Basic Information

Insect: Bombus cullumanus
Gene Symbol: -
Assembly: GCA_014737535.1
Location: JACXIX010000013.1:9374411-9379636[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0022 14 6.0 0.1 25 43 115 133 110 139 0.72

2 10 0.00032 2 8.7 0.1 22 46 140 164 135 167 0.89

3 10 0.075 4.6e+02 1.1 0.0 27 47 260 280 252 283 0.86

4 10 0.48 3e+03 -1.5 0.0 22 34 337 349 335 364 0.74

5 10 8.2e-05 0.51 10.6 0.2 18 47 496 525 483 530 0.85

6 10 0.16 9.9e+02 0.0 0.1 23 46 528 551 524 553 0.83

7 10 0.0016 10 6.4 0.2 26 52 589 615 576 617 0.91

8 10 0.0041 25 5.1 0.5 24 44 615 635 612 642 0.89

9 10 0.019 1.2e+02 3.0 0.4 14 40 633 659 632 662 0.87

10 10 0.32 2e+03 -0.9 0.0 27 44 702 719 700 722 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0022	14	6.0	0.1	25	43	115	133	110	139	0.72
2	10	0.00032	2	8.7	0.1	22	46	140	164	135	167	0.89
3	10	0.075	4.6e+02	1.1	0.0	27	47	260	280	252	283	0.86
4	10	0.48	3e+03	-1.5	0.0	22	34	337	349	335	364	0.74
5	10	8.2e-05	0.51	10.6	0.2	18	47	496	525	483	530	0.85
6	10	0.16	9.9e+02	0.0	0.1	23	46	528	551	524	553	0.83
7	10	0.0016	10	6.4	0.2	26	52	589	615	576	617	0.91
8	10	0.0041	25	5.1	0.5	24	44	615	635	612	642	0.89
9	10	0.019	1.2e+02	3.0	0.4	14	40	633	659	632	662	0.87
10	10	0.32	2e+03	-0.9	0.0	27	44	702	719	700	722	0.78

Sequence Information

Coding Sequence: ATGGCATCTAGTAGGTACAATGCGCTAGATCCACTCGCCCCAACTTTTCTGATAGTAAAACTAGAAGATAATTACTTTCGGATACCGACGTCGCTGAGTGTGTTCATGATGAAGGAACCGCCACCGGGTTCCACCGAAGAAAAGAAGGCTCAACCAGCAAAAGACGATGGCGTTCATTCGACAAAGACAAATCAGACAGAAGAAAAAATAAAGGACGATTCAAGTAGCAACGATTCCTTCGAAGATCTCGACGACGCCCCCTTGGACTTCCGGAAGAGAGAACAGGAGCAAGAACAGGAGAAAAATAAATCTGTGAAACCAATACTCCCTAAGAAGAAAGTACACACGTGCGAGATCTGTTACGCGAGTTTCGATCGTAAAAGTAAACATACACGGCACATGTTCAAGCACAGTAACTCGAGACCTCATAAGTGTCCTATTTGCGCGAAAGGATTCAAAACCACAGCTCATCTAAGCAGGCACATGGAGGTTCACGATGAACCGGTAAACCTACATGCGTGTAGTCTGTGTGACTTCAAAGCACGCACCAAGCCTTATCTGAAGATCCATTATATTAGAAAGCACACAGAAGACTACAACTATAAATGTGAACAATGCGGAAAGATGTTTAAGGTACAATCAGATTATACGACACATGTGAAAGATCATGATACGGAGTCTTGCGTGTGTGATATCTGTGGCTCGTCTTATCCCAGCAAAAGCTCGCTGTACTTCCATAAGCATTACAAACACAAGACGAAGGTGAAGAAGTTCCCCTGTCAGACATGTAAGAAGAAGTTCAAGACGCAGAAGAATTTAGATAACCATATGGAGCTGCACAAGATTAAATACGTTTGTGAACAATGCGGGATGGAATTTAAGACGAAATATGGCCTTACCAAGCATCTGAGGACTCATTCCGGGGAGAAGTCTTACTTGTGCGCGATTTGTGGGAAAACTTTTGGATGTCTCAGCTCACAGAAGATTCATCTGTTGACGCACGTTGGCGAAAGGCCTTACGTATGCGACATTTGTGGTCAGAGTTTCACACAGCGGTCACCCATGATGTTGCATCGCAGAAAGCACCCTGGGGTGCACCCACCACCCCCTCCGATTAAAATAACAAACCTGCTACATGGTGTACAAGACAAAATAATCGTGAACAAAAGTAGCAAGTCGACACAGCGTGATCCGCTCGAGCAAACGTACCTCGTGGTACAAAACGTCGGCAAATACTTCCTCCTTCCCATGGAGCACAAAACATCGGCACAGAAACACGAAGAAGAGTGCATTACGGGAGATATCACCATCAAGTTGGAAGAACAAAACATATCCGAAGACACGACTGAACAACAGCTAATCGAATCGCCTGAGCGAAGAAATCCGCAAATTGACGAAAGTGCTCAGCTACATACGAATCTATCTGTTCAGACCCCTGTACAATTTCCTCCGTGGCTGGACCAATGTTCCAATGGTTCCGAAAGTATGACGAGCAACGAGGAAACGTTCACTTGCGACTGCTGTTCGAAGATCTTCAGAAAGAAGTACGCATTGCAGAGGCATTTGGAGACTCATAGTAACGCACGGGTGGAATGTTCGGTGTGCCATCGACTCTTAAAGACCAAGAAGACGCTGAAGATTCATATGATACTGCACGAAGATACCGGTAAAATATTCAAGTGCTCGGAATGCGGCTTTATGTCGAAACGAAAGCAAAATATGACTCGTCATCAGATCAGGATGCACTCGAAGATCGCCGATTACAAATGTCCACTTTGCCCGAAGACGTTTAAATTTAACGAGGATCTTAAAAGACATCACGAAGCGGAACACGTGGTCGATCCCTGTTATTGCGAGATTTGTGGAAAAACATATCGAAATAGTCATTTTCTTCGAAAGCACCGCCGCATATCCAAGGCACATAGAAACGCTTACACTCGTGTGTGTTACGGGGCAATTAGGGGTAATCAGAACATAGAGTGTGCGACCTCGCAAAACAAGGGTAAAGTGAAGCGAGTATTCAATTGCTCCAAGTGCAAGTGGCGATTCAGCAGCTGGAGGTTACTAAATAAGCACATGCAACGACATCTCCTCATCTTCAACTGTGACATTTGTGGAGCCGTGTTTAAGTATAAGGCTTCGTTTTTGAAGCATCAAGAATCGCACAAATAA
Protein Sequence: MASSRYNALDPLAPTFLIVKLEDNYFRIPTSLSVFMMKEPPPGSTEEKKAQPAKDDGVHSTKTNQTEEKIKDDSSSNDSFEDLDDAPLDFRKREQEQEQEKNKSVKPILPKKKVHTCEICYASFDRKSKHTRHMFKHSNSRPHKCPICAKGFKTTAHLSRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSSKSTQRDPLEQTYLVVQNVGKYFLLPMEHKTSAQKHEEECITGDITIKLEEQNISEDTTEQQLIESPERRNPQIDESAQLHTNLSVQTPVQFPPWLDQCSNGSESMTSNEETFTCDCCSKIFRKKYALQRHLETHSNARVECSVCHRLLKTKKTLKIHMILHEDTGKIFKCSECGFMSKRKQNMTRHQIRMHSKIADYKCPLCPKTFKFNEDLKRHHEAEHVVDPCYCEICGKTYRNSHFLRKHRRISKAHRNAYTRVCYGAIRGNQNIECATSQNKGKVKRVFNCSKCKWRFSSWRLLNKHMQRHLLIFNCDICGAVFKYKASFLKHQESHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00228336;
90% Identity: iTF_00215167;
80% Identity: iTF_00217883;