Basic Information

Insect: Lasioglossum zephyrum
Gene Symbol: -
Assembly: GCA_028455615.1
Location: CM052320.1:12680261-12684774[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.061 5.3 7.9 2.4 1 23 362 384 362 384 0.97

2 18 0.00084 0.073 13.7 0.9 2 23 422 443 421 443 0.98

3 18 0.00023 0.02 15.5 1.1 1 23 574 596 574 596 0.96

4 18 0.00049 0.043 14.5 0.7 2 23 600 621 599 621 0.96

5 18 0.00011 0.0098 16.5 2.8 1 23 697 719 697 719 0.97

6 18 0.00024 0.021 15.5 0.5 1 21 725 745 725 749 0.92

7 18 0.00032 0.028 15.0 4.6 2 23 829 850 828 850 0.96

8 18 0.00035 0.03 14.9 4.4 1 23 927 949 927 949 0.96

9 18 0.00024 0.021 15.5 0.9 1 20 954 973 954 975 0.94

10 18 0.046 4 8.3 0.5 2 23 986 1007 986 1007 0.97

11 18 3.2e-05 0.0028 18.2 0.6 2 23 1046 1067 1045 1067 0.97

12 18 2.9e-05 0.0025 18.4 1.6 1 23 1072 1094 1072 1094 0.95

13 18 5e-05 0.0043 17.6 2.0 1 23 1100 1122 1100 1122 0.98

14 18 5.1e-06 0.00044 20.7 0.4 1 23 1138 1160 1138 1160 0.95

15 18 4.1e-07 3.6e-05 24.1 0.6 1 23 1166 1188 1166 1188 0.99

16 18 4.5e-05 0.0039 17.7 0.2 1 23 1194 1216 1194 1216 0.97

17 18 0.00017 0.014 16.0 4.1 1 23 1222 1244 1222 1244 0.96

18 18 0.012 1 10.1 0.4 1 20 1250 1269 1250 1271 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.061	5.3	7.9	2.4	1	23	362	384	362	384	0.97
2	18	0.00084	0.073	13.7	0.9	2	23	422	443	421	443	0.98
3	18	0.00023	0.02	15.5	1.1	1	23	574	596	574	596	0.96
4	18	0.00049	0.043	14.5	0.7	2	23	600	621	599	621	0.96
5	18	0.00011	0.0098	16.5	2.8	1	23	697	719	697	719	0.97
6	18	0.00024	0.021	15.5	0.5	1	21	725	745	725	749	0.92
7	18	0.00032	0.028	15.0	4.6	2	23	829	850	828	850	0.96
8	18	0.00035	0.03	14.9	4.4	1	23	927	949	927	949	0.96
9	18	0.00024	0.021	15.5	0.9	1	20	954	973	954	975	0.94
10	18	0.046	4	8.3	0.5	2	23	986	1007	986	1007	0.97
11	18	3.2e-05	0.0028	18.2	0.6	2	23	1046	1067	1045	1067	0.97
12	18	2.9e-05	0.0025	18.4	1.6	1	23	1072	1094	1072	1094	0.95
13	18	5e-05	0.0043	17.6	2.0	1	23	1100	1122	1100	1122	0.98
14	18	5.1e-06	0.00044	20.7	0.4	1	23	1138	1160	1138	1160	0.95
15	18	4.1e-07	3.6e-05	24.1	0.6	1	23	1166	1188	1166	1188	0.99
16	18	4.5e-05	0.0039	17.7	0.2	1	23	1194	1216	1194	1216	0.97
17	18	0.00017	0.014	16.0	4.1	1	23	1222	1244	1222	1244	0.96
18	18	0.012	1	10.1	0.4	1	20	1250	1269	1250	1271	0.89

Sequence Information

Coding Sequence: ATGGACGCCGTAGGAATAAATACGTCCGATTCGGCGCAAAGTGAAGAGGAAAGCATCGTGTCGGCGGACGAAATATGTCGTGTTTGTCTTCTGGGTAATCTAGTGATGCGGGACTTGTTTCTAGAGAACGAGGTTGCTTCTCTGTCGGCGAAAGCGATGAGTTTTACAAACGTTAAGATGTTACCCGGCGATGGATTGCCAACGCGAGTATGTTGTTTGTGCGCGGATAAACTTGAATCCGCGTACGAATTCAAGCTACAGGTGGAACAGGCAGACACGGTTCTAAGAGAGAAGTTTGTCACGATGAACATGAAGGAGGAATTATTTTTTAACGAAGTCGAAGTGGACCTGGATGCAGGAGAGAGAAACGAGGACATAGAACGGATGCGCATAGAGAATTATCAGAGCACGGTAGAAACGTTGGAGACAATGTCTGGAGAAGAAAAGTCGTCCCTCTTGAAGGATCGGTTGGCTCTGTTGCAAGTGAGGAAGTTGGCCGAACAGGAACAGACGATAACCGAACAGCACGATAGTACGGTGATGGAAGAAGGGATCGTGTCGGAACAGATGTTGGACGAGTGTTCAAACAGAGAGGAAGATAACGACAAGGCTGTGGACATTATAACCAAGGACGAAATAATCCTGAAACACGAGAATATATCGACGGTAGAGCACGATTACATATTGCAACGAGACTGCATACTGGAAAACGATAGCTCGCGGAAAGAAGTAACAGGGGAACAAGAGGAAGAACGAGAAGAGCAGCAGATGATAACGGAAGAATCGTTTTCGCGCGAAGATTGCGTACAGTATGTAAATATGTTGGTGAAAGCAGCTGACGTGACTCGCGGAGAAGACGAAGGTCCGATGGAAGTCGAGCAGCCCAATGAAAAGGATTCGAGAACAAATGCAAAGCTGAAAGAAGATTCTCAGTGTCAAAGCGAGACGAGAAGAAGCAAACGTAAGCTACAAAGTAGCCCCGACACCACGCGAGACTCCGACGAGGAGAATTATTTTGAAAACTTAAATCTAAGTTCGCGGCTGAAGAAAGCCGAGGACTCCGATAAATCGGACAAAATCTTTTTCATGTGTTACCTTTGCGACAAGGAGTTTTTATCGAAAAACGTTTTGCGGGAGCATATGCATTCTCACGAGGAAGTCCGAGAGGTGTTGTCGTTGCGAAAATCCGTGGAGAAGCCGGAGAAAGACGTCGAGAGATGCAATAGTATCACGAAAACACCTCCATCTGGTAAAAGATCGAACAAATGCCCGTACTGCGGTAAACAGTATATATACATAATATCGTTCAGCAAACATTTGAAGAAGCACGAGAAAGAGAAAGAAGATGCGAAAGAGGAATCGTTGCCGTTGGAAATTTCGTTTCACGAAGACGAGCACAGTTTGGATTTCGAGGATTTCGCGGACAAAGATAACATGAATTCGGAGTACCGAAAAAAAGTCAGGAAAAGAGAAAGCGTGGCTGTAACAAAATCGGATAAAAAGGAATCAATGACAGAGCAGAGGGAGGAGAAGCAAGAGGAAGGGGAGGAAGAAGAAGCCGTAAATGAAGAAAAAGAGGAGACCGAAGGAACCGGATGCGAGGAGAATGCAAAACGGAAAGAGAAAGAGACAAGCAGCGAAGGTAAAGAAAAGACCTCTAATCGAAACGAAAATGGGGAACGAAAGAAACAAGAAACACGCGTGGATTCGGATTCGGATTTCGCATGCAACAAGTGTCAAGTGAAATTCCCTACTAGACGAAGTTTGCGAAAACACTTGATTTTGCATACTACTCTTAAATGTAGCGTGTGCGAGAAAGAGTTCGACTCGTTGGAGAAGCTGAGAAATCATCGGGCAAAGCATGTCGTTGAAGGTGTGTTGTCTGAACAAGATGTGGAAATGTGTATGGAGTTTACGATTGACAAGGAAGAGGACACAGCGGAAGAACAGGTACAAGAATCTAACGAAGGAAGAAGACGGAAAGAAAAGGAGGGGGAACGGGAACGAGAAGGTGAACCCCAGACACAATTGTCGGAGAATGTGTTGAAGAGAAGCGCAAGAAAAACGGAGATGAATTCGGTGGTCGAGTTCAGTTGCAAGGTATGCCATCAGCGATACACGAGAATAGATTTGTTGCAGAGGCATATGGAGCAACACGAACGTGTTAAAAATTACAAATGTACAGAATGCAATAAAACGTTCGGTAATGAACTGACTTTACGAAATCATCTCATAGCTACGAATCACAAAACTTTTGTCAGAGGACAGGAGTACGATCCAAACAAACGGATCAAACGAGTAGCTGCGAGAGCAGCTCAGAAAATAATTGATAAAATCAAGACGGAAGACGGCCTGGAAGATTACGAAGACGAGGATGAACGGGATGAGATGATAGCCGAGCGGAACTTCACGGACGGAAATTACGGACGGAACAAGCGTGAGATGTTGTTACCGAAGAAACACAATTTCTCGAAAAAGGAGCTGGAATGCACGACCTGTAACAAAAAGTGTAGCTCGAAACAGTCGCTAACGAAACACATGGAGCAACACGTGAAGGAGGAGAAAACCGGCAAGGTGGATAAAGAGAGGGACAGAGAGAAGGAGAAGGACCGAGATAGAGAGAGGGACAGAGAAAGGCAAAGGCAGAGCACCTTCGGGGACAAGAGAGAACGACAGAGGAGCTGCGTGAACAACGACGCGGTTGATTCGAGCGACGTCAACAAGGAGGATGACTACGATTCAGATTTCGAAAGCGGGTTGGATTGGCCGATGGACAATCACGAATGCGTCAAGTGCAAGAAACGATACAGCACGAAGAAATCGTTGCTGCGCCATCAACTTTTGCACGAGGAACCGAACTTCGAGTGCGACATTTGCAACTTGAAATTCTATCGTAAAGACAAGTTGAAAGCTCACTACGACAAGTGCTCGGAGAAGAACCCCGACCAGGTGAGAAAATGCAACATCTGCGGGGACAGTTTCGAGAATAACGAGATACTGCGAGAGCATAGATCGAAACACGTGACAGAAGGGATTCTCACCGAGGAGGACCTGAGGGACATCGAGCCGCGGCCAGAAGAGAAGAAGGCGGGAGAGAAGATCGGTAGGAAAAGAAGGACCGATATAGTCGGATTGGAGTGCACCGAATGCAACAAACAGTACACCTCTAGGAAAGGGCTGCTGCGTCACATTCAGGTTCACGAAGGAAAGAAGTACCTTTGCGACATATGCCCGAAGAAGTTCTACAGAAGAGAACATTTGAAGATACACGTGGCCAAGCACAACATGATCAAACCGTACAAGTGTCCGCGCTGTACGAAACGTTTCATCAAAGAAGAACAACTGACCACTCATTTGTCGAAGCACGACCGAACATTTAAGAAGAACAAAGAAACCGATAGCGCCAAAAGATTTCtctgcgagatttgctcgaagagtttcacccaatcgacgacgttgatcgcgcatctcagggctcacaacggcattaaaccgtacgtttgcgaggtctgttctcgaccgttcaccacgaacgcctatctgaagatgcacatgagaacgcacacccaagaacggccgtacatatgTCAGTATTGTTCGCGCGCTTTCGCCAGGGCCGACACGCTCGCCAATCACTTGACATCGCACACCGGCGAGGCTAAGTATCACTGCAAGTATTGTCCGAAGAACTTCCGTCGCCTGAAATCCCTGAAGGAGCACGTCTTCATTCACACGGGTCAACGACCGTACGCTTGCCCGACTTGCGACCGCCGTTTCAACAACAACGGAAGTCGCTACGCCCATAGCAAGAGATGCAAGCAAAACTTCATGCAAAACCAGAATCGTGCCCAAACGTTGGCGCAAGTACAAGTTTCCCAGAACCAGCAAAGAATATTGCATCAGCAGAGCACTCTTGCACAGACGCAACTGTTGAAAGCGCAGAACATTAAAACTATTACGATCACCAGACAACCAGACGTCGTTGTTCCTCAACACGTCGCGCAGCATCAAGAAATAATAATGCCCCTGATCTTTCCTTTAACCGTCACAGTCGCCGATATCAGCGAAGAAGTTATAATACCGGAAGGAACCAAATTGTTTACGACCACTTAA
Protein Sequence: MDAVGINTSDSAQSEEESIVSADEICRVCLLGNLVMRDLFLENEVASLSAKAMSFTNVKMLPGDGLPTRVCCLCADKLESAYEFKLQVEQADTVLREKFVTMNMKEELFFNEVEVDLDAGERNEDIERMRIENYQSTVETLETMSGEEKSSLLKDRLALLQVRKLAEQEQTITEQHDSTVMEEGIVSEQMLDECSNREEDNDKAVDIITKDEIILKHENISTVEHDYILQRDCILENDSSRKEVTGEQEEEREEQQMITEESFSREDCVQYVNMLVKAADVTRGEDEGPMEVEQPNEKDSRTNAKLKEDSQCQSETRRSKRKLQSSPDTTRDSDEENYFENLNLSSRLKKAEDSDKSDKIFFMCYLCDKEFLSKNVLREHMHSHEEVREVLSLRKSVEKPEKDVERCNSITKTPPSGKRSNKCPYCGKQYIYIISFSKHLKKHEKEKEDAKEESLPLEISFHEDEHSLDFEDFADKDNMNSEYRKKVRKRESVAVTKSDKKESMTEQREEKQEEGEEEEAVNEEKEETEGTGCEENAKRKEKETSSEGKEKTSNRNENGERKKQETRVDSDSDFACNKCQVKFPTRRSLRKHLILHTTLKCSVCEKEFDSLEKLRNHRAKHVVEGVLSEQDVEMCMEFTIDKEEDTAEEQVQESNEGRRRKEKEGEREREGEPQTQLSENVLKRSARKTEMNSVVEFSCKVCHQRYTRIDLLQRHMEQHERVKNYKCTECNKTFGNELTLRNHLIATNHKTFVRGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYEDEDERDEMIAERNFTDGNYGRNKREMLLPKKHNFSKKELECTTCNKKCSSKQSLTKHMEQHVKEEKTGKVDKERDREKEKDRDRERDRERQRQSTFGDKRERQRSCVNNDAVDSSDVNKEDDYDSDFESGLDWPMDNHECVKCKKRYSTKKSLLRHQLLHEEPNFECDICNLKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKAGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCTKRFIKEEQLTTHLSKHDRTFKKNKETDSAKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFMQNQNRAQTLAQVQVSQNQQRILHQQSTLAQTQLLKAQNIKTITITRQPDVVVPQHVAQHQEIIMPLIFPLTVTVADISEEVIIPEGTKLFTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00865472;
90% Identity: iTF_00865472;
80% Identity: -