Dara013562.1
Basic Information
- Insect
- Drosophila arawakana
- Gene Symbol
- -
- Assembly
- GCA_018151165.1
- Location
- JAECWX010000182.1:478688-480423[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.7e-16 1.5e-12 46.8 0.0 2 45 379 422 378 422 0.95 2 3 0.026 51 3.5 0.0 27 37 451 461 448 466 0.89 3 3 1.3e-20 2.6e-17 62.1 0.0 2 42 488 528 487 529 0.96
Sequence Information
- Coding Sequence
- ATGAATCATCTAAAATGGATGGGTCACTCGTCCACAATAATGGATATTCAGCGTATTCTACTCAGTCAGCAGAGCAACAATCAAAGTTGCGAGGTATTGCTGGTGGCCAAGGATGGGATAAGTGTGCGAGCGCATCTCTTTGTGCTGAGCACATGCAGCGATCTAATGCGCAATCTATTGGTCGATTTACCCGTTGGCCAGGAGGCGACAGTTATTCTGCCCGACATACGCGGCGAGCTGCTGGAAAGCATGTTGTCGTTTATTTACATGGGTGAGACAAGCCTGCCATCTGCCCTGCTCACCGAGTTTTTGGAAGCTATCAATCTATTGGGCATCAAATCCGCCATCAGTTTTGAGACGAATCCCACAGCGATGACCACCGCAAATGTCGTCAGTGGCGCAATGGCTGTTGAGGCAGCCAAGTCTATAAATGGTTTGCATATTGCGAATACAGCGTTGATGGAAGAGGAGGAGGAAGAGGAGACTACCAATGTGGTAGTCGGCAAACTGGATGTGGGTAATTCTGTACTCAACGATTCGCAGCAGAGTCAACAGCAGGACGGCAGATCTTTGGAATTCCTCGATGTGTACAGCGATCAGCCAAAAATAACATATTCCATTGAGCACATGGGTGGCACATCCAATGGCAATCAGTATATACTGACTGAGAATACAGGTTCGTTTACCATAACCCAATCGGCATCGTCAGTGACCAAGTTGGGTGGAGCAATAGCCACAGCTGTAGTCGACTCGGTTACCGGTGGCGAGTTAGCCGTGGATGATGCGGAGGCTGATGTAACTGACCACGATCACGAGGAGTCCGAGTCACATTTAATCGAGGAGGAATACGTTCAATCCACTGTTCCGCTAATTGATATGGGTTCTGGCGATGCGGAAGTTGATATAGCTGAGGAGGCAATGCACGAGGATGATGCTGGCGATGATGATGATGAGGAGGAGTTGATAGATGTTAAGCCTCGCAAATCCCAGCTCGACATGAAAATCTTAAGAACTAAAGTCCAGGGACAAGGAGTCGGACAGTCCCGTTCAACATCCTTGAAGGCGTCAAAGAAGACGATGACGAAGCAACACCAACAATACGCGGCACTCAAAAAGGAATTCAAGGACGACATCAATGATGCCCTGGAGCAGGCAGCAGACGCCGTTCTCCACGAAGGTCTCAGTCTCCAGAAGGCTGCCGATCGCTTCGATATATCCAAAACAGTTCTGTGGCGGCGAGTACGTTCCAATCCGGCCTACATGAGAATAAAGCGCGAGAAACCTTCACTCTCGGAGGCGTATGAGCGGCTGAAGAACGGGGATTCACTGAAGAGCATCAGCCAAGATCTTAGTATACCCATGTCCACGTTACATCGCCACAAAGTGCGATTGGCAGCCCAAGGCCGTCTGCCGGAATTCGTTGCCTGTAGGCGACGGGACAGTACGCCAAAGGATGAGCTGCGGGACAAATTGGCCAAGGCAGTGCATGCCTGCATCAATGGCGGCATGTCACAGAACCATGCCGCCAATCTCTTTGAAATACCCAAGAGCACACTCTGGCGCCACCTGCAGCGGCGCGTCACGGATGCGGAGCGAAAGGTGAAGGAGGAACAGGAGGAGGAAGAAGACGAAGACGTTCTCAACTAA
- Protein Sequence
- MNHLKWMGHSSTIMDIQRILLSQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPVGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAMTTANVVSGAMAVEAAKSINGLHIANTALMEEEEEEETTNVVVGKLDVGNSVLNDSQQSQQQDGRSLEFLDVYSDQPKITYSIEHMGGTSNGNQYILTENTGSFTITQSASSVTKLGGAIATAVVDSVTGGELAVDDAEADVTDHDHEESESHLIEEEYVQSTVPLIDMGSGDAEVDIAEEAMHEDDAGDDDDEEELIDVKPRKSQLDMKILRTKVQGQGVGQSRSTSLKASKKTMTKQHQQYAALKKEFKDDINDALEQAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLSIPMSTLHRHKVRLAAQGRLPEFVACRRRDSTPKDELRDKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTDAERKVKEEQEEEEDEDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00610763;
- 90% Identity
- iTF_00510457;
- 80% Identity
- iTF_00478834;