Drel011191.1
Basic Information
- Insect
- Drosophila rellima
- Gene Symbol
- -
- Assembly
- GCA_035043635.1
- Location
- JAWNMV010000806.1:1507195-1508796[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.2e-16 1e-12 47.6 0.0 2 45 364 407 363 407 0.95 2 3 0.034 58 3.6 0.0 27 37 436 446 433 451 0.89 3 3 4e-19 6.7e-16 57.8 0.0 2 42 473 513 472 515 0.96
Sequence Information
- Coding Sequence
- ATGGGTCACTCGTCCACAATTATGGATATCCAGCGCGTTCTTCTTAACCAGCAAAGCAGCAACGAAAGCTGTGAGGTAGTGCTAGTGGCCAAAGATGGTATCAGTGTTCGGGCCCATCTCTTCGTTCTTAGCACGTGCAGCGATCTCATGCGTAACCTGCTGGTGGATTTACCCGCAGGCCAGGAGGCAACAGTTATTCTGCCCGACATTCGCGGCGAGCTGCTGGAGAGCATGTTATCGTTTATTTATATGGGAGAAACCAGCCTATCATCTGCCCTGCTCACCGAGTTTCTGGAAGCGATCAACCTATTGGGCATCAAGTCTGCCATCAGTTTTGAAACGAATCCCACAGCGGTGACCACCTCAAATGTTGTCAGCGGCGCTATGGCTGTTGAGGCAGCCAAGTCAATAAGTGGATTGCACATTGCGAATACAGCACTTatggaagaggaggaggaagaggatgCCAACGTGGTTGTTGGAAAACTAGAAGTCGGCAATTCTGTACTGACTGACCCGCAACAGAGCCAACAGCAGGACGGAAGATCCCTGGAATTTCTCGATGTGTACACTGATCAGCCAAAAATAACATATTCCATTGAGCATATGGGTGGCACATCGAGTGGCAATCAGTATATATTGACGGAGAACACAGGGACATTTACCATAACACAATCCGCATCCTCAGTGGCAAAATTAGGAGGTGCGGTCGGCTCAGCTGTGGTGGACCAGGTATCCGGTGGTGAATTGGCAGTGGATGATGCGGAGGCCGATGTCATTGACGATCATGAGGAATCCGAGTCACATTTAATCGAAGAGGACTATGTCCCATCTGCTGGTCCACTGATTGAGATGGGAGCagatgctgatgttgataTGACTGAAGATGTAATGCACGAGGATGATGCtggagaagaggaagaagaagaggagctTCTGGATGTCAAACCACGCAAATCGCAGCTCGACATGAAAATCTTGAAAACTAAAGTACAGCCGCGTTCAACGACCTCAAAGGCTTCAAAGAAAACAATGACcaaacagcatcaacaatatGCGGCACTCAAAAAGGAGATCAAGGACGACATTAATGATGCCCTGGAACTGGCAGCAGATGCCGTGCTTCACGAGGGTCTCAGTCTTCAAAAAGCCGCTGATCGCTTTGACATATCGAAAACCGTATTGTGGCGACGTGTGCGTTCGAATCCGGCCTACATGCGAATAAAACGCGAGAAGCCCTCACTCTCGGAGGCGTATGAGCGTCTAAAGAACGGCGATTCGCTGAAAAGCATTAGCCAAGATCTGAGTATACCCATGTCGACGCTACACCGACACAAGGTGCGGCTAGCGGCCCAGGGTCGTTTACCCGAATTCGTTGCCTGCCGGCGACGGGATAGCACACCGAAGGACGAGCTGCGGGACAAGCTAGCCAAGGCGGTGCATGCCTGTGTTAATGGAGGCATGTCCCAGAATTATGCAGCAAATCTCTTCGAAATACCCAAGAGCACACTCTGGCGACACTTGCAGCGTCGGGTCACTGAGGCCGAGCGCAAAGTTAAAGAGGAACAGGAGGAAGAAGATGAGGAGGACGTTCTCAACTAG
- Protein Sequence
- MGHSSTIMDIQRVLLNQQSSNESCEVVLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLSSALLTEFLEAINLLGIKSAISFETNPTAVTTSNVVSGAMAVEAAKSISGLHIANTALMEEEEEEDANVVVGKLEVGNSVLTDPQQSQQQDGRSLEFLDVYTDQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVAKLGGAVGSAVVDQVSGGELAVDDAEADVIDDHEESESHLIEEDYVPSAGPLIEMGADADVDMTEDVMHEDDAGEEEEEEELLDVKPRKSQLDMKILKTKVQPRSTTSKASKKTMTKQHQQYAALKKEIKDDINDALELAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLSIPMSTLHRHKVRLAAQGRLPEFVACRRRDSTPKDELRDKLAKAVHACVNGGMSQNYAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEEDEEDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00510457;
- 80% Identity
- iTF_00586070;