Bbre012810.1
Basic Information
- Insect
- Bombus breviceps
- Gene Symbol
- -
- Assembly
- GCA_014825925.1
- Location
- CM026182.1:349454-354687[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0017 8.7 6.4 0.1 25 43 115 133 110 140 0.73 2 10 0.00032 1.7 8.7 0.1 22 46 140 164 135 167 0.89 3 10 0.076 4e+02 1.1 0.0 27 47 260 280 252 283 0.86 4 10 0.49 2.6e+03 -1.5 0.0 22 34 337 349 335 364 0.74 5 10 0.00013 0.66 10.0 0.4 19 47 497 525 491 530 0.85 6 10 0.092 4.8e+02 0.8 0.1 23 46 528 551 524 554 0.84 7 10 0.001 5.3 7.1 0.1 26 52 589 615 575 617 0.91 8 10 0.0039 20 5.2 0.3 24 44 615 635 612 641 0.89 9 10 0.025 1.3e+02 2.6 0.2 15 40 634 659 633 662 0.84 10 10 0.28 1.5e+03 -0.8 0.0 27 45 702 720 700 724 0.80
Sequence Information
- Coding Sequence
- ATGGCATCTAGTAGGTACAATGCGCTAGATCCACTCGCCCCAACTTTTCTGATAGTAAAACTAGAAGATAATTACTTTCGGATACCGACGTCGCTGAGTGTGTTCATGATGAAGGAACCGCCACCGGGTTCTACCGAAGAAAAGAAGGCTCAACCAGCAAAAGAAGATGGCGTTCATTCAACAAAGACAAATCagacagaagaaaaaataaaagacgatTCAAGTAGCAACGATTCCTTCGAAGATCTCGAAGACGCCCCGTTGGACTTCCGAAAGAGAGAACAGGAGCAAGAacaggagaaaaataaatctgtGAAACCAATACTCCCTAAAAAGAAAGTACACACGTGCGAGATCTGTTACGCGACTTTCGATCGTAAAAGTAAACATACACGGCATATGTTCAAGCACAGTAACTCGAGACCTCATAAGTGTCCTATTTGCGCGAAAGGATTCAAAACCACAGCTCATCTAAGCAGGCACATGGAGGTTCACGATGAACCGGTAAACCTACATGCATGTAGTCTGTGCGACTTCAAAGCACGCACCAAGCCTTATCTGAAGATCCATTATATTAGAAAGCACACAGAAGACTACAACTATAAATGTGAACAATGTGGAAAGATGTTTAAGGTACAATCAGATTATACGACACATGTGAAAGATCATGATACAGAGTCTTGCGTGTGTGATATCTGTGGCTCGTCTTATCCCAGCAAAAGCTCGCTGTACTTCCATAAGCATTACAAACACAAGACGAAGGTGAAGAAGTTCCCCTGTCAGACATGTAAGAAGAAGTTCAAGACGCAGAAGAATTTAGATAACCATATGGAGCTACACAAGATTAAATACGTTTGTGAACAATGCGGGATGGAATTTAAGACGAAATATGGCCTCACCAAGCATCTGAGGACTCATTCCGGGGAGAAATCTTATTTGTGCGCGATTTGTGGGAAAACTTTTGGATGTCTCAGCTCACAGAAGATTCATCTGTTGACGCACGTTGGCGAAAGACCTTACGTATGCGACATTTGTGGACAGAGTTTCACCCAGAGGTCACCCATGATGTTGCATCGCAGAAAGCACCCTGGGGTGCACCCACCACCTCCTCcgattaaaataacaaaccTGCTACATGGTGTACAAGACAAAATAATCGTGAACAAAAGTAGCAAATCGACACAGCGTGATCCGCTCGAGCAAACGTACCTCGTGGTGCAAAACGTCGACAAATACTTCCTACTTCCCATGGAGCACAAAACATCGGCACAGAAACACGAAGAAGAGTGCATTACGGGAGATATCACTATCAAGTTGGAGGCACAAGACATACCCGAAGACACGACTGAACAGCAGCTAATCGAATCGCCTGAGCGAAAAAATCGTCAAATTGACGAAAATGCTCAGGTACATACGAATCTATCTGTTCAGACGCCTGTACAATTTTCTCAGTGGTTGGACCAATATTCCAATGGTTCTGAAAGTATGACGAGCAACGAGGAAACGTTCACTTGCCACTGCTGTGCGAAGATCTTCAGGAAGAAGTACGCATTGCAGAGGCATTTAGAGACTCATAGTAACGCACGGGTGGAATGTTCGGTGTGCCATCAACTCTTAAAGACCAAGAAGACGCTGAAGCTTCATATGATGCTGCACGAAGATACTGGTAAAATATTCGAGTGCTCGGAATGCGGCTTTATGTCGAAACAAAAGCAAAGTATGACTCGTCATCAGATTAGGATGCACTCGAAGATCGCCGATTACAAATGTCCACTTTGCCCGAAGACGTTTAAATTTAACGGTGATCTTAAAAGACATCATGAAGCGAAACACGTGGTCGACCCATGTTATTGCGAGATTTGTGGAAAAACATATCGAAATAgtcattttcttcgaaagcACCGTCGCATATCCAAGACACATAGAAACGCTTACACTCGTGTATGTTACGGGGCAATTAGGGGTAATCAGAACATAGAGTGTGCGACCGCGCAAAACAAGGGTAAAGTGAACCGAGTATTCAATTGCTCTAAGTGCAAATGGCAATTCAGCAGCTTGAGGTTACTAAATAAGCACATGCAACGACATCTCCTCATCTTTAACTGTGACATTTGTGGAGCTGTGTTTAAGTATAAGGCTTCGTTTTTGAAGCATCAAGAATCGCACAAACAATCTGAACAGTTTTAA
- Protein Sequence
- MASSRYNALDPLAPTFLIVKLEDNYFRIPTSLSVFMMKEPPPGSTEEKKAQPAKEDGVHSTKTNQTEEKIKDDSSSNDSFEDLEDAPLDFRKREQEQEQEKNKSVKPILPKKKVHTCEICYATFDRKSKHTRHMFKHSNSRPHKCPICAKGFKTTAHLSRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSSKSTQRDPLEQTYLVVQNVDKYFLLPMEHKTSAQKHEEECITGDITIKLEAQDIPEDTTEQQLIESPERKNRQIDENAQVHTNLSVQTPVQFSQWLDQYSNGSESMTSNEETFTCHCCAKIFRKKYALQRHLETHSNARVECSVCHQLLKTKKTLKLHMMLHEDTGKIFECSECGFMSKQKQSMTRHQIRMHSKIADYKCPLCPKTFKFNGDLKRHHEAKHVVDPCYCEICGKTYRNSHFLRKHRRISKTHRNAYTRVCYGAIRGNQNIECATAQNKGKVNRVFNCSKCKWQFSSLRLLNKHMQRHLLIFNCDICGAVFKYKASFLKHQESHKQSEQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00228336;
- 90% Identity
- iTF_00215167;
- 80% Identity
- iTF_00215167;