Dneo006732.1
Basic Information
- Insect
- Drosophila neotestacea
- Gene Symbol
- -
- Assembly
- GCA_035044365.1
- Location
- JAWNMD010000157.1:3400305-3401906[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.8e-16 1.2e-12 47.6 0.0 2 45 364 407 363 407 0.95 2 3 0.027 46 4.0 0.0 27 37 436 446 433 451 0.90 3 3 6.9e-19 1.2e-15 57.1 0.0 2 42 473 513 472 515 0.95
Sequence Information
- Coding Sequence
- ATGGGTCACTCGTCCACAATTATGGATATCCAGCGCATTCTTTTGAACCAGCAAAGCAACAACCAAAGTTGCGAGGTATTGTTAGTGGCCAAAGATGGGATCAGTGTGCGGGCGCATCTCTTCGTTCTTAGCACGTGCAGCGATCTCATGCGTAATCTATTGGTCGATTTACCTGTCGGCCAAGAGGCAACAGTTATTCTGCCCGACATTCGTGGCGAGCTGCTGGAGAGCATGTTGTCGTTTATTTACATGGGAGAAACCAGCCTACCATCGGCCATGCTCACCGAGTTTCTGGAAGCGATTAACCTATTGGGGATAAAATCCGCCATAAGCTTTGAAACGAATCCCACGGCAGTGACCGCCTCAAATGTAGTCAGTGGAGCAATGGCTGTTGAGGCAGCTAAGTCTATCAGTGGTTTGCACATTGCGAACACAACGCTTatggaagaggaggaggaagaggttAGCAACGTGGTCGTCGGCAAACTAGAAGTGGCAAATTCCGTACTGACTGATCCCCAACAGAGCCAACAGCAGGACGGGAGACAGTTAGAATTCCTCGACGTGTACAGTGATCAGCCAAAAATAACATATTCCATTGAGCATATGGGTGGCACATCGAGTGGAAACCAGTACATATTGACGGAAAATACGGGTACATTTACCATAACACAATCCGCATCTTCTGTGGCAAAATTGGGAGGCCCAGTAGGGTCAACTGTGGTGGACTCGGTTAGTGGTGGTGAGTTGGCCGTAGATGATACGGAGGCTGATGTTACTGACGATCATGAAGAATCTGAGTCACATTTAATCGAAGAGGACTATGTACCATCAGCTGGCCCACTAATAGAAATGGGTGCGGATGGTGATGTTGACATGACTGAAGATGCAATGCACGAGGATGATGCTggagaagaagaggaagacgAGGAACTACTAGATGTAAAGCCTCGTAAATCGCAGCTAGACATGAAAATTTTAAGAACAAAAGTACAATCGCGTGCAACATCTTCAAAGGCGTCAAAGAAAACAATGAccaaacaacatcaacaatatcAGGTACTCAAGAAGGAAATCAAGGAAGACATAAATGATGCCCTGGAACTTGCAGCAGATGCAGTGCTTCATGAGGGTCTAAGTCTTCAAAAGGCTGCTGATCGCTTCGACATATCGAAAACTGTATTGTGGCGACGTGTGCGCTCCAATCCGGCCTATATGAGAATTAAACGAGAGAAACCCTCACTCTCTGAGGCATATGAGCGCTTAAAGACCGGTGACTCGCTGAAAAGCATTAGCCAAGATTTGAATATCCCCATGTCAACGTTACACCGACACAAAGTGCGTCTTGCAGCCCAGGGCCGTTTACCCGAATTCGTTTCCTGTCGGCGACGAGACAGCACTCCCAAAGATGAACTGCGAGACAAATTAGCCAAGGCGGTCCATGCCTGTATTAATCAAGGCATGTCGCAAAACCATGCAGCAAATCTCTTTGAAATACCCAAGAGCACACTCTGGCGACACCTGCAGCGTAGGGTTACAGAGGCggaaagaaaagttaaagaagAACAGGAGGAAGAAGATGAGGAAGACGTTCTTAACTAG
- Protein Sequence
- MGHSSTIMDIQRILLNQQSNNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPVGQEATVILPDIRGELLESMLSFIYMGETSLPSAMLTEFLEAINLLGIKSAISFETNPTAVTASNVVSGAMAVEAAKSISGLHIANTTLMEEEEEEVSNVVVGKLEVANSVLTDPQQSQQQDGRQLEFLDVYSDQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVAKLGGPVGSTVVDSVSGGELAVDDTEADVTDDHEESESHLIEEDYVPSAGPLIEMGADGDVDMTEDAMHEDDAGEEEEDEELLDVKPRKSQLDMKILRTKVQSRATSSKASKKTMTKQHQQYQVLKKEIKEDINDALELAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKTGDSLKSISQDLNIPMSTLHRHKVRLAAQGRLPEFVSCRRRDSTPKDELRDKLAKAVHACINQGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEEDEEDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00510457;
- 80% Identity
- iTF_00558025;