Basic Information

Insect: Drosophila funebris
Gene Symbol: -
Assembly: GCA_018901825.1
Location: JAEIFK010000692.1:2080952-2082660[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4.6e-16 9.5e-13 47.5 0.0 2 45 370 413 369 413 0.95

2 3 0.025 53 3.5 0.0 27 37 442 452 439 457 0.89

3 3 1.1e-20 2.4e-17 62.3 0.0 2 42 479 519 478 521 0.96

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4.6e-16	9.5e-13	47.5	2	45	370	413	369	413	0.95
2	3	0.025	53	3.5	27	37	442	452	439	457	0.89
3	3	1.1e-20	2.4e-17	62.3	2	42	479	519	478	521	0.96

Sequence Information

Coding Sequence: ATGAATCACCTGAAATGGATGGGTCACTCATCCACAATTATGGATATTCAGCGCGTTCTTCTAAACCAGCAAAGCAACAACCAAAGCTGCGAGGTATTGCTAGTGGCCAAAGATGGTATCAGTGTACGGGCGCATCTCTTCGTTCTTAGCACTTGCAGCGATCTCATGCGTAATCTGTTAGTCGATTTACCTGTCGGCCAGGAGGCAACAGTTATTCTGCCAGACATTCGCGGAGAATTGTTGGAGAGCATGTTGTCGTTTATTTACATGGGAGAAACCAGCTTACCATCTGTCCTGCTTACTGAGTTTCTGGAAGCGATCAATCTATTAGGCATTAAGTCCGCCATAAGTTTTGAAACAAATCCCACAGCGATGACAACCTCAAATGTTGTTAGTGGCGCAATGGCTGTTGAGGCAGCCAAGTCTATTAGTGGCTTGCATATTGCGAATACAGCTCTTATGGAAGAGGAGGAGGAAGAGGATGCCAACGTGGTCGTCGGAAAATTAGAAGTGGGAAATACTGTACTCAGTGACCCGCAACAGACCCAACAGCAGGACGGAAGATCATTGGAATTCCTTGATGTGTACACTGATCCGCCAAAAATAACATATTCCATTGAACATATGGGTGGCACATCGAGTGGAAATCAGTATATATTGACTGAGAATACGGGTACATTTACCATAACACAATCCGCATCATCAGTGACAAAATTAGGAGGTCCAGTAGGTTCAGCTGTGGTGGACCAGGTTGCCGGTGGTGAGTTGGCAGTAGATGATGCGGAAGCTGACGTTACTGACGATCATGAGGAGTCCGAGTCACATTTAATCGAAGAGGATTATGTCCCATCAGCTGGTCCCCTAATAGAGATGGGTGCGGATGCTGATGTTGATATGGCTGAAGATGCAATGCACGAAGAGGATGCTGGAGAAGAAGATGAAGAAGAGGAATTACTAGATGTAAAGCCACGCAAATCTCAACTAGATATGAAAATATTGAGAACAAAAGTGCAGCCACGTTCAACGTCCTCAAAAGTTTCAAAGAAAACAATGACTAAACAACACCAACAATATGCGGCCCTCAAAAAAGAAATCAAGGATGATATCAATGATGCCTTGGAATTGGCCGCAGATGCTGTGCTCCACGAGGGTCTCAGTCTTCAAAAGGCTGCGGATCGCTTTGACATATCAAAAACCGTATTGTGGCGACGGGTGCGTTCCAATCCGGCCTACATGAGAATAAAACGTGAAAAGCCTTCTCTCTCGGAAGCTTATGAGCGCTTAAAGAACGGTGACTCGCTGAAAAGCATTAGTCAGGATTTGAGTATACCCATGTCGACGTTACACCGACACAAGGTGCGACTTGCGGCCCAGGGTCGTCTGCCCGAATTCGTTGCTTGTCGGCGACGGGACAGTACTCCGAAGGACGAGCTACGTGACAAGCTAGCCAAGGCGGTACATGCATGCATCAATGGAGGCATGTCGCAGAACCATGCAGCAAACCTCTTTGAAATACCCAAGAGTACACTCTGGAGGCACTTGCAGCGACGGGTCACAGAGGCGGAACGCAAAGTCAAAGAGGAGCAGGAGGAAGAAGACGATGAAGACGTTCTCAACTAG
Protein Sequence: MNHLKWMGHSSTIMDIQRVLLNQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPVGQEATVILPDIRGELLESMLSFIYMGETSLPSVLLTEFLEAINLLGIKSAISFETNPTAMTTSNVVSGAMAVEAAKSISGLHIANTALMEEEEEEDANVVVGKLEVGNTVLSDPQQTQQQDGRSLEFLDVYTDPPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVTKLGGPVGSAVVDQVAGGELAVDDAEADVTDDHEESESHLIEEDYVPSAGPLIEMGADADVDMAEDAMHEEDAGEEDEEEELLDVKPRKSQLDMKILRTKVQPRSTSSKVSKKTMTKQHQQYAALKKEIKDDINDALELAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLSIPMSTLHRHKVRLAAQGRLPEFVACRRRDSTPKDELRDKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEEDDEDVLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00549654;
90% Identity: iTF_00601697; iTF_00533922; iTF_00601923; iTF_00557828; iTF_00608552; iTF_00558025; iTF_00608361; iTF_00583599; iTF_00583795; iTF_00586070; iTF_00533722; iTF_00510653; iTF_00585886; iTF_00537429; iTF_00537615; iTF_00528918; iTF_00528721; iTF_00519080; iTF_00519270; iTF_00575499; iTF_00575502; iTF_00575700; iTF_00575702; iTF_00478641; iTF_00470979; iTF_00470788; iTF_00478834; iTF_00569082; iTF_00568896; iTF_00585108; iTF_00585322; iTF_00506780; iTF_00506985; iTF_00522878; iTF_00523062;
80% Identity: iTF_00510653;