Basic Information

Insect: Bombus sibiricus
Gene Symbol: -
Assembly: GCA_014737505.1
Location: JACXIM010000175.1:5034007-5039231[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0017 13 6.4 0.1 25 43 115 133 110 140 0.73

2 10 0.00032 2.5 8.7 0.1 22 46 140 164 135 167 0.89

3 10 0.076 5.9e+02 1.1 0.0 27 47 260 280 252 283 0.86

4 10 0.49 3.8e+03 -1.5 0.0 22 34 337 349 335 364 0.74

5 10 0.00096 7.5 7.1 0.2 20 47 498 525 491 530 0.83

6 10 0.16 1.2e+03 0.0 0.1 23 46 528 551 524 553 0.83

7 10 0.0011 8.2 7.0 0.1 26 52 589 615 577 617 0.91

8 10 0.0041 32 5.1 0.3 24 44 615 635 613 641 0.89

9 10 0.02 1.6e+02 2.9 0.3 14 40 633 659 632 662 0.86

10 10 0.28 2.2e+03 -0.8 0.0 27 45 702 720 700 724 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0017	13	6.4	0.1	25	43	115	133	110	140	0.73
2	10	0.00032	2.5	8.7	0.1	22	46	140	164	135	167	0.89
3	10	0.076	5.9e+02	1.1	0.0	27	47	260	280	252	283	0.86
4	10	0.49	3.8e+03	-1.5	0.0	22	34	337	349	335	364	0.74
5	10	0.00096	7.5	7.1	0.2	20	47	498	525	491	530	0.83
6	10	0.16	1.2e+03	0.0	0.1	23	46	528	551	524	553	0.83
7	10	0.0011	8.2	7.0	0.1	26	52	589	615	577	617	0.91
8	10	0.0041	32	5.1	0.3	24	44	615	635	613	641	0.89
9	10	0.02	1.6e+02	2.9	0.3	14	40	633	659	632	662	0.86
10	10	0.28	2.2e+03	-0.8	0.0	27	45	702	720	700	724	0.80

Sequence Information

Coding Sequence: ATGGCATCTAGTAGGTACAATGCGCTAGATCCACTCGCCCCAACTTTTCTGATAGTAAAACTAGAAGATAATTACTTTCGGATACCGACGTCGCTGAGTGTGTTCATGATGAAGGAACCGCCACCAGGTTCCACCGAAGAAAAGAAGGCTCAACCAGCAAAAGAAGATGGCGTTCATTCAACAAAGACAAATCAGACAGAAGAAAAAATAAAAGACGATTCAAGTAGCAACGATTCTTTCGAAGATCTCGACGATGCCCCCTTGGACTTCCGAAAGAGAGAACAGGAGCAAGAACAGGAGAAAAATAAATCTGTGAAACCAATACTCCCTAAGAAGAAAGTACACACGTGCGAGATCTGTTACGCGACTTTCGATCGTAAAAGTAAACATACACGGCACATGTTCAAGCACAGTAACTCGAGACCTCATAAGTGTCCTATTTGCGCGAAAGGATTCAAAACCACAGCTCATCTAAGCAGGCACATGGAGGTTCACGATGAACCGGTAAATCTACATGCATGTAGTCTGTGTGACTTCAAAGCACGCACCAAGCCTTATCTGAAGATCCATTATATTAGAAAGCACACAGAAGACTACAACTATAAATGTGAACAATGTGGGAAGATGTTTAAGGTACAATCAGATTATACGACACATGTGAAAGATCATGATACAGAGTCTTGCGTGTGTGATATCTGTGGCTCGTCTTATCCCAGCAAAAGCTCGCTGTACTTCCATAAGCATTACAAACACAAGACGAAGGTGAAGAAGTTCCCCTGTCAGACATGTAAGAAGAAGTTCAAGACGCAGAAGAATTTAGATAACCATATGGAGCTGCACAAGATTAAATACGTTTGTGAACAATGCGGGATGGAATTTAAGACGAAATATGGCCTCACAAAGCATCTGAGGACTCATTCCGGGGAGAAGTCTTATTTGTGCGCGATTTGTGGGAAAACTTTTGGATGTCTCAGCTCACAGAAGATTCATCTGTTGACGCACGTTGGCGAAAGGCCTTACGTATGCGACATTTGTGGTCAGAGTTTCACCCAGAGGTCACCCATGATGTTGCATCGCAGAAAGCACCCTGGGGTGCACCCACCACCTCCTCCGATTAAAATAACAAACCTGCTACATGGTGTACAAGACAAAATAATCGTGAACAAAAGTAGCAAGTCGACACAGCGTGATCCGCTCGAGCAAACGTACCTCGTGGTACAAAACGTCGACAAATACTTCCTCCTTCCCATGGAGCACAAAACATCGGCACAGAAACGCGAAGAAGAATGCATTACGGGAGATATCACCATCAAGTTGGAGGAACAAGACATACCCGAAGACACGACTGAACAACAGCTAATCGAATCGCCTGAGCGAAAAAATCCTCAAATTGACGAAAGTGCTCAAGTACATACGAATCTATCTGTTCAGACGCCTGTACAATTTTCTCAGTGGTTGGACCAATGTTCCAATGGTTCTGAAAGTATGACGAGCAACGAGGAAACGTTTATTTGCGACTGCTGTTCGAAGATCTTCAGAAAGAAGTATGCATTGCAGAGGCATTTAGAGACTCATAGTAACGCACGGGTGGAATGTTCCGTGTGCCATCGACTCTTAAAGACCAAGAAGACGCTGAAGCTTCATATGATACTGCACGAAGATACCGGTAAAATATTCGAGTGCTCGGAATGCGGCTTTATGTCGAAACGAAAGCAAAATATGACTCGTCATCAGATCAGGATGCACTCGAAGATCGCCGATTACAAATGTCCACTTTGCCCGAAGACGTTTAAATTTAACGGTGATCTTAAAAGACATCATGAAGCGAAACACGTGGTCGACCCATGTTATTGCGAGATTTGTGGAAAAACATATCGAAATAGTCATTTTCTTCGAAAGCACCGCCGCATATCCAAGACACATAGAAACGCTTACACTCGTGTATGTTACGGGGCAATTAGGGGTAATCAGAACATAGAGTGTGCGACCTCGCAAAACAAGGGTAAAGTGAAGCGAGTATTCAATTGCTCCAAGTGCAAATGGCGATTCAGCAGCTGGAGGTTACTAAATAAGCACATGCAACGACATCTCCTCATCTTTAACTGTGACATTTGTGGAGCCGTGTTTAAGTATAAGGCTTCGTTTTTGAAGCATCAAGAATCGCACAAACAATCTGAACAGTTTTAA
Protein Sequence: MASSRYNALDPLAPTFLIVKLEDNYFRIPTSLSVFMMKEPPPGSTEEKKAQPAKEDGVHSTKTNQTEEKIKDDSSSNDSFEDLDDAPLDFRKREQEQEQEKNKSVKPILPKKKVHTCEICYATFDRKSKHTRHMFKHSNSRPHKCPICAKGFKTTAHLSRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSSKSTQRDPLEQTYLVVQNVDKYFLLPMEHKTSAQKREEECITGDITIKLEEQDIPEDTTEQQLIESPERKNPQIDESAQVHTNLSVQTPVQFSQWLDQCSNGSESMTSNEETFICDCCSKIFRKKYALQRHLETHSNARVECSVCHRLLKTKKTLKLHMILHEDTGKIFECSECGFMSKRKQNMTRHQIRMHSKIADYKCPLCPKTFKFNGDLKRHHEAKHVVDPCYCEICGKTYRNSHFLRKHRRISKTHRNAYTRVCYGAIRGNQNIECATSQNKGKVKRVFNCSKCKWRFSSWRLLNKHMQRHLLIFNCDICGAVFKYKASFLKHQESHKQSEQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00228336;
90% Identity: iTF_00215167;
80% Identity: iTF_00227418;