Basic Information

Insect: Agapostemon virescens
Gene Symbol: -
Assembly: GCA_028453745.1
Location: CM052087.1:14841396-14846086[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.058 8.1 7.8 2.4 1 23 395 417 395 417 0.97

2 18 0.0008 0.11 13.7 0.9 2 23 454 475 453 475 0.98

3 18 0.00069 0.095 13.9 1.3 1 23 613 635 613 635 0.96

4 18 0.0032 0.44 11.8 1.9 2 23 639 660 638 660 0.96

5 18 0.00022 0.031 15.5 1.8 1 23 743 765 743 765 0.97

6 18 0.00044 0.061 14.5 0.4 1 21 771 791 771 795 0.92

7 18 0.0019 0.26 12.5 2.4 2 23 875 896 874 896 0.95

8 18 0.00023 0.032 15.4 4.2 1 23 962 984 962 984 0.96

9 18 0.0003 0.041 15.1 0.7 1 20 989 1008 989 1010 0.94

10 18 0.044 6.1 8.2 0.5 2 23 1021 1042 1021 1042 0.97

11 18 3.2e-05 0.0044 18.1 0.5 2 23 1081 1102 1080 1102 0.97

12 18 2.7e-05 0.0038 18.3 1.6 1 23 1107 1129 1107 1129 0.95

13 18 0.00015 0.021 16.0 2.9 1 23 1135 1157 1135 1157 0.98

14 18 4.8e-06 0.00067 20.7 0.4 1 23 1173 1195 1173 1195 0.95

15 18 3.9e-07 5.5e-05 24.1 0.6 1 23 1201 1223 1201 1223 0.99

16 18 4.3e-05 0.0059 17.7 0.2 1 23 1229 1251 1229 1251 0.97

17 18 0.00016 0.022 15.9 4.1 1 23 1257 1279 1257 1279 0.96

18 18 0.011 1.6 10.1 0.4 1 20 1285 1304 1285 1306 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.058	8.1	7.8	2.4	1	23	395	417	395	417	0.97
2	18	0.0008	0.11	13.7	0.9	2	23	454	475	453	475	0.98
3	18	0.00069	0.095	13.9	1.3	1	23	613	635	613	635	0.96
4	18	0.0032	0.44	11.8	1.9	2	23	639	660	638	660	0.96
5	18	0.00022	0.031	15.5	1.8	1	23	743	765	743	765	0.97
6	18	0.00044	0.061	14.5	0.4	1	21	771	791	771	795	0.92
7	18	0.0019	0.26	12.5	2.4	2	23	875	896	874	896	0.95
8	18	0.00023	0.032	15.4	4.2	1	23	962	984	962	984	0.96
9	18	0.0003	0.041	15.1	0.7	1	20	989	1008	989	1010	0.94
10	18	0.044	6.1	8.2	0.5	2	23	1021	1042	1021	1042	0.97
11	18	3.2e-05	0.0044	18.1	0.5	2	23	1081	1102	1080	1102	0.97
12	18	2.7e-05	0.0038	18.3	1.6	1	23	1107	1129	1107	1129	0.95
13	18	0.00015	0.021	16.0	2.9	1	23	1135	1157	1135	1157	0.98
14	18	4.8e-06	0.00067	20.7	0.4	1	23	1173	1195	1173	1195	0.95
15	18	3.9e-07	5.5e-05	24.1	0.6	1	23	1201	1223	1201	1223	0.99
16	18	4.3e-05	0.0059	17.7	0.2	1	23	1229	1251	1229	1251	0.97
17	18	0.00016	0.022	15.9	4.1	1	23	1257	1279	1257	1279	0.96
18	18	0.011	1.6	10.1	0.4	1	20	1285	1304	1285	1306	0.89

Sequence Information

Coding Sequence: ATGGACGCCGTGGGAATAAATACGTCCGATTCGGCACAAAATGAGGAGGAAAGCATTGTGTCGACCGTGGAGATATGTCGTGTTTGTCTTCTGGGTAATCTAGTGATGCGGGACTTGTTTTTAGAGAACGAGGTTTCTTCTCTATCGACAAAAGCGATGAGTTTTGCAAACGTTAAGATGTTACCCGGCGATGGATTGCCAACGCGCGTATGTTGCGTGTGTGCGGATAAACTTGAATCCGCGTACGAATTTAAGCTACAGGTGGAACAAGCTGACAGTGTTCTAAGACAAAAGTTCATCACCATGAATATGAAGGAAGAATTATTTTTTAACGAAGTTGAAGTGCATCTGGATGTAGGAGAAAGAAACGAAGACATAGAACGAATGCATATAGAAAATCATTATCAAAATGCGGTAGAAACATTGGAGACAATGTCCAGAGAAGAAAAGTCGTCCCTTCTAAAGGATCAGTTGGCTCTGTTGCAAGTAGGAAAATTGGCTGAACAGGAACAGACGATAACCGAACATCACGATAGTTCGGCGATGGAAGAAGCGATCGTGTCGGAACGGATATTGAACGAGTGTTCCAACAGAGAGGAAGAAAACGGTAAGGCTGTGGATATTATGAGTAAGAACGAAATAATCCTGAAGCACGAGACCAGTGAAAATTGTATCGAAAATATTTCAACGGTAGAGCACGATTACATATTACAACAAGAATGTATACTGGCAAACGATAGTCGACGAAAAGAAGGATCAGAGGAACAAGAAGAAGAACGTGAAGAGCAGCAGTTGATATCGGAAGAATCGTTTTCGCGCGACGATTGCGTACAGTATGTAAATATGTTGGTGAAAGCGGCCGACGTGACTCACAGAGAAGTCAGAGAACACAGAGAAGACGAAGAGGACAGGGAAGACGGAGAAGACGAAGACAACAGAGAAGATAGAGAAGACGAAGATCCGAGCGAAGTTGAGCAACCCGATGAAGAGGGTTCGAGTACAAATGCAAATATGGAACAAGATTCTCAGTGTCAGAGCGAGACGAGAAGAAGCAAACGTAAGTTAGTTCGAAGAAACACCGATCTCATGCGAGATTCCGACGAGGAGAATTATTTTGAAAACTTGAATCTAAGTTCACGACTGAAGAAAGCCGAGGACTCCGCTAAAACGGAAAGAATCTTTTTCATGTGTTACCTTTGCGACAAAGAGTTTCTATCGAAAAACGTTTTAAGAGAGCATATGCACTCTCATGAGGAAGTTCGTAAGGTACTGTCATTGAGGAAGTCTGTGGAAAAGCCAGAGAAAGACATTGAAAGATGCACTGTCGCGAAATTACCTCCATCTGGTAAAAGATCGAATAAATGTCCTTACTGCGGTAAACAATATATTTATATCATATCGTTTAGCAAACATTTGAAGAAGCACGAAAAAGAGAAAGAAGAGGCGAAAGAGGAATCGTTACCATTGGAAATTTCGTTTCACGAGGACGAGCACAGTTTGGATCTGGAGGATTTTGCGGATAAAGATAACTTGAATGCCGAGTACCGGAAAAGAGTCAGGAGAAGAGAAAGCGTGGCTGCAGCAAAATCGGAGAAAGAAGAAAGAATCGTGGAGCGGACGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAAGAGGAGGAAGAAATCGTAAACGAAGAAAACGAGGAGCCCGTGGAAAGTGAATGCGAGGAGAAAACGAAACGGAAAGAGAAAGAGCGAAGCAGCGAAGATAGAGAAAGGATCTGTAACCGAAACGAAAATGGGGAACAAAAGAAACGCGAAATGCACGTGGAATCGTCTTTCGCGTGCGACAAATGTCTAGAAAAATTCTCAACTAGACGAGGTTTGCGGAAACACACGATTTCGCATGCCGCTCTCCGATGCAGCGTGTGCGAAGAAGAGTTCTGCTCGTTGGAGAAGCTGAGAAACCATCGAGCAAAGCATGTATTTGACGGTGTATTGTCCGAACCAGATCTGGAAACAGGTACGGAATGTTCGGTTGACAGGAACAACGACGGCTATCGGGATGTCGCGGACAAACAGAAAGAGGAGGAACAAGAAAATCACGACGGAGGAAGGCGGAAAGAAAAGGATGGGGAACGGGAACGGGAACGAGAATTCGAGGCACAATTGTCGGAGAACGCGTTGAAGAGAATTGCAAGAAACACGGAGATACATTCGGAGGTCGAGTTTAGTTGCAAGGTATGCTATCAGCGATACACAAGAATGGATTTGTTGCAGAGGCATATGGAGCAACACGAGCGTGTTAAACATTACAAATGTACAGAATGCAATAAAATGTTCGGTAATGAACTGACTTTACGAAATCATCTAATAGCTACGAATCACAAAACTTTTGTCCAAGGACAGGAATACGATCCAAACAAACGGATCAAACGTGTGGCTGCGAGAGCAGCTCAGAAAATAATCGATAAAATTAAGACGGAGGATGGTCTGGAAGATTACGAGGACGAGGATGAACGGGAGGAGAAGATGGTCGAGCGGAACATCACGGACGGAAGCTACGGACGGAACAAGCGTGACATTTTGTCACCGAAGAAGCACAATTGTTCGAAAAAGGAGTTGGAATGCGCGAGCTGTAACAAAAAGTGTAGCTCGAAACAGTCGCTGGCGAAGCACATGGAACAGCACGTGAAGGAGGAGAAAAGTGTCAAGTTGGAGAGGGAGAGAGAGAGGCAAAGGGAAAGGCAAAGGCAAAGCGTCTTCGGGGATAAGAGAGAACGGCAGAGGAGCTGTGCGAACGATGCGATGGAATCGAACGAGATCAATAAGGACGACGACTACGATTCGGATTTCGAAAGCGGGCTAGATTGGCCGATGGACAATCACGAATGCGCGAAATGCAAGAAACGGTATAGCACGAAGAAATCGTTGCTGCGCCATCAACTTTTGCACGAAGAACCAAACTTCGAATGCGACATTTGTAATGTAAAATTCTATCGTAAGGACAAGCTGAAAGCTCACTATGACAAGTGCTCGGAAAAGAACCCCGACCAGGTGAGAAAATGCAACATCTGCGGAGACAGTTTCGAGAATAACGAGATATTGCGAGAGCATAGATCGAAACACGTGACAGAAGGGATTCTCACCGAGGAGGACTTGAGGGATATCGAGCCGCGGCCGGAAGAGAAGAAGGCAGGAGAGAAAACCGGTAGGAAAAGAAGGACCGATATAGTGGGATTGGTGTGCACCGAATGCAACAAACAGTACACCTCTAGAAAGGGGTTGCTGCGTCACATTCAGGTTCACGAAGGGAAGAAGTACCTTTGCGACATATGCCCGAAAAAGTTTTACAGAAGGGAACATTTGAAGATACACGTGGCCAAGCACAACATGATCAAACCGTACAAGTGTACGCGCTGTACGAAACGTTTCATCAAAGAAGAACAGCTGACCAATCATTTGTCGAAGCACGATCGAACTTTTAAAAAGAACAAAGAAACCGATAGCTCCAAGAGATTTCTTTGCGAGATTTGCTCGAAAAGTTTCACTCAATCGACGACGTTGATTGCGCATCTCAGAGCTCACAACGGCATCAAACCATACGTTTGCGAGGTCTGCTCTCGACCGTTCACCACAAACGCCTATCTAAAGATGCACATGAGGACGCACACTCAAGAACGTCCATACATTTGTCAGTACTGTTCGCGCGCTTTCGCCAGAGCCGACACGCTCGCCAATCACTTGACATCGCACACCGGTGAGGCCAAGTATCATTGCAAATATTGCCCGAAAAACTTCCGCCGCCTGAAGTCGCTGAAAGAGCACGTTTTCATCCACACCGGTCAGAGACCGTACGCTTGCCCGACTTGCGACCGTCGTTTCAACAACAACGGAAGTCGCTACGCCCACAGTAAGAGATGCAAACAAAATTTCGTTCAAAATCAGAATCGTGGTCAAACGTTGACGCAAGTACAATCTGCTCAGAATCATCAAAGGATATTGCATCAGCAAACCGCTCTTGGACAGACGCAACTGCTCAAAGCGCAGAACATTAAAACTATTACGATCACCAGACAACCAGATACCGTTGCTGCCCAACACGTTGCGCAGCATCAAGAAATAATAATGCCCCTGATTTTTCCTTTAACCGTCACGGTTGCCGATATCAGCGAAGAAGTTATATTACCGGAAGGAACCAAATTGTTTACGACCACCTAA
Protein Sequence: MDAVGINTSDSAQNEEESIVSTVEICRVCLLGNLVMRDLFLENEVSSLSTKAMSFANVKMLPGDGLPTRVCCVCADKLESAYEFKLQVEQADSVLRQKFITMNMKEELFFNEVEVHLDVGERNEDIERMHIENHYQNAVETLETMSREEKSSLLKDQLALLQVGKLAEQEQTITEHHDSSAMEEAIVSERILNECSNREEENGKAVDIMSKNEIILKHETSENCIENISTVEHDYILQQECILANDSRRKEGSEEQEEEREEQQLISEESFSRDDCVQYVNMLVKAADVTHREVREHREDEEDREDGEDEDNREDREDEDPSEVEQPDEEGSSTNANMEQDSQCQSETRRSKRKLVRRNTDLMRDSDEENYFENLNLSSRLKKAEDSAKTERIFFMCYLCDKEFLSKNVLREHMHSHEEVRKVLSLRKSVEKPEKDIERCTVAKLPPSGKRSNKCPYCGKQYIYIISFSKHLKKHEKEKEEAKEESLPLEISFHEDEHSLDLEDFADKDNLNAEYRKRVRRRESVAAAKSEKEERIVERTEEEEEEQQQQQQQQQEEEEEIVNEENEEPVESECEEKTKRKEKERSSEDRERICNRNENGEQKKREMHVESSFACDKCLEKFSTRRGLRKHTISHAALRCSVCEEEFCSLEKLRNHRAKHVFDGVLSEPDLETGTECSVDRNNDGYRDVADKQKEEEQENHDGGRRKEKDGEREREREFEAQLSENALKRIARNTEIHSEVEFSCKVCYQRYTRMDLLQRHMEQHERVKHYKCTECNKMFGNELTLRNHLIATNHKTFVQGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYEDEDEREEKMVERNITDGSYGRNKRDILSPKKHNCSKKELECASCNKKCSSKQSLAKHMEQHVKEEKSVKLERERERQRERQRQSVFGDKRERQRSCANDAMESNEINKDDDYDSDFESGLDWPMDNHECAKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKAGEKTGRKRRTDIVGLVCTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFVQNQNRGQTLTQVQSAQNHQRILHQQTALGQTQLLKAQNIKTITITRQPDTVAAQHVAQHQEIIMPLIFPLTVTVADISEEVILPEGTKLFTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00865472;
90% Identity: -
80% Identity: -