Dpha004860.1
Basic Information
- Insect
- Drosophila phalerata
- Gene Symbol
- -
- Assembly
- GCA_951394115.2
- Location
- OX596004.2:29216060-29217618[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.4e-16 3e-13 49.8 0.0 2 45 366 409 365 409 0.95 2 3 0.034 75 3.7 0.0 27 37 438 448 435 453 0.89 3 3 0.53 1.2e+03 -0.1 0.0 2 11 475 484 474 489 0.90
Sequence Information
- Coding Sequence
- ATGGGTCACTCGTCCACAATTATGGATATCCAGCGCGTTCTCCTCAACCAGCAGAGCAGCAACGAAAGCTGCGAGGTTTTGCTGGTGGCCAAAGATGGTATCAGTGTCCGAGCACATCTCTTCGTGCTCAGCACGTGCAGTGATCTAATGCGTAATCTGCTCGTCGATTTACCAGTCGGCCAGGAGGCAACCGTTATCCTGCCCGACATTCGCGGGGAGCTGCTGGAGAGCATGTTATCGTTTATTTACATGGGAGAGACCAGCTTATCATCTGCCCTGCTAACCGAGTTTCTCGAAGCGATCAATCTCTTGGGCATCAAATCGGCCATTAGCTTTGAGACGAATCCCACAGCGATGAGCACCACAAATGTGGTGAGTGGAGCAATGGCTGTGGAGGCAGCCAAGTCCATTACTGGCTTGCACATTGCGAATACAGCACTtatggaggaggaggaggaagaggatGGCAATGTGGTTGTCGGCAAACTGGAAGTGGGCAACTCTGTGCTCACTGACCATCCGCATCCGCAACAGAGCCAGCAGCAGGATGCCAGATCCTTGGAATTCCTCGATGTGTACACGGATCAGCCAAAGATAACATATTCCATTGAACACATGGGTGGCACCTCGAGTGGCAATCAGTACATATTAACGGAGAACACGGGCACATTCACCATCACACAATCCGCATCCTCAGTGGCGAAATTGGGAGGCACTGTTGTTGACCATGTCACCGGTAGTGAGTTGGCGGTGGATGATGGGGACGCTGATGTTATTGACGATCATGAGGAATCCGAGTCACATTTAATTGAAGAGGACTATGTTCCAACTGCTGGTCCCTTGATAGAGATGGGTGcagatgcggatgcggatgttGATATGACTGAGGATGTAATGCACGAGGAAGATGCCGgtgaagaggaggaggaggaggaggaattACTGGATGTGAAGCCACGCAAATCGCAGCTAGACATGAAAATCTTGAGGGCAAAGGTGCAGCCACGTTCGACGACCTCGAAGGCATCCAAAAAGACAATGACCAAACAGCATCAACAATATGCGGAACTCAAGAAGGAGATCAAGGACGACATCAATGATGCCCTCGATCTGGCAGCAGACGCAGTGCTTCACGAGGGTCTCAGCCTGCAAAAGGCTGCTGATCGTTACGACATATCGAAGACCGTATTGTGGCGACGTGTCCGTTCCAATCCTGCCTACATGAGAATCAAACGCGAGAAGCCCTCACTTTCGGAGGCGTATGAGCGTCTGAAGAACGGTGACTCCTTGAAGAGCATTAGTCAAGATCTGAGCATACCCATGTCCACATTGCACAGACACAAGGTGCGTCTGGCGGCTCAGGGTCGTTTGCCCGAATTCGTTGCCTGTCGGCGACGGGACAGCACTCCCAAGGACGAGCTGCGGGACAAGCTGGCCAAGGCGGTACATGCCTCGTCGGGTCACGGAGGCGGAGCGTAA
- Protein Sequence
- MGHSSTIMDIQRVLLNQQSSNESCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPVGQEATVILPDIRGELLESMLSFIYMGETSLSSALLTEFLEAINLLGIKSAISFETNPTAMSTTNVVSGAMAVEAAKSITGLHIANTALMEEEEEEDGNVVVGKLEVGNSVLTDHPHPQQSQQQDARSLEFLDVYTDQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVAKLGGTVVDHVTGSELAVDDGDADVIDDHEESESHLIEEDYVPTAGPLIEMGADADADVDMTEDVMHEEDAGEEEEEEEELLDVKPRKSQLDMKILRAKVQPRSTTSKASKKTMTKQHQQYAELKKEIKDDINDALDLAADAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLSIPMSTLHRHKVRLAAQGRLPEFVACRRRDSTPKDELRDKLAKAVHASSGHGGGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00510457;
- 80% Identity
- iTF_00575700;