Basic Information

Insect: Bombus ignitus
Gene Symbol: -
Assembly: GCA_014825875.1
Location: CM026146.1:4927444-4932698[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0017 12 6.4 0.1 25 43 115 133 110 140 0.73

2 10 0.00032 2.3 8.7 0.1 22 46 140 164 135 167 0.89

3 10 0.076 5.5e+02 1.1 0.0 27 47 260 280 252 283 0.86

4 10 0.49 3.6e+03 -1.5 0.0 22 34 337 349 335 364 0.74

5 10 6.4e-05 0.47 10.9 0.2 17 47 496 526 491 532 0.86

6 10 0.14 1e+03 0.2 0.1 24 46 530 552 525 554 0.84

7 10 0.022 1.6e+02 2.8 0.2 27 52 591 616 581 618 0.88

8 10 0.0041 30 5.1 0.5 24 44 616 636 613 643 0.89

9 10 0.026 1.9e+02 2.6 0.2 15 40 635 660 634 663 0.84

10 10 0.29 2.1e+03 -0.8 0.0 27 45 703 721 701 724 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0017	12	6.4	0.1	25	43	115	133	110	140	0.73
2	10	0.00032	2.3	8.7	0.1	22	46	140	164	135	167	0.89
3	10	0.076	5.5e+02	1.1	0.0	27	47	260	280	252	283	0.86
4	10	0.49	3.6e+03	-1.5	0.0	22	34	337	349	335	364	0.74
5	10	6.4e-05	0.47	10.9	0.2	17	47	496	526	491	532	0.86
6	10	0.14	1e+03	0.2	0.1	24	46	530	552	525	554	0.84
7	10	0.022	1.6e+02	2.8	0.2	27	52	591	616	581	618	0.88
8	10	0.0041	30	5.1	0.5	24	44	616	636	613	643	0.89
9	10	0.026	1.9e+02	2.6	0.2	15	40	635	660	634	663	0.84
10	10	0.29	2.1e+03	-0.8	0.0	27	45	703	721	701	724	0.79

Sequence Information

Coding Sequence: ATGGCGTCTAGTAGGTACAATGCGCTAGATCCACTCGCCCCAACTTTTCTGATAGTAAAACTAGAAGATAATTACTTTCGGATACCGACGTCGCTGAGTGTGTTCATGATGAAGGAACCGCCACCGGGTTCCACCGAAGAAAAGAAGGCTCAACCAGCAAAAGAAGATGGCATTCATTCAACAAAGACAAATCAGACAGAAGAAAAAATAAAGGACGATTCAAGTAGCAACGATTCCTTCGAAGATCTCGACGACGCCCCCTTGGACTTCCGAAAGAGAGAACAGGAGCAAGAACAGGAGAAAAATAAATCTGTGAAACCAATACTCCCTAAGAAGAAAGTACACACGTGTGAGATCTGTTACGCGACTTTCGATCGTAAAAGTAAACATACACGGCACATGTTCAAGCACAGTAACTCGAGACCTCATAAGTGTCCTATTTGCGCGAAAGGATTCAAAACCACAGCTCATCTAAGCAGGCACATGGAGGTTCACGATGAACCGGTAAACCTACATGCATGTAGTCTGTGTGACTTCAAAGCACGCACCAAGCCTTATCTGAAAATCCATTATATTAGAAAGCACACAGAAGACTACAACTATAAATGTGAACAATGTGGAAAGATGTTTAAGGTACAATCAGATTATACTACACATGTGAAAGATCATGATACAGAGTCTTGCGTATGTGATATTTGTGGCTCGTCTTATCCCAGCAAAAGCTCGCTGTACTTCCATAAACATTACAAACACAAGACGAAGGTGAAGAAGTTCCCCTGTCAGACATGTAAGAAGAAGTTCAAGACGCAGAAAAATTTAGATAACCATATGGAGCTGCACAAGATTAAATACGTTTGTGAACAATGCGGGATGGAATTTAAGACAAAATATGGCCTCACCAAGCATCTGAGGACTCATTCCGGGGAGAAGTCTTATTTGTGCGCGATTTGTGGGAAAACTTTTGGATGTCTTAGCTCACAGAAGATTCATCTGTTGACGCACGTTGGTGAAAGGCCTTACGTATGCGACATTTGCGGTCAGAGTTTCACCCAGAGGTCACCCATGATGTTGCATCGCAGAAAGCACCCTGGGGTCCACCCACCACCTCCTCCAATTAAAATAACAAACCTGCTACATGGTGTACAAGACAAAATAATCGTGAACAAGAGTAGCAAGTCGACACAGCGTGATCCGCTTGAGCAAACGTATCTTGTAGTGCAAAACGTCGACAAATACTTCCTCCTTCCCATGGAGCACAAAAACACATCGGCACAGAAACACGAAGAAGAGTGCATTACAGGAGATATCACTATCAAGTTTGAGGAACAAGACATACCCGAAGATACGACTGAACAACAGGTAATCGAATCGCCTGAACGAAAAAATCCTCAAATTGACGAAACTGCTCAGGTACATACGAATCTACCTGTTCAGACGCCTGTACAATGTTCTCAGTGGTTGAATCAATGTTCCAATGGTTCTGAAAGTATGGCGAGCAACGAGAAAACGTTTACTTGCGACTGCTGTTCGAAGATCTTCAGGAAGAAGTACGCATTGCAGAGGCATTTAGAGACTCATAGTAACGCACGGATGGAATGTTCGGTGTGTCATCGACTCCTAAAGACCAAGAAGACGCTGAAGCTTCATATGATGCTGCACGAAGATACCGGTAAAATATTCGAATGCTCGGAATGCGGCTTTATGACAAAACAAAAGCAAAGTATGACTCGTCATCAGATCAGGATGCACTCGAAGATCGCCGATTACAAATGTCAACTTTGCCCAAAGACGTTTAAATTTAACGGTGATCTTAAAAGACATCATGAAGCGAAACACGTGGTCGACCCATGTTATTGCGAGATTTGTGGAAAAACGTATCGAAATAGTCATTTTCTTCGAAAGCACCGGCGTATATCCAAGACACATAGAAACGCTTACAGTCGTGTATGTTACGGGGCAATTAGGGGTAATCAGAACATAGAGTGTGCGACCTCGCAAAACAAGGGTAAAGTGAAGCGAGTATTCAATTGCTCCAAGTGCAAATGGCGATTCAGCAGCTGGAGGTTACTAAATAAGCACATGCAACGACATCTCCTCATTTTTAACTGTGACATTTGTGGAGCCGTGTTTAAGTATAAGGCTTCGTTTTTGAAGCATCAAGAATCGCACAAAAAATCTGAACAGTTTTAA
Protein Sequence: MASSRYNALDPLAPTFLIVKLEDNYFRIPTSLSVFMMKEPPPGSTEEKKAQPAKEDGIHSTKTNQTEEKIKDDSSSNDSFEDLDDAPLDFRKREQEQEQEKNKSVKPILPKKKVHTCEICYATFDRKSKHTRHMFKHSNSRPHKCPICAKGFKTTAHLSRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSSKSTQRDPLEQTYLVVQNVDKYFLLPMEHKNTSAQKHEEECITGDITIKFEEQDIPEDTTEQQVIESPERKNPQIDETAQVHTNLPVQTPVQCSQWLNQCSNGSESMASNEKTFTCDCCSKIFRKKYALQRHLETHSNARMECSVCHRLLKTKKTLKLHMMLHEDTGKIFECSECGFMTKQKQSMTRHQIRMHSKIADYKCQLCPKTFKFNGDLKRHHEAKHVVDPCYCEICGKTYRNSHFLRKHRRISKTHRNAYSRVCYGAIRGNQNIECATSQNKGKVKRVFNCSKCKWRFSSWRLLNKHMQRHLLIFNCDICGAVFKYKASFLKHQESHKKSEQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00228336;
90% Identity: iTF_00215167;
80% Identity: iTF_00221404;