Dkun001539.1
Basic Information
- Insect
- Drosophila kuntzei
- Gene Symbol
- -
- Assembly
- GCA_035042165.1
- Location
- JAWNLU010000379.1:220264-221850[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.1e-16 1.1e-12 47.6 0.0 2 45 360 403 359 403 0.95 2 3 0.034 62 3.6 0.0 27 37 432 442 429 447 0.89 3 3 1.4e-20 2.5e-17 62.5 0.0 2 42 469 509 468 511 0.96
Sequence Information
- Coding Sequence
- ATGGGTCACTCGTCCACAATTATGGATATCCAGCGCGTTCTTCTAAGCCAGCAAAGCAGCAACGAAAGCTGCGAGGTATTGCTAGTGGCCAAAGATGGTATCAGTGTGCGGGCACATCTCTTCGTACTTAGCACGTGCAGCGATCTCATGCGTAATCTACTGGTCGATTTACCTGTCGGCCAGGAGGCAACAGTTATCCTGCCCGACATTCGCGGCGAGCTGCTGGAGAGCATGTTATCGTTTATTTACATGGGAGAAACGAGCTTATCATCTGCTCTACTCACCGAGTTTTTGGAAGCGATTAACCTACTTGGCATCAAATCCGCCATAAGCTTTGAAACTAATCCCACAGCGATGACCACCACAAATGTTGTCAGCGGCGCAATGGCTGTTGAGGCAGCCAAGTCCATTAGTGGCTTGCACATTGCGAATACAGCACTTatggaagaggaggaggaagaggatgGCAACGTGGTCGTCGGCAAACTAGACGTGGGCAATTCTGTACTCTCTGACCCGCAACCGAGCCAACAGCAGGATGGAAGATCCTTGGAGTTCCTCGATGTTTATACGGATCAgccaaaaataacatattctATTGAACACATGGGTGGCACATCGAGTGGAAATCAGTACATATTAACGGAGAACACGGGTACATTTACCATTACACAATCCGCATCCTCAGTAACAAAATTAGGAGGCTCAGTGGTTGACCAAGTGACCGGTGGTGAGTTGGCAGTGGATGATGGGGAGGCTGATGTAATTGACGATCATGAGGAATCCGAGTCACATTTAATCGAAGAGGACTATGTCCCATCGACTGGCCCCCTGATAGAGATGGGTGCGGATGCGGATGTTGATATGACTGAAGATGTAATGCACGAGGAAGATGCTggagaagaggaggaggaagaggaattACTAGATGTTAAACCACGCAAATCGCAGCTAGACATGAAAATCTTGAGAACAAAGGTAAATCCGCGATCAACGACCTCAAAGGCTTCAAAGAAAGCAATGACCAAACAGCATCAACAATATGCGGAACTAAAAAAGGAGATCAAGGACGACATTAACGATGCCCTGGAACTGGCAGCAGACGCAGTGCTTCACGAGGGTCTCAGTCTTCAAAAGGCTGCTGATCGCTTCGATATATCGAAAACCGTACTGTGGCGACGTGTCCGATCCAATCCCGCCTACATGAGAATTAAACGTGAGAAACCCTCGCTCTCGGAGGCGTATGAGCGCTTAAAGAACGGTGACTCCCTGAAAAGCATTAGCCAGGATTTGAGTATACCCATGTCAACGTTGCACAGGCACAAGGTGCGACTTGCGGCCCAGGGTCGTTTACCCGAATTCGTTGCCTGCCGGCGACGGGACAGCACCCCGAAGGACGAGCTTCGGGATAAACTGGCCAAGGCGGTGCATGCCTGTGTTAATGGAGGCATGTCCCAAAACCATGCGGCAAATCTCTTTGAAATCCCTAAGAGCACACTCTGGCGACACTTGCAGCGTCGCGTCACAGAGGCCGAACGAAAAGTCAAAGAGGAGCAGGAGGAAGAAGATGAGGACGTTCTCAACTAG
- Protein Sequence
- MGHSSTIMDIQRVLLSQQSSNESCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPVGQEATVILPDIRGELLESMLSFIYMGETSLSSALLTEFLEAINLLGIKSAISFETNPTAMTTTNVVSGAMAVEAAKSISGLHIANTALMEEEEEEDGNVVVGKLDVGNSVLSDPQPSQQQDGRSLEFLDVYTDQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVTKLGGSVVDQVTGGELAVDDGEADVIDDHEESESHLIEEDYVPSTGPLIEMGADADVDMTEDVMHEEDAGEEEEEEELLDVKPRKSQLDMKILRTKVNPRSTTSKASKKAMTKQHQQYAELKKEIKDDINDALELAADAVLHEGLSLQKAADRFDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLSIPMSTLHRHKVRLAAQGRLPEFVACRRRDSTPKDELRDKLAKAVHACVNGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEEDEDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00610763;
- 90% Identity
- iTF_00510457;
- 80% Identity
- iTF_00528918;