAGATGGTTTGCCGACGCGTGTATGTTGCCTTTGCGCTGATAAACTTGAATCTGCATACGAATTTAAACTACAGGTGGAACAAGCGGATACAGTTCTAAGAGAAAAGTTTGTTACCATGAATATGAAGGAAGAATTATTTTTTAACGAAGTCGAAGTACATCTGGAAGTAGGAGAAAGAAATGAGGACATAGAGCGAATGCATATAGAAAGTCATTATCAGAATGCTGTAGAAACGTTGGAGACCATGTCCAATGATGAAAAGTCGTCTCTTCTAAAGGATCAGTTGGCTTTGTTACAAGTAGAAAAGTTAGCTGAACAGGAACACGCAATAACGGAACAACATGATAGTTCGGTGATGGAAGAAGTGATCGCATCGGAACAGATGTTGGATGAGTGTTCTAACAGAGAAGAACAAGAAGTTAAAGTTTCAGACATAATCACCAAAGATGAATGTATTCTGAAACATGAAACCAATGAAAATTGTATTGATAATATTTCAACGGTAGAGCACGATTACATATTGCAACAAGAATGTATATTGGCAAATGATGGTCAACGAAAAGAACAAAATCAAGACCAAGAAGAAGAACAAGAAGAGCAACACTTGATATCGGAAGAATCGTTTTCACGCGACGATTGTGTGCAGTATGTCAATATGTTGGTGAAAGCAGCCAATGTGACTCACAGAGAAGGTGAAGATCCGAGTGAAATAGAGCAACCTGACGAAGAGGACTTGAGAACAAATATCAAAGTCGAACAAGATCTTCAATGTCAAAGCGAAACAAGAAGAAGCAAACGTAAGCTAGTTCGAAAAAATACCGATTCAGCGCGAGACTCGGACGAGGAAAATTATTTTGAAAATTTAAATTTAAGTTCACGACTGAAGAAAGCTGAGGACTCTGACAAATCAGAGAGAATCTTTTTCATGTGTTACCTTTGCGACAAAGAATTTTTGTCGAAAAACGTTTTACGGGAACACATGCACTCTCATGAAGAAGTCCGAAAGGCGTTATCATTGCGAAAGTCCATCGAAAAACCAGAAAAAGATAGTGAAAGGTGCAGTCTCACGAAATCGCCTCCATCTGGTAAAAGATCGAACAAATGTCCCTATTGTGGTAAACAATACATATACATAATATCTTTTAGTAAGCATTTGAAGAAGCATGAGAAAGAGAAGGAAGAGGCAAAAGAGGAATTATTGCCGTTAGAAATTTCGTTTCATGAAGACGAACACAGTTTAGATTTCGAAGATTATGTGGATAAAGATAACTTGAATTCTGAGTATCAAAAAAGAGTCAGAAGAAGAGAAGGCGCGACTGCAGCAAAGTTGGGAAAGGAGGAAAGAATCGCGAAGCAGGCGGAGGAAGAAGAAATGGAAACCCCAGACGAAGACCATGAGGAGGTAGAAGGAACCAGAAGCGAGGAGAAAGTGAAACAAACAGAATATGAGACAAATAGCGAAGGTAAAGATCGAATATGTAATCGAAACGAAAATGGAGAACGAAAGAAACGTGAGGCGCGCATGGACACATCTTTTGCATGCGACAAGTGTTTAGAAAAATTCTCTACTAGACGGGGTTTACGAAAGCACACGATTTCGCATGTCGCTCTTAGATGCAGCGTGTGCGAAGAAGAATTTGACTCGTTGGAGAAACTGAGAAATCATCGAACGAAGCACGTCGTGGAAGGTGTATTGTCCGAACAAGATTTGGAAGCGGACACAGAATTTTCGATTGACAGGCATGTGGATGATTGCCAAGATTCCGAGGACAAACGTAAAGAGGAAGAGCAAGGAAATAACGATGTAGGAAGACGAAAAGGAAAGGATGGGGAACGAGAAAATGAGGCACAATTGTCGGAGAACGCGTTGAAGAGACACTCGAGAAACACGGAGATTCATTCGGAAGTCGAATTCAGTTGCAAGCTATGCTGTCAACGGTACACAAGAATGGATTTATTGCAGAGGCATATGGACCAGCATGAACGTGCGAAAAATTATAAATGTACAGAATGCAATAAAATGTTCGGTAATGAACTAACTTTACGAAATCATCTTATAGCTACGAATCACAAAACTTTTGTCCAAGGACAAGAGTATGATCCTAACAAGAGGATCAAACGAGTAGCTGCCAGAGCAGCTCAGAAGATAATCGATAAAATTAAGACGGAGGATGGTCTGGAAGATTACGAGGACGAGGATGAACGAGAGGCGAAGATAGTTGAACGAAACAGTACGGACGGAAATTATGGACGAAACAAACGCGATACTTCGACACAGAAGAAACTTAATTGCTCAAAGAAGGAGTTGGAATGCGCGAGTTGCAACAAAAAATGTAGCTCAAAACAGTCGTTGGCAAAGCACATGGATCAACATGCGAAGGAGGAGAAAATCATCAAGTCAGATAGGCAAAGACAAGGTCCTTTCGGAGATAAGAGGGACAAACAAAGAACTTGCGGGAATGAAGCAATCGAATCGAGCGAGATCAACAAGGATGATGATTACGATTCGGATTTCGAAAGTGGATTGGATTGGCCAATGGACAATCACGAATGCGTCAAGTGCAAAAAGCGGTACAGTACGAAGAAATCGTTGCTGCGTCATCAACTGTTGCATGAAGAACCGAATTTCGAGTGCGATATTTGCAATGTAAAGTTCTATCGCAAGGACAAGCTAAAAGCTCACTACGACAAGTGTTCAGAAAAGAACCCTGACCAGGTGAGAAAATGCAACATCTGTGGGGATAGTTTCGAAAATAATGAAATATTGCGAGAGCATAGATCAAAACATGTGACGGAAGGTATTCTTACCGAGGAAGACTTGAGGGATATCGAACCACGGCCAGAAGAGAAAAAGCCTGGAGAGAAAATCGGTAGGAAAAGGAGGACCGATATAGTAGGATTGGAATGTACCGAATGCAACAAACAGTACACCTCTAGGAAAGGGCTTCTTCGTCACATTCAGGTTCATGAAGGGAAGAAATATCTCTGCGACATATGCCCAAAAAAGTTTTACAGGAGAGAACATTTGAAGATACACGTGGCCAAGCACAACATGATCAAACCATATAAGTGTACACGCTGTACGAAACGTTTCATCAAAGAAGAACAACTAACTAATCACTTGTCGAAGCACGATCGAACTTTTAAGAAGAACAAGGAAACCGATAGCTCTAAGAGATTCCTCTGTGAAATTTGTTCGAAAAGTTTCACACAGTCGACAACGTTGATCGCGCACCTTAGGGCTCACAATGGTATTAAACCGTACGTTTGCGAAGTCTGTTCTCGACCATTCACAACTAACGCCTATCTGAAGATGCATATGAGAACTCATACCCAAGAACGACCATACATTTGTCAGTATTGTTCACGCGCATTTGCCAGAGCTGATACACTTGCCAATCACTTAACGTCACATACGGGCGAAGCAAAGTATCATTGCAAGTACTGTCCGAAAAACTTCCGTCGTCTGAAATCTCTGAAAGAGCACGTTTTCATTCACACTGGCCAGAGGCCGTACGCTTGTCCAACCTGCGATCGTCGTTTCAACAATAATGGAAGTCGATACGCTCATAGTAAGAGATGCAAACAAAATTTTGTTCAAAATCAGAATCGTGGTCAAACATTGGCGCAAGTACAGTCTGCTCAAAACCAGCAAAGGATACTGCACCAGCAAACCACACTTGGACAGACACAATTACTGAAAGCGCAGAACATTAAAACTATTACGATCACTAGACAACCAGACACTGTTACTGGTCAACATGTCACGCAGCATCAAGAAATAATAATGCCCCTAATCTTTCCTTTAACTGTTACTGTCGCCGATATCAGCGAAGAAGTTATATTACCGGAAGGAACTAAATTGTTTACAACCACCTAA
- Protein Sequence
- MDAVGINTSDSAQNEEESIVSTVEICRVCLLGNLVMRDLFLENEVSSLSTKAMSFANVKMVPGDGLPTRVCCLCADKLESAYEFKLQVEQADTVLREKFVTMNMKEELFFNEVEVHLEVGERNEDIERMHIESHYQNAVETLETMSNDEKSSLLKDQLALLQVEKLAEQEHAITEQHDSSVMEEVIASEQMLDECSNREEQEVKVSDIITKDECILKHETNENCIDNISTVEHDYILQQECILANDGQRKEQNQDQEEEQEEQHLISEESFSRDDCVQYVNMLVKAANVTHREGEDPSEIEQPDEEDLRTNIKVEQDLQCQSETRRSKRKLVRKNTDSARDSDEENYFENLNLSSRLKKAEDSDKSERIFFMCYLCDKEFLSKNVLREHMHSHEEVRKALSLRKSIEKPEKDSERCSLTKSPPSGKRSNKCPYCGKQYIYIISFSKHLKKHEKEKEEAKEELLPLEISFHEDEHSLDFEDYVDKDNLNSEYQKRVRRREGATAAKLGKEERIAKQAEEEEMETPDEDHEEVEGTRSEEKVKQTEYETNSEGKDRICNRNENGERKKREARMDTSFACDKCLEKFSTRRGLRKHTISHVALRCSVCEEEFDSLEKLRNHRTKHVVEGVLSEQDLEADTEFSIDRHVDDCQDSEDKRKEEEQGNNDVGRRKGKDGERENEAQLSENALKRHSRNTEIHSEVEFSCKLCCQRYTRMDLLQRHMDQHERAKNYKCTECNKMFGNELTLRNHLIATNHKTFVQGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYEDEDEREAKIVERNSTDGNYGRNKRDTSTQKKLNCSKKELECASCNKKCSSKQSLAKHMDQHAKEEKIIKSDRQRQGPFGDKRDKQRTCGNEAIESSEINKDDDYDSDFESGLDWPMDNHECVKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFVQNQNRGQTLAQVQSAQNQQRILHQQTTLGQTQLLKAQNIKTITITRQPDTVTGQHVTQHQEIIMPLIFPLTVTVADISEEVILPEGTKLFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00865472;
- 90% Identity
- -
- 80% Identity
- -