Basic Information

Insect: Lasioglossum marginatum
Gene Symbol: -
Assembly: GCA_028455795.1
Location: CM052245.1:11126703-11131343[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.058 5.5 7.9 2.4 1 23 367 389 367 389 0.97

2 18 0.0008 0.076 13.7 0.9 2 23 427 448 426 448 0.98

3 18 0.0035 0.34 11.7 1.0 1 23 574 596 574 596 0.93

4 18 0.0027 0.25 12.1 0.4 2 23 600 621 599 621 0.96

5 18 0.00011 0.011 16.4 3.3 1 23 710 732 710 732 0.97

6 18 0.00023 0.022 15.4 0.5 1 21 738 758 738 762 0.92

7 18 0.00087 0.083 13.6 4.4 2 23 842 863 841 863 0.96

8 18 0.00033 0.031 14.9 4.4 1 23 944 966 944 966 0.96

9 18 0.0003 0.028 15.1 0.7 1 20 971 990 971 992 0.94

10 18 0.044 4.2 8.2 0.5 2 23 1003 1024 1003 1024 0.97

11 18 3e-05 0.0028 18.2 0.6 2 23 1063 1084 1062 1084 0.97

12 18 2.7e-05 0.0026 18.3 1.6 1 23 1089 1111 1089 1111 0.95

13 18 0.00015 0.015 16.0 2.9 1 23 1117 1139 1117 1139 0.98

14 18 4.8e-06 0.00046 20.7 0.4 1 23 1155 1177 1155 1177 0.95

15 18 3.9e-07 3.7e-05 24.1 0.6 1 23 1183 1205 1183 1205 0.99

16 18 4.3e-05 0.004 17.7 0.2 1 23 1211 1233 1211 1233 0.97

17 18 0.00016 0.015 15.9 4.1 1 23 1239 1261 1239 1261 0.96

18 18 0.011 1.1 10.1 0.4 1 20 1267 1286 1267 1288 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.058	5.5	7.9	2.4	1	23	367	389	367	389	0.97
2	18	0.0008	0.076	13.7	0.9	2	23	427	448	426	448	0.98
3	18	0.0035	0.34	11.7	1.0	1	23	574	596	574	596	0.93
4	18	0.0027	0.25	12.1	0.4	2	23	600	621	599	621	0.96
5	18	0.00011	0.011	16.4	3.3	1	23	710	732	710	732	0.97
6	18	0.00023	0.022	15.4	0.5	1	21	738	758	738	762	0.92
7	18	0.00087	0.083	13.6	4.4	2	23	842	863	841	863	0.96
8	18	0.00033	0.031	14.9	4.4	1	23	944	966	944	966	0.96
9	18	0.0003	0.028	15.1	0.7	1	20	971	990	971	992	0.94
10	18	0.044	4.2	8.2	0.5	2	23	1003	1024	1003	1024	0.97
11	18	3e-05	0.0028	18.2	0.6	2	23	1063	1084	1062	1084	0.97
12	18	2.7e-05	0.0026	18.3	1.6	1	23	1089	1111	1089	1111	0.95
13	18	0.00015	0.015	16.0	2.9	1	23	1117	1139	1117	1139	0.98
14	18	4.8e-06	0.00046	20.7	0.4	1	23	1155	1177	1155	1177	0.95
15	18	3.9e-07	3.7e-05	24.1	0.6	1	23	1183	1205	1183	1205	0.99
16	18	4.3e-05	0.004	17.7	0.2	1	23	1211	1233	1211	1233	0.97
17	18	0.00016	0.015	15.9	4.1	1	23	1239	1261	1239	1261	0.96
18	18	0.011	1.1	10.1	0.4	1	20	1267	1286	1267	1288	0.89

Sequence Information

Coding Sequence: ATGGACGCCGTAGGAATAAATACGTCCGATTCGGCGCAAAATGAGGAGGAAAGCATCGTGTCGACGGTGGAAATATGTCGTGTTTGTCTTCTGGGTAATCTAGTGATGCGGGACTTGTTTCTAGAGAACGAGGTTTCTTCTCTATCGGCGAAAGCGATGAGTTTTACAAACGTTAAGATGTTACCCGGCGATGGATTGCCAACGCGAGTATGTTGTATGTGCGCGGATAAACTTGAATCCGCGTACGAATTCAAGCTACAGGTGGAACAAGCAGACACGGTTCTAAGAGAGAAATTTGTCACGATGAACATGAAGGAGGAATTATTTTTGAACGAAGTCGAAGTACACCTGGAGGTAGGAGAGAGAAACGAGGACATAGAACGGATGCACATAGAGAATCATTATCAAAACACAGTAGAAACATTGGAGACAATGTCCGGAGATGAAAAGTCATCCCTTTTGAAGGATCAGTTGGCTTTGTTGCAAGTGGGGAAGTTGGCTGAACAGGAACAGACAATAACCGAACAGCACAATAGTACGGTGATGGAAGAAGGGATCATGTCGGAACAGATGTTGGACGAGTGTTCCAATAGAGATGAAGATAACGGTAAGGCTGTGGACATTATAACCAAGGACGAAATAATCCTGAAACACGAAAATATATCGACGGTAGAGCACGATTACATATTGCAACAAGACTGCATACTGGAAAACAATAGTCAACGAAAAGAAGGAACAGGGGAAGAAGAGGAAGAACGAGAAGAGCAGCAGTTGATATCGGAAGAATCGTTTTCACGGGACGATTGCGTACAGTATGTGAATATGTTGGTGAAAGCAGCTGACGTGACTCATAGAGAAGACGGAGAAGACGAAGATCCGAGCGAAATCGAGCAGTCTCATGAAGAGTGTTCGAGAACAAATGCAAAGCTGGAAGAAGAGTCTCAGTGTCAAAGCGAGACAAGAAGAAGCAAACGTAAGCAACTTGAAAGTAGCACCGATCCCATGCGAGACTCCGACGAGGAGAATTATTTTGAAAACTTAAATCTAAGTTCGCGACTGAAGAAAGCCGAGGACTCCAATAAATCGGAAAGAATCTTTTTCATGTGTTACCTTTGCGACAAAGAGTTTTTATCAAAAAACGTTTTGCGGGAGCATATGCATTCTCACGAGGAAGTCCGAGAGGTATTGTCGTTGCGAAAATCCGTGGAGAAGCCAGAGAAAGACGTCGAAAAATGCAATAATCTCACGAAATTACCCCCATCTGGTAAAAGATCGAACAAATGCCCGTACTGCGGTAAACAATATATATACATAATATCGTTCAGCAAACATTTGAAGAAGCACGAGAAAGAGAAAGAAGAGGCGAAAGAGGAATCGTTGCCGTTGGAAATTTCATTTCACGAAGACGAGCACAGTTTGGATTTCGAAGATTTTGCGGATAAAGATAACATGAATTCGGAGTACCGAAAAAGAGTCAGGAAAAGAGTAGGCGTGGTTGTAACAAAATCGGAGAAAGAGGAACCAATGCAGACGGAGGAAGAGCAACAGGAAGGGGAGGAAGAAGCCGTAGACGAAGAAAAAGAGGACTCCGAGGGAACCGGATGCGAGGAGAAAGCGAAACGGAAAGAGAAAGAGACAAGCAGCGAGGATAAAGAAAGGATCTGTAATCGAAACGAAAATGGGGAACGAAAGAAACGCGAAGCACGCGTGGAATCGTCTTTCGCGTGCGACAAGTGTCTAGAAAAATTCTCTACTAGACGAGGTTTGCGGAAACACTCGATTTTGCATGCTGCTCTCAGATGTAGCGTGTGCGAAGAAGAATTCGACTCGTTGGAGAAGCTGAGGAACCATCGGGCGAAGCATGTCGTTGAAGGTGTACTGTCCGAACAAGATCTGGAAACGGGTACTGAGTTTCCACTTGATAGGGACAAGGATGGCTGTCGGGTTGTTGTGGACAAACGGAAAGAAGAAGAACAGGTACAAGGACCTCACGAAGGAAGAAGGCGGAAAGAGAAGGAGTGGGAACGGGTACGGGAACGAGAACGAGAAGGAGAATCCCAGACACAATTGTCGGAGAACGTGTTGAAGAGAAGCGCAAGAAACACGGAGATGCATTCGGAGGTCGAGTTCAGTTGTAAGGTATGCCATCAGCGATACACAAGAATGGATTTGTTGCAAAGGCATATGGAGCAACACGAGCGTGTTAAAAATTACAAATGTACAGAATGCAATAAAACGTTCGGTAATGAACTGACTTTACGAAATCATCTTATAGCTACGAATCACAAAACTTTTGTCCGAGGACAGGAGTACGATCCGAACAAACGGATCAAACGTGTGGCTGCAAGAGCAGCTCAGAAAATAATTGATAAAATTAAGACGGAAGACGGCCTGGAAGATTACGAGGACGAAGATGAACGGGAGGAGAAGATAGCCGAGCGGAACTCCACGGACGGAAATTACGGACGGAACAAGCGTGAGATTTTGTCACCAAAGAAACACAATTACTCGAAAAAAGAGCTGGAATGCACAAGCTGTAACAAAAAGTGTAGCTCGAAACAGTCGCTAACGAAACACATGGAACAACACGTGAAGCAGGAGAAAACTGTCAAGGTGGAGAGGGAGCGGGAGAGAGAAAGAGAGAAAGAACGAGAGAGGGAGAGGGAGAGGGAGAAAGAAAGGCAAAGACAAAGGCAGGGCACCTTCGGGGACAAGAGAGAACGACAGAGGAGCTGCGCGAACAACGACGCGGTTGAATTGAGCGAGGTCAACAAGGACGATGACTACGATTCAGATTTCGAAAGCGGATTGGATTGGCCGATGGACAATCACGAATGCGTAAAGTGCAAGAAACGATACAGCACGAAGAAATCGTTGCTGCGCCATCAACTTTTGCACGAGGAACCGAACTTCGAATGCGACATTTGCAACGTGAAATTCTATCGTAAAGACAAATTGAAAGCTCACTACGACAAGTGCTCGGAAAAGAACCCCGACCAGGTGAGAAAATGCAACATCTGCGGGGACAGTTTCGAAAATAACGAGATATTGCGAGAGCATAGATCGAAACATGTGACAGAAGGCATTCTCACCGAGGAGGACCTGAGGGATATCGAGCCGCGGCCAGAAGAGAAGAAGCCGGGAGAGAAGATCGGTAGGAAAAGAAGGACCGATATAGTGGGATTGGAGTGTACCGAATGCAACAAACAGTATACCTCTAGGAAAGGACTACTGCGTCACATTCAGGTTCACGAAGGGAAGAAGTACCTTTGCGACATATGCCCGAAAAAGTTCTACAGAAGAGAACATTTGAAGATACACGTGGCCAAGCACAACATGATCAAACCGTACAAGTGTACGCGCTGTACGAAACGTTTCATCAAAGAAGAACAACTGACCAATCATTTGTCGAAACACGATCGAACATTTAAGAAGAATAAAGAAACTGATAGCTCGAAAAGATTTCTTTGCGAGATTTGCTCGAAAAGTTTCACCCAATCGACGACATTGATCGCGCATCTCAGGGCTCACAACGGCATTAAACCGTATGTTTGTGAGGTCTGTTCTCGACCGTTCACTACAAACGCCTATCTAAAGATGCACATGAGGACGCACACTCAAGAACGGCCGTACATTTGTCAGTACTGTTCGCGCGCTTTCGCCAGAGCCGACACGCTCGCCAATCACTTGACATCGCACACCGGCGAGGCCAAGTATCACTGCAAATATTGTCCGAAAAACTTCCGTCGCCTGAAATCCCTGAAGGAGCACGTTTTCATTCACACAGGTCAAAGACCATACGCTTGCCCGACTTGCGACCGCCGTTTCAACAACAACGGAAGTCGCTACGCCCATAGCAAGAGATGCAAACAAAACTTTGTTCAAAACCAGAATCGTGGCCAAACGTTGACGCAAGTACAATCTTCCCAGAATCAGCAAAGAATATTGCATCAGCAAACCACTCTTGGACAGACGCAACTGTTGAAAGCACAGAACATTAAAACTATTACGATCACTAGGCAACCAGATGCCGTTGCTGCCCAACACGTTGCGCAGCATCAAGAAATAATAATGCCCCTGATCTTTCCTTTAACCGTCACAGTCGCCGATATCAGCGAAGAAGTTATATTACCGGAAGGAACCAAATTGTTTACGACCACTTAA
Protein Sequence: MDAVGINTSDSAQNEEESIVSTVEICRVCLLGNLVMRDLFLENEVSSLSAKAMSFTNVKMLPGDGLPTRVCCMCADKLESAYEFKLQVEQADTVLREKFVTMNMKEELFLNEVEVHLEVGERNEDIERMHIENHYQNTVETLETMSGDEKSSLLKDQLALLQVGKLAEQEQTITEQHNSTVMEEGIMSEQMLDECSNRDEDNGKAVDIITKDEIILKHENISTVEHDYILQQDCILENNSQRKEGTGEEEEEREEQQLISEESFSRDDCVQYVNMLVKAADVTHREDGEDEDPSEIEQSHEECSRTNAKLEEESQCQSETRRSKRKQLESSTDPMRDSDEENYFENLNLSSRLKKAEDSNKSERIFFMCYLCDKEFLSKNVLREHMHSHEEVREVLSLRKSVEKPEKDVEKCNNLTKLPPSGKRSNKCPYCGKQYIYIISFSKHLKKHEKEKEEAKEESLPLEISFHEDEHSLDFEDFADKDNMNSEYRKRVRKRVGVVVTKSEKEEPMQTEEEQQEGEEEAVDEEKEDSEGTGCEEKAKRKEKETSSEDKERICNRNENGERKKREARVESSFACDKCLEKFSTRRGLRKHSILHAALRCSVCEEEFDSLEKLRNHRAKHVVEGVLSEQDLETGTEFPLDRDKDGCRVVVDKRKEEEQVQGPHEGRRRKEKEWERVREREREGESQTQLSENVLKRSARNTEMHSEVEFSCKVCHQRYTRMDLLQRHMEQHERVKNYKCTECNKTFGNELTLRNHLIATNHKTFVRGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYEDEDEREEKIAERNSTDGNYGRNKREILSPKKHNYSKKELECTSCNKKCSSKQSLTKHMEQHVKQEKTVKVEREREREREKEREREREREKERQRQRQGTFGDKRERQRSCANNDAVELSEVNKDDDYDSDFESGLDWPMDNHECVKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFVQNQNRGQTLTQVQSSQNQQRILHQQTTLGQTQLLKAQNIKTITITRQPDAVAAQHVAQHQEIIMPLIFPLTVTVADISEEVILPEGTKLFTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00865472;
90% Identity: iTF_00865472;
80% Identity: -