Basic Information

Insect: Bombus skorikovi
Gene Symbol: -
Assembly: GCA_014737355.1
Location: JACXIH010000047.1:814061-819304[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0015 9.7 6.5 0.3 25 44 115 134 100 143 0.77

2 9 0.00034 2.2 8.6 0.1 22 46 140 164 136 167 0.89

3 9 0.076 5e+02 1.1 0.0 27 47 260 280 252 283 0.86

4 9 0.49 3.2e+03 -1.5 0.0 22 34 337 349 335 364 0.74

5 9 0.00015 0.96 9.7 0.1 20 46 499 525 491 530 0.84

6 9 0.38 2.5e+03 -1.2 0.0 25 46 531 552 525 554 0.83

7 9 0.0012 7.8 6.8 0.1 26 52 590 616 578 617 0.91

8 9 0.0055 36 4.7 0.7 24 44 616 636 614 643 0.90

9 9 0.28 1.8e+03 -0.8 0.0 27 45 703 721 701 725 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0015	9.7	6.5	0.3	25	44	115	134	100	143	0.77
2	9	0.00034	2.2	8.6	0.1	22	46	140	164	136	167	0.89
3	9	0.076	5e+02	1.1	0.0	27	47	260	280	252	283	0.86
4	9	0.49	3.2e+03	-1.5	0.0	22	34	337	349	335	364	0.74
5	9	0.00015	0.96	9.7	0.1	20	46	499	525	491	530	0.84
6	9	0.38	2.5e+03	-1.2	0.0	25	46	531	552	525	554	0.83
7	9	0.0012	7.8	6.8	0.1	26	52	590	616	578	617	0.91
8	9	0.0055	36	4.7	0.7	24	44	616	636	614	643	0.90
9	9	0.28	1.8e+03	-0.8	0.0	27	45	703	721	701	725	0.80

Sequence Information

Coding Sequence: ATGGCATCTAGTAGGTACAATGCGCTAGATCCACTCGCCCCAACTTTTCTGATAGTAAAACTAGAAGATAATTACTTTCGGATACCGACGTCGCTGAGTGTGTTCATGATGAAGGAACCACCACCGGGTTCCACCGAAGAAAAGAAGGCTCAACCAGCAAAAGAAGATGAAGTTCATTCAACAAAGACAAATGAGACAGAAGAAAAAATAAAGGACGATTCAAGTAGCAACGATTCCTTCGAAGATCTCGACGACGCCCCCTTGGACTTCCGAAAGAGAGAACAGGAGCAAGAACAGGAGAAAAATAAATCTGCGAAACCAATACTCCCTAAGAAAAAAGTACACACGTGCGAGATCTGTTACGCGACTTTCGATCGTAAAAGTAAACATACACGACACATGTTCAAGCACAGTAACTCGAGACCTCATAAGTGTCCTATTTGCGCGAAAGGATTCAAAACCACAGCTCATCTAAGCAGGCACATGGAGGTTCACGATGAACCGGTAAACCTACATGCATGTAGTCTGTGTGACTTCAAAGCTCGCACCAAACCTTATCTGAAGATCCATTACATTAGAAAGCACACAGAAGACTACAACTATAAATGTGAACAATGTGGAAAGATGTTTAAGGTACAATCAGATTATACGACACACGTGAAAGATCATGATACAGAGTCTTGCGTGTGTGATATCTGTGGCTCGTCTTATCCCAGCAAAAGCTCGCTGTACTTCCATAAGCATTACAAACACAAGACGAAGGTGAAGAAGTTCCCCTGTCAGACGTGTAAGAAGAAGTTCAAGACGCAGAAGAATTTAGATAACCATATGGAGTTGCACAAGATTAAATACGTTTGTGAACAATGCGGGATGGAATTTAAGACGAAATATGGACTCACCAAGCATCTGAGGACTCATTCCGGGGAGAAGTCTTATTTGTGCGCGATTTGTGGGAAAACTTTTGGATGTCTCAGCTCACAGAAGATTCATCTATTGACGCACGTTGGCGAAAGGCCTTACGTATGCGACATTTGTGGTCAGAGTTTTACCCAGAGGTCACCCATGATGTTGCATCGCAGAAAGCACCCTGGGGTGCACCCACCACCTCCTCCCATTAAAATAACAAACCTGCTACATGGTGTACAAGACAAAATAATCGTGAACAAGAGTAGCAAGTCGACACAGCGTGATCCACTCGAGCAAACGTACCTCGTGGTGCAAAACGTCGACAAATACTTCCTCCTTCCCATGGAACACAAAACATCGGCACAGAAACACGGAGAAGAGTGCATTACTGGAGATATCACCATCAAGTTGGAGGAACAAGACATACCCGAAGACACGACCGAACAACAGCTAATCGAATCGTCTGAGCGAAAAGATCGACGAAAGATTGACGAAACTACTCAGGTACATACGAATCTATCTGTTCAGACGCCTGTACAATTTTCTCAATGGTTGGACCAATGTTCCAATGGTTCTGAAAGTATGAGGAGCAACGAGGAAACGTTTACTTGCGACTACTGTTCGAAGATCTTCAGGAAGAAGTACGCATTGCAGAGGCATTTAGAGACTCATAGTAACGTACGGGTGGAATGTTCGGTGTGCCATCGACTCCTAAAGACCAAGGAGACGCTGAAGCTTCATATGATGCTGCACGAAGATATCGGTAAAATATTCGAGTGCTCGGAATGCGGCTTTATGTCGAAACAAAAGCAGAGTATGACTCGTCATCAGATCAGGATGCACTCGAAGATCGCCGATTATAAATGTCCACTTTGCCCGAAGACGTTTAAATTTAACGGCGATCTTAAAAGACATCATGAAGCGAAACACGTGGTCGACCCATGTTATTGCGAGATTTGTGGGAAAACGTATCGAAATAGTCATTTTCTTCGTAAGCACCGGCGCATATGCAAGACACATAGAAACGCTAACACTCGTGTATATTACGGGGCAATTAGGGGTAATCAGAACATAGAGTGTGCGACCTCGCAAAACAAGGGTAAAGTGAAGCGAGTATTCAATTGCTCCAAGTGCAAATGGCGATTCAGCAGCTGGAAGTTACTAAATAAACACATGCAACGACATTTCCTCGTCTTTAACTGTGACATTTGTGGAGCCGTGTTTAAGTATAAGGCTTCGTTTTTGAAGCATCAAGAATCGCACAAACAATCTGAACAGTTTTAA
Protein Sequence: MASSRYNALDPLAPTFLIVKLEDNYFRIPTSLSVFMMKEPPPGSTEEKKAQPAKEDEVHSTKTNETEEKIKDDSSSNDSFEDLDDAPLDFRKREQEQEQEKNKSAKPILPKKKVHTCEICYATFDRKSKHTRHMFKHSNSRPHKCPICAKGFKTTAHLSRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSSKSTQRDPLEQTYLVVQNVDKYFLLPMEHKTSAQKHGEECITGDITIKLEEQDIPEDTTEQQLIESSERKDRRKIDETTQVHTNLSVQTPVQFSQWLDQCSNGSESMRSNEETFTCDYCSKIFRKKYALQRHLETHSNVRVECSVCHRLLKTKETLKLHMMLHEDIGKIFECSECGFMSKQKQSMTRHQIRMHSKIADYKCPLCPKTFKFNGDLKRHHEAKHVVDPCYCEICGKTYRNSHFLRKHRRICKTHRNANTRVYYGAIRGNQNIECATSQNKGKVKRVFNCSKCKWRFSSWKLLNKHMQRHFLVFNCDICGAVFKYKASFLKHQESHKQSEQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00221617; iTF_00228114; iTF_00221404; iTF_00215853; iTF_00216065; iTF_00227629; iTF_00218093; iTF_00215379; iTF_00219475; iTF_00219257; iTF_00227418; iTF_00217883; iTF_00215167; iTF_00220152; iTF_00219939; iTF_00231674; iTF_00231459; iTF_00224700;
90% Identity: iTF_00215167;
80% Identity: iTF_00228114;