Bcam006260.1
Basic Information
- Insect
- Bombus campestris
- Gene Symbol
- -
- Assembly
- GCA_905333015.1
- Location
- HG995128.1:3196036-3201223[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0018 9.7 6.3 0.1 25 43 115 133 110 138 0.72 2 9 0.00032 1.8 8.7 0.1 22 46 140 164 135 167 0.89 3 9 0.076 4.2e+02 1.1 0.0 27 47 260 280 252 283 0.86 4 9 0.49 2.7e+03 -1.5 0.0 22 34 337 349 335 364 0.74 5 9 0.00015 0.82 9.7 0.1 20 46 498 524 490 529 0.84 6 9 0.38 2.1e+03 -1.2 0.0 25 46 530 551 524 553 0.83 7 9 0.0012 6.6 6.8 0.1 26 52 589 615 577 616 0.91 8 9 0.0055 30 4.7 0.7 24 44 615 635 613 642 0.90 9 9 0.18 1e+03 -0.2 0.0 27 45 702 720 700 724 0.80
Sequence Information
- Coding Sequence
- ATGGCATCTAGTAGGTACAATGCGCTAGATCCACTCGCCCCAACTTTTCTGATAGTAAAACTAGAAGATAATTACTTTCGGATACCGACGTCGCTGAGTGTGTTCATGATGAAGGAACCACCGCCGGGTTCCACCGAAGAAAAGAAGGCTCAACCAGCAAAAGAAGATGGAGTTCATTCAACAAAGACAAATGAgacagaagaaaaaataaaggacgATTCAAGTAGCAACGATTCCTTCGAAGATCTCGACGACGCCCCCTTGGACTTCCGAAAGAGAGAACAGGAGCAAGAacaggagaaaaataaatctatGAAACCAATACTCCCTAAGAAAAAAGTACACACGTGCGAGATCTGTTACGCGACTTTCGATCGTAAAAGTAAACATACACGACACATGTTCAAGCACAGTAACTCGAGACCTCATAAGTGTCCTATTTGCGCGAAAGGATTCAAAACCACAGCTCATCTAAGCAGGCACATGGAGGTTCACGATGAACCGGTAAACCTACATGCATGTAGTCTGTGTGACTTCAAAGCTCGCACCAAACCTTATCTGAAGATCCATTACATTAGAAAGCACACAGAAGACTACAACTATAAATGTGAACAATGTGGAAAGATGTTTAAGGTACAATCAGATTATACGACACACGTGAAAGATCATGATACAGAGTCTTGCGTGTGTGATATCTGTGGCTCGTCTTATCCCAGCAAAAGCTCGCTGTACTTCCATAAGCATTACAAACACAAGACGAAGGTGAAGAAGTTCCCCTGCCAGACGTGTAAGAAGAAGTTCAAGACGCAGAAGAATTTAGATAACCATATGGAGTTGCACAAGATTAAATACGTTTGTGAACAATGCGGGATGGAATTTAAGACGAAATATGGACTCACCAAGCATCTGAGGACTCATTCCGGGGAGAAGTCTTATTTGTGCGCGATTTGTGGGAAAACTTTTGGATGTCTCAGCTCACAGAAGATTCATCTATTGACGCACGTTGGCGAAAGGCCTTACGTATGCGACATTTGTGGTCAGAGTTTCACCCAGAGGTCACCCATGATGTTGCATCGCAGAAAGCACCCTGGGGTGCACCCACCACCTCCTCccattaaaataacaaaccTGCTACATGGTGTACAAGACAAAATAATCGTGAACAAGAGTAGCAAGTCGACACAGCGTGATCCGCTCGAGCAAACGTACCTCGTGGTGCAAAACGTCGACAAATACTTCCTCCTTCCCATGGAACACAAAACATCGGCACAGAAACACGGAGAAGAGTGCATTACTGGAGATATCACCATCAAGTTGGAGGAACAAGATATACCCGAAGACACGACTGAACAACAGCTAATCGAATCGTCTGAGCGAAAAGATCCTCAAATTGACGAAACTACTCAGGTACATACGAATCTATCTGTTCAGACGCCTGTACAATTTTCTCAATGGTTGGACCAATGTTCCAATGGTTCTGAAAGTATGAGGAGCAACGAGGAAACGTTTACTTGCGACTACTGTTCGAAGATCTTCAGGAAGAAGTACGCATTGCAGAGGCATTTAGAGACTCATAGTAACGTACGGGTGGAGTGTTCGGTGTGCCATCGACTCCTAAAGACCAAGGAGACGCTGAAGCTTCATATGATGCTGCACGAAGATATCGGTAAAATATTCGAGTGCTCGGAATGCGGCTTTATGTCGAAACAAAAGCAGAGTATGACTCGTCATCAGATCAGGATGCACTCGAAGATCGCCGATTATAAATGTCCACTTTGCCCGAAGACGTTTAAATTTAACGGCGATCTTAAAAGACATCATGAAGCGAAACACGTGGTCGACCCATGTTATTGCGAGATTTGTGGAAAAACGTATCGAAATAGTCATTTTCTTCGTAAGCACCGGCGCATATGCAAGACACATAGAAACGCTAACACTCGTGTATATTACGGGGCAATTAGGGGTAATCAGAACATAGAGTGTGCGACCTCGCAAAACAAGGGTAAAGTGAAGCGAGTATTCAATTGCTCCAAGTGCAAATGGCGATTCAGTAGCTGGAAGTTACTAAATAAACACATGCAACGACATTTCCTCATCTTTAACTGTGACATTTGTAGAGCCGTGTTTAAGTATAAGGCTTCGTTTTTGAAGCATCAAGAATCGCACAAACAATCTGAACAGTTTTAA
- Protein Sequence
- MASSRYNALDPLAPTFLIVKLEDNYFRIPTSLSVFMMKEPPPGSTEEKKAQPAKEDGVHSTKTNETEEKIKDDSSSNDSFEDLDDAPLDFRKREQEQEQEKNKSMKPILPKKKVHTCEICYATFDRKSKHTRHMFKHSNSRPHKCPICAKGFKTTAHLSRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSSKSTQRDPLEQTYLVVQNVDKYFLLPMEHKTSAQKHGEECITGDITIKLEEQDIPEDTTEQQLIESSERKDPQIDETTQVHTNLSVQTPVQFSQWLDQCSNGSESMRSNEETFTCDYCSKIFRKKYALQRHLETHSNVRVECSVCHRLLKTKETLKLHMMLHEDIGKIFECSECGFMSKQKQSMTRHQIRMHSKIADYKCPLCPKTFKFNGDLKRHHEAKHVVDPCYCEICGKTYRNSHFLRKHRRICKTHRNANTRVYYGAIRGNQNIECATSQNKGKVKRVFNCSKCKWRFSSWKLLNKHMQRHFLIFNCDICRAVFKYKASFLKHQESHKQSEQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00228336;
- 90% Identity
- iTF_00215167;
- 80% Identity
- iTF_00215853;