Basic Information

Insect: Bombus difficillimus
Gene Symbol: -
Assembly: GCA_014737525.1
Location: JACXIT010000097.1:1082480-1087878[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0015 9.9 6.5 0.3 25 44 115 134 100 143 0.77

2 10 0.00034 2.3 8.6 0.1 22 46 140 164 136 167 0.89

3 10 0.076 5.1e+02 1.1 0.0 27 47 260 280 252 283 0.86

4 10 0.49 3.3e+03 -1.5 0.0 22 34 337 349 335 364 0.74

5 10 0.0014 9.6 6.6 0.1 21 47 499 525 491 530 0.83

6 10 0.12 8.3e+02 0.4 0.1 23 46 528 551 524 553 0.84

7 10 0.0011 7.2 7.0 0.1 26 52 589 615 579 617 0.92

8 10 0.0045 30 5.0 0.4 24 44 615 635 612 639 0.90

9 10 0.0088 59 4.1 0.3 15 40 634 659 633 662 0.85

10 10 0.28 1.9e+03 -0.8 0.0 27 45 702 720 700 724 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0015	9.9	6.5	0.3	25	44	115	134	100	143	0.77
2	10	0.00034	2.3	8.6	0.1	22	46	140	164	136	167	0.89
3	10	0.076	5.1e+02	1.1	0.0	27	47	260	280	252	283	0.86
4	10	0.49	3.3e+03	-1.5	0.0	22	34	337	349	335	364	0.74
5	10	0.0014	9.6	6.6	0.1	21	47	499	525	491	530	0.83
6	10	0.12	8.3e+02	0.4	0.1	23	46	528	551	524	553	0.84
7	10	0.0011	7.2	7.0	0.1	26	52	589	615	579	617	0.92
8	10	0.0045	30	5.0	0.4	24	44	615	635	612	639	0.90
9	10	0.0088	59	4.1	0.3	15	40	634	659	633	662	0.85
10	10	0.28	1.9e+03	-0.8	0.0	27	45	702	720	700	724	0.80

Sequence Information

Coding Sequence: ATGGCATCTAGTAGGTACAATGCGCTAGATCCACTCGCCCCAACTTTTCTGATAGTAAAACTAGAAGATAATTACTTTCGGATACCGACGTCGCTGAGTGTGTTCATGATGAAGGAACCGCCACCGGGTTCCACCGAAGAAAAGAAGGCTCAACCAGCGAAAGAAGATGGCGTTCATTCGACAAAGACAAACGAGACAGAAGAAAAAATAAAGGACGATTCAAGTAGCAACGATTCCTTCGAAGATCTCGACGACACCCCCTTGGATTTCCGAAAGAGAGAACAGGAGCAAGAACAGGAGAAAAATAAATCTGCGAAACCAATACTCCCTAAGAAGAAAGTACACACGTGCGAGATCTGTTACGCGACTTTCGATCGTAAAAGTAAACATACACGGCACATGTTCAAGCACAGTAACTCGAGACCTCATAAGTGTCCTATTTGCGCGAAAGGATTCAAAACCACAGCTCATCTAAGCAGGCACATGGAGGTTCACGATGAACCGGTAAACCTACATGCATGTAGTCTGTGTGACTTCAAAGCACGTACCAAGCCTTATCTGAAGATCCATTATATTAGAAAGCACACAGAAGACTACAACTATAAATGTGAACAATGTGGAAAGATGTTTAAGGTACAATCAGATTATACGACACATGTGAAAGATCATGATACAGAGTCTTGCGTGTGTGATATCTGTGGTTCGTCTTATCCCAGCAAAAGCTCGCTGTACTTCCATAAGCATTACAAACACAAGACGAAGGTGAAGAAGTTCCCCTGTCAGACATGTAAGAAGAAGTTCAAGACGCAGAAGAATTTAGATAACCATATGGAGCTGCACAAGATTAAATACGTTTGTGAACAATGCGGGATGGAATTTAAAACGAAATATGGCCTCACCAAACATCTAAGGACTCATTCCGGGGAGAAGTCTTATTTGTGCGCGATTTGTGGGAAAACTTTTGGATGTCTCAGCTCACAGAAGATTCATCTGTTGACGCACGTTGGCGAAAGGCCTTACGTATGCGACATTTGTGGTCAGAGTTTCACCCAGAGATCGCCCATGATGTTGCATCGCAGAAAGCATCCTGGGGTGCACCCACCACCTCCTCCCATTAAAATAACGAACCTGCTACACGGTGTACAAGATAAAATAATCGTGAACAAGAGTAGCAAGTCGACACAACGTGATCCGCTCGAGCAAACGTACCTCGTGGTGCAAAACGTCGACAAATACTTCCTCCTTCCCATGGAGCACAAAACATCGATACAGAAACACGAAGAAGAGTGTATTACTGGAGATATCACCATCAAGTTGGAGGAACAAGACATACCCGAAGACACGACCGAACAACAGCTAATCGAATCGCCTGAGCGAAAAGATTCTCAAATTGACGAAACTGCTCAGGTACATACGAATCTATCTGTTCAGACGCCTGTACAATTTTCTCAGTGGTTGGACCAATGTTCCAATGGTTCTGAAAGTATAACGAGCAACGAGGAAACGTTTATTTGCGACTACTGTTCGAAGATCTTCAGGAAGAAGTACGCGTTACAAAGGCATTTAGAGACTCATAGCAACGCACGGGTGGAATGTTCGGTGTGCCATCGACTCCTAAAGACCAAGAAGACGCTGAAGCTTCATATGATGCTGCACGAAGATACCGGTAAAATATTCGAGTGCTCGGAATGCGGCTTTATGTCGAAACGAAAGCAAAGTATGACTCGTCATCAGATCAGGATGCACTCGAAGATCGCCGGTTACAAATGTCCACTTTGCCCGAAGACGTTTAAATTTAACGGTGATCTTAAAAGACATCATGAAGCGAAACACGTGGTCGACCCATGTTATTGCGAGATTTGTGGAAAAACGTATCGAAATAGTCATTTTCTTCGGAAGCATCGGCGCATATCCAAGACACACAGAAACGCTTACACTCGTATATGTTACGGGGCAATTAGGGGTAATCAGAACATAGAGTGTGCAACCTCGCAAAACAAGGGTAAAGTGAAGCGAATATTCAATTGCTCCAAGTGCAAATGGCGATTCAGCAGCTGGAGGTTACTAAATAAGCACATGCAACGACATCTCCTCATCTTTAACTGCGATATTTGTGGAGCCGTGTTTAAGTATAAGGCTTCGTTTTTGAAGCATCAAGAATCGCACAAACAATCTGAACAGTTTTAA
Protein Sequence: MASSRYNALDPLAPTFLIVKLEDNYFRIPTSLSVFMMKEPPPGSTEEKKAQPAKEDGVHSTKTNETEEKIKDDSSSNDSFEDLDDTPLDFRKREQEQEQEKNKSAKPILPKKKVHTCEICYATFDRKSKHTRHMFKHSNSRPHKCPICAKGFKTTAHLSRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSSKSTQRDPLEQTYLVVQNVDKYFLLPMEHKTSIQKHEEECITGDITIKLEEQDIPEDTTEQQLIESPERKDSQIDETAQVHTNLSVQTPVQFSQWLDQCSNGSESITSNEETFICDYCSKIFRKKYALQRHLETHSNARVECSVCHRLLKTKKTLKLHMMLHEDTGKIFECSECGFMSKRKQSMTRHQIRMHSKIAGYKCPLCPKTFKFNGDLKRHHEAKHVVDPCYCEICGKTYRNSHFLRKHRRISKTHRNAYTRICYGAIRGNQNIECATSQNKGKVKRIFNCSKCKWRFSSWRLLNKHMQRHLLIFNCDICGAVFKYKASFLKHQESHKQSEQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00228336;
90% Identity: iTF_00215167;
80% Identity: iTF_00219257;