Dhis014572.1
Basic Information
- Insect
- Drosophila histrio
- Gene Symbol
- -
- Assembly
- GCA_958299025.2
- Location
- OY729166.1:12453650-12455257[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.9e-17 1.3e-13 50.7 0.0 1 45 365 409 365 409 0.96 2 3 0.031 68 3.6 0.0 27 37 438 448 435 453 0.89 3 3 1.4e-20 3e-17 62.3 0.0 2 42 475 515 474 517 0.96
Sequence Information
- Coding Sequence
- ATGGGTCACTCGTCCACAATTATGGATATTCAGCGCGTCCTCCTGAACCAGCAGAGCAATAATCAGAGCTGCGAGGTGTTGCTGGTGGCCAAGGATGGCTTCAGTGTGCGCGCCCATCTCTTCGTGCTCAGCACGTGCAGCGATCTCATGCGCAATTTGCTTGTGGATTTACCTGTTGGCCAGGAGGCAACCGTCATTCTGCCCGACATTCGCGGCGAGCTGCTGGAGAGCATGTTGTCGTTTATTTACATGGGCGAAACCAGTTTACCATCTGCCCTGCTCACCGAGTTTTTGGAAGCGATCAATTTGCTGGGCATCAAGTCTGCCATTAGCTTTGAAACGAATCCCACAGCGATGACAAGCTCTAATGTGGTCAGCGGTGCAATGGCTGTTGAGGCGGCCAAGTCGATCAGTGGTCTACACATTGCGAATACAGCCCTTatggaggaagaggaggaggaggaggatgctAACGTGGTTGTGGGAAAACTAGAAGTGGGCAGTTCAGTGCTCAGCGACCCACAACAGAGCCAACAGCAAGACGGCAGATCCTTGGAATTCCTCGATGTGTACAGTGATCAgccaaaaataacatattCCATTGAGCACATGGGTGGCAATTCAAGTGGCAATCAGTACATATTGACGGAAAACACGGGCACATTCACCATAACACAATCCGCAACTTCGGTGACTAAATTGGGAGATGCAGTGGGCACGACTGTGGTGGAACCGGTAACCGTTGGCGAGCTAGCAGTGGATGATGTGGAAACAGAAGTTACTGACGACCACGAGGAGTCCGAGTCACATTTAATCGAAGAGGATTATGTGCCAACAGCTGGTCCGTTAATAGAGATGAGTGCagatgctgatgttgatatGACTGAGGATGTAATGCATGAGGATGATGCTggcgaggaggaggaagaagaagaggaactACTCGATGTAAAGCCTCGCAAGTCACAGCTAGACATGAAAATCCTAAGAACAAAGGTGCAACCGCGTCCGGCGTCCGCAAAGGCTTCCAAGAAGACAATGACcaagcaacatcaacaatatGCGGCACTCAAGAAGGAAATCAAGGACGACACCAACGACGCCCTGGATCTGGCAGCAGACGCAGTGCTGCACGAGGGTCTCAGCCTTCAAAAGGCCGCCGATCGCTATGACATATCAAAAACCGTATTGTGGCGACGTGTTCGTTCCAATCCGGCGTACATGAGGATCAAACGAGAGAAACCATCGCTATCGGAGGCATATGAACGCCTGAAGAACGGCGACTCGTTGAAGAGCATTAGCCAGGATTTGAGTATACCCATGTCGACGTTACATCGTCACAAGGTGCGTCTGGCGGCCCAGGGTCGATTACCCGAATTCGTGGCCTGTCGGCGGCGGGACAGCACCCCGAAGGACGAGCTGCGGGACAAGCTGGCCAAGGCGGTGCACGCCTGCATCAATGGAGGCATGTCCCAGAATCATGCAGCGAATCTCTTTGAAATACCCAAGAGCACACTCTGGCGGCACTTGCAGCGTCGCGTTACGGAGGCGGAGCGAAAGGTcaaggaggagcaggaggaggaagaTGAGGACGACGTTCTCAACTAG
- Protein Sequence
- MGHSSTIMDIQRVLLNQQSNNQSCEVLLVAKDGFSVRAHLFVLSTCSDLMRNLLVDLPVGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAMTSSNVVSGAMAVEAAKSISGLHIANTALMEEEEEEEDANVVVGKLEVGSSVLSDPQQSQQQDGRSLEFLDVYSDQPKITYSIEHMGGNSSGNQYILTENTGTFTITQSATSVTKLGDAVGTTVVEPVTVGELAVDDVETEVTDDHEESESHLIEEDYVPTAGPLIEMSADADVDMTEDVMHEDDAGEEEEEEEELLDVKPRKSQLDMKILRTKVQPRPASAKASKKTMTKQHQQYAALKKEIKDDTNDALDLAADAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLSIPMSTLHRHKVRLAAQGRLPEFVACRRRDSTPKDELRDKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEEDEDDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00510457;
- 80% Identity
- iTF_00519270;