Basic Information

Insect: Bombus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_014825975.1
Location: CM026164.1:3069460-3074752[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0017 10 6.4 0.1 25 43 115 133 110 140 0.73

2 10 0.00032 2 8.7 0.1 22 46 140 164 135 167 0.89

3 10 0.076 4.8e+02 1.1 0.0 27 47 260 280 252 283 0.86

4 10 0.49 3.1e+03 -1.5 0.0 22 34 337 349 335 364 0.74

5 10 0.00021 1.4 9.2 0.0 19 47 496 524 489 530 0.85

6 10 0.12 7.8e+02 0.4 0.1 23 46 527 550 523 552 0.84

7 10 0.001 6.4 7.1 0.1 26 52 588 614 575 616 0.91

8 10 0.0039 25 5.2 0.3 24 44 614 634 611 640 0.89

9 10 0.021 1.3e+02 2.8 0.3 14 40 632 658 631 660 0.86

10 10 0.28 1.8e+03 -0.8 0.0 27 45 701 719 699 723 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0017	10	6.4	0.1	25	43	115	133	110	140	0.73
2	10	0.00032	2	8.7	0.1	22	46	140	164	135	167	0.89
3	10	0.076	4.8e+02	1.1	0.0	27	47	260	280	252	283	0.86
4	10	0.49	3.1e+03	-1.5	0.0	22	34	337	349	335	364	0.74
5	10	0.00021	1.4	9.2	0.0	19	47	496	524	489	530	0.85
6	10	0.12	7.8e+02	0.4	0.1	23	46	527	550	523	552	0.84
7	10	0.001	6.4	7.1	0.1	26	52	588	614	575	616	0.91
8	10	0.0039	25	5.2	0.3	24	44	614	634	611	640	0.89
9	10	0.021	1.3e+02	2.8	0.3	14	40	632	658	631	660	0.86
10	10	0.28	1.8e+03	-0.8	0.0	27	45	701	719	699	723	0.80

Sequence Information

Coding Sequence: ATGGCATCCAGTAGGTACAATGCGCTAGATCCACTCGCCCCAACTTTTCTGATAGTAAAACTAGAAGATAATTACTTTCGGATACCGACGTCGCTGAGTGTGTTCATGATGAAGGAACCGCCACCGGGTTCCACCGAAGAAAAGAAGGCTCAACCAGCTAAAGAAGATGCCGTTCATTCAACAAAGACAAATCAGACAGAAGAAAAAATAAAGGACGATTCAAGTAGCAACGATTCCTTCGAAGATCTCGACGACGCCCCCTTGGACTTCCGAAAGAGAGAACAGGAGCAAGAACAGGAGAAAAATAAATCTGTGAAGCCAATACTCCCTAAAAAGAAAGTACACACGTGCGAGATCTGTTACGCGACTTTCGATCGTAAAAGTAAACATACACGGCACATGTTCAAACACAGTAACTCGAGACCTCATAAGTGTCCTATTTGCGCGAAAGGATTCAAAACCACAGCTCATCTAAGCAGGCACATGGAGGTTCACGATGAACCGGTAAACCTACATGCATGTAGTCTGTGTGACTTCAAAGCACGCACCAAGCCTTACCTGAAGATCCATTATATTAGAAAGCACACAGAAGACTACAACTATAAATGTGAACAATGTGGAAAGATGTTTAAGGTACAATCAGATTATACGACACATGTGAAAGATCATGATACAGAGTCTTGCGTGTGTGATATCTGTGGCTCGTCTTATCCTAGCAAAAGCTCGCTGTACTTCCATAAGCATTACAAGCACAAGACGAAGGTGAAGAAGTTCCCCTGTCAGACATGTAAGAAGAAGTTCAAGACGCAGAAGAATTTAGATAACCATATGGAGCTGCACAAGATTAAATACGTTTGTGAACAATGCGGGATGGAATTTAAGACGAAATATGGCCTCACCAAGCATCTGAGGACTCATTCCGGGGAGAAGTCTTATTTGTGCGCGATTTGCGGGAAAACTTTCGGATGTCTCAGCTCGCAGAAGATTCATCTGTTGACGCACGTTGGCGAAAGGCCTTACGTATGCGACATTTGTGGTCAGAGTTTCACCCAGAGGTCACCAATGATGTTGCATCGCAGAAAGCACCCTGGAGTGCACCCACCACCTCCTCCCATTAAAATAACAAACCTGCTACATGGTGTACAAGACAAAATAATCGTGAACAAGAGTAGCAAGTCGACACAGCGTGATCCGCTCGAGCAAACGTACCTCGTGGTGCAAAACGTCGACAAATACTTCCTCCTTCCCATGGAGCACAAAACATCGGCACAGAAACACGAAGAAGAGTGCATTACTGGAGATATCACCATCAAGTTGGAGGAACAAGACATACCCGAAGATACGACTGAACAACAGCTGATCGAATCTGAGGGAAAAGATGCTCAAATTGACGAAACTGCTCAGGTACATACGCATCTATCTGTTCAGACGCCTGTACAATTTTCTCAGTGGTTGGACCAATGTTCCAATGGTTCTGAAAGTATGACGAGCAACGAGGAAACGTTTACTTGCGACTATTGTTCGAAGATGTTCAGGAAGAAGTACGCGTTGCAGAGGCATTTAGAGACTCATAGTAACGCACGGGTGGAATGTTCGGTGTGCCATCGACTCCTAAAGACCAAGAAGACGTTGAAGCTTCATATGATGCTGCACGAAGATACCGGTAAAATATTCGAGTGTTCGGAATGCGGCTTTATGTCGAAACGAAAGCAAAGTATGACTCGTCATCAGATCAGGATGCACTCGAAAATCGCCGATTACAAATGTCCACTTTGCCCGAAGACGTTTAAATTCAACGGTGATCTTAAAAGACATCATGAAGCGAAACACGTGGTCGACCCATGTTATTGCGAGATTTGTGGAAAAACGTATCGAAATAGTCATTTTCTTCGAAAGCACCGGCGCATATCCAAGACACATAGAAACGCTTACACTCGTGTGTGTTACGGGGCAATTAGGGGTAATCAGAACATAGAGTGTGCGAGCTCGCAAAACAAGGGTAAAGTGAAGCGAGTATTCAATTGCTCCAAGTGCAAATGGCGATTCAGCAGCTGGAGGTTACTAAATAAGCACATGCAACGACATCTCCTCATCTTTAACTGCGACATTTGTGGAGCCGTGTTTAAGTATAAGGCTTCGTTTTTGAAGCATCAAGAATCGCACAAACAATCTGAACAGTTTTAA
Protein Sequence: MASSRYNALDPLAPTFLIVKLEDNYFRIPTSLSVFMMKEPPPGSTEEKKAQPAKEDAVHSTKTNQTEEKIKDDSSSNDSFEDLDDAPLDFRKREQEQEQEKNKSVKPILPKKKVHTCEICYATFDRKSKHTRHMFKHSNSRPHKCPICAKGFKTTAHLSRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSSKSTQRDPLEQTYLVVQNVDKYFLLPMEHKTSAQKHEEECITGDITIKLEEQDIPEDTTEQQLIESEGKDAQIDETAQVHTHLSVQTPVQFSQWLDQCSNGSESMTSNEETFTCDYCSKMFRKKYALQRHLETHSNARVECSVCHRLLKTKKTLKLHMMLHEDTGKIFECSECGFMSKRKQSMTRHQIRMHSKIADYKCPLCPKTFKFNGDLKRHHEAKHVVDPCYCEICGKTYRNSHFLRKHRRISKTHRNAYTRVCYGAIRGNQNIECASSQNKGKVKRVFNCSKCKWRFSSWRLLNKHMQRHLLIFNCDICGAVFKYKASFLKHQESHKQSEQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00228336;
90% Identity: iTF_00215167;
80% Identity: iTF_00219939;