Bign019524.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus ignitus
Gene Symbol
-
Assembly
GCA_014825875.1
Location
CM026146.1:4927444-4932698[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.093 9.8 7.1 6.7 1 23 115 137 115 137 0.97
2 16 4.2e-06 0.00044 20.8 2.0 1 23 143 165 143 165 0.98
3 16 0.06 6.3 7.7 1.9 1 23 172 195 172 195 0.94
4 16 2.5e-06 0.00026 21.5 1.3 1 23 201 223 201 223 0.97
5 16 0.66 70 4.5 3.9 2 20 229 247 228 251 0.82
6 16 7.1e-06 0.00075 20.1 2.4 1 23 258 280 258 280 0.97
7 16 1.3e-07 1.3e-05 25.6 1.0 1 23 284 306 284 306 0.99
8 16 0.023 2.4 9.1 1.1 1 23 312 334 312 334 0.94
9 16 3.5e-06 0.00037 21.0 0.6 1 23 340 362 340 362 0.99
10 16 0.00064 0.067 14.0 4.3 1 23 504 526 504 526 0.97
11 16 0.0041 0.44 11.4 2.8 2 23 532 553 531 553 0.96
12 16 0.00019 0.02 15.6 1.5 1 23 560 583 560 583 0.97
13 16 1.8e-05 0.0019 18.8 3.1 1 23 589 612 589 612 0.93
14 16 0.00013 0.014 16.1 5.5 2 22 618 638 617 642 0.92
15 16 1.7e-06 0.00018 22.0 2.7 1 23 675 697 675 697 0.98
16 16 1.5e-05 0.0016 19.1 0.5 1 23 701 723 701 723 0.97

Sequence Information

Coding Sequence
ATGGCGTCTAGTAGGTACAATGCGCTAGATCCACTCGCCCCAACTTTTCTGATAGTAAAACTAGAAGATAATTACTTTCGGATACCGACGTCGCTGAGTGTGTTCATGATGAAGGAACCGCCACCGGGTTCCACCGAAGAAAAGAAGGCTCAACCAGCAAAAGAAGATGGCATTCATTCAACAAAGACAAATCAGACAGAAGAAAAAATAAAGGACGATTCAAGTAGCAACGATTCCTTCGAAGATCTCGACGACGCCCCCTTGGACTTCCGAAAGAGAGAACAGGAGCAAGAACAGGAGAAAAATAAATCTGTGAAACCAATACTCCCTAAGAAGAAAGTACACACGTGTGAGATCTGTTACGCGACTTTCGATCGTAAAAGTAAACATACACGGCACATGTTCAAGCACAGTAACTCGAGACCTCATAAGTGTCCTATTTGCGCGAAAGGATTCAAAACCACAGCTCATCTAAGCAGGCACATGGAGGTTCACGATGAACCGGTAAACCTACATGCATGTAGTCTGTGTGACTTCAAAGCACGCACCAAGCCTTATCTGAAAATCCATTATATTAGAAAGCACACAGAAGACTACAACTATAAATGTGAACAATGTGGAAAGATGTTTAAGGTACAATCAGATTATACTACACATGTGAAAGATCATGATACAGAGTCTTGCGTATGTGATATTTGTGGCTCGTCTTATCCCAGCAAAAGCTCGCTGTACTTCCATAAACATTACAAACACAAGACGAAGGTGAAGAAGTTCCCCTGTCAGACATGTAAGAAGAAGTTCAAGACGCAGAAAAATTTAGATAACCATATGGAGCTGCACAAGATTAAATACGTTTGTGAACAATGCGGGATGGAATTTAAGACAAAATATGGCCTCACCAAGCATCTGAGGACTCATTCCGGGGAGAAGTCTTATTTGTGCGCGATTTGTGGGAAAACTTTTGGATGTCTTAGCTCACAGAAGATTCATCTGTTGACGCACGTTGGTGAAAGGCCTTACGTATGCGACATTTGCGGTCAGAGTTTCACCCAGAGGTCACCCATGATGTTGCATCGCAGAAAGCACCCTGGGGTCCACCCACCACCTCCTCCAATTAAAATAACAAACCTGCTACATGGTGTACAAGACAAAATAATCGTGAACAAGAGTAGCAAGTCGACACAGCGTGATCCGCTTGAGCAAACGTATCTTGTAGTGCAAAACGTCGACAAATACTTCCTCCTTCCCATGGAGCACAAAAACACATCGGCACAGAAACACGAAGAAGAGTGCATTACAGGAGATATCACTATCAAGTTTGAGGAACAAGACATACCCGAAGATACGACTGAACAACAGGTAATCGAATCGCCTGAACGAAAAAATCCTCAAATTGACGAAACTGCTCAGGTACATACGAATCTACCTGTTCAGACGCCTGTACAATGTTCTCAGTGGTTGAATCAATGTTCCAATGGTTCTGAAAGTATGGCGAGCAACGAGAAAACGTTTACTTGCGACTGCTGTTCGAAGATCTTCAGGAAGAAGTACGCATTGCAGAGGCATTTAGAGACTCATAGTAACGCACGGATGGAATGTTCGGTGTGTCATCGACTCCTAAAGACCAAGAAGACGCTGAAGCTTCATATGATGCTGCACGAAGATACCGGTAAAATATTCGAATGCTCGGAATGCGGCTTTATGACAAAACAAAAGCAAAGTATGACTCGTCATCAGATCAGGATGCACTCGAAGATCGCCGATTACAAATGTCAACTTTGCCCAAAGACGTTTAAATTTAACGGTGATCTTAAAAGACATCATGAAGCGAAACACGTGGTCGACCCATGTTATTGCGAGATTTGTGGAAAAACGTATCGAAATAGTCATTTTCTTCGAAAGCACCGGCGTATATCCAAGACACATAGAAACGCTTACAGTCGTGTATGTTACGGGGCAATTAGGGGTAATCAGAACATAGAGTGTGCGACCTCGCAAAACAAGGGTAAAGTGAAGCGAGTATTCAATTGCTCCAAGTGCAAATGGCGATTCAGCAGCTGGAGGTTACTAAATAAGCACATGCAACGACATCTCCTCATTTTTAACTGTGACATTTGTGGAGCCGTGTTTAAGTATAAGGCTTCGTTTTTGAAGCATCAAGAATCGCACAAAAAATCTGAACAGTTTTAA
Protein Sequence
MASSRYNALDPLAPTFLIVKLEDNYFRIPTSLSVFMMKEPPPGSTEEKKAQPAKEDGIHSTKTNQTEEKIKDDSSSNDSFEDLDDAPLDFRKREQEQEQEKNKSVKPILPKKKVHTCEICYATFDRKSKHTRHMFKHSNSRPHKCPICAKGFKTTAHLSRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSSKSTQRDPLEQTYLVVQNVDKYFLLPMEHKNTSAQKHEEECITGDITIKFEEQDIPEDTTEQQVIESPERKNPQIDETAQVHTNLPVQTPVQCSQWLNQCSNGSESMASNEKTFTCDCCSKIFRKKYALQRHLETHSNARMECSVCHRLLKTKKTLKLHMMLHEDTGKIFECSECGFMTKQKQSMTRHQIRMHSKIADYKCQLCPKTFKFNGDLKRHHEAKHVVDPCYCEICGKTYRNSHFLRKHRRISKTHRNAYSRVCYGAIRGNQNIECATSQNKGKVKRVFNCSKCKWRFSSWRLLNKHMQRHLLIFNCDICGAVFKYKASFLKHQESHKKSEQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00228336;
90% Identity
iTF_00215167;
80% Identity
iTF_00221617;