Bpas012828.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus pascuorum
Gene Symbol
-
Assembly
GCA_905332965.1
Location
HG995275.1:14296311-14300478[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.095 10 7.2 6.7 1 23 113 135 113 135 0.97
2 16 4.3e-06 0.00046 20.8 2.0 1 23 141 163 141 163 0.98
3 16 0.061 6.5 7.8 1.9 1 23 170 193 170 193 0.94
4 16 2.6e-06 0.00027 21.5 1.3 1 23 199 221 199 221 0.97
5 16 0.68 72 4.5 3.9 2 20 227 245 226 249 0.82
6 16 7.3e-06 0.00077 20.1 2.4 1 23 256 278 256 278 0.97
7 16 1.3e-07 1.4e-05 25.6 1.0 1 23 282 304 282 304 0.99
8 16 0.023 2.5 9.1 1.1 1 23 310 332 310 332 0.94
9 16 3.6e-06 0.00038 21.1 0.6 1 23 338 360 338 360 0.99
10 16 4.8e-07 5.1e-05 23.8 2.0 1 23 501 523 501 523 0.98
11 16 0.0045 0.48 11.3 1.8 2 23 529 550 528 550 0.96
12 16 0.026 2.7 8.9 1.5 1 23 557 580 557 580 0.97
13 16 2.6e-06 0.00028 21.5 1.5 1 23 586 608 586 608 0.97
14 16 0.00014 0.015 16.0 4.8 2 22 614 634 613 638 0.92
15 16 1.8e-06 0.00019 22.0 2.7 1 23 671 693 671 693 0.98
16 16 6e-06 0.00064 20.4 0.7 1 23 697 719 697 719 0.98

Sequence Information

Coding Sequence
ATGCTCTCGTACAATGCGCTAGATCCACTCGCCCCAACTTTTCTGATAGTAAAACTAGAAGATAATTACTTTCGGATACCGACGTCGCTGAGTGTGTTCATGATGAAGGAACCGCCACCGGGTTCCACCGAAGAAAAGAAGGCTCAACCAGCAAAAGAAGATGACGTTCATTCAACAAAGACAAATCAGACAGAAGAAAAAATAAAGGACGATTCAAGTAGCAACGATTCCTTCGAAGATCTCGACGACGCCCCCTTGGACTTCCGAAAGAGAGAACAGGAGCAAGAACAGGAGAAAAATAAATCTGTGAAACCAATACTCTCTAAAAAGAAAGTACACACGTGCGAGATATGTTACGCGACTTTCGATCGTAAAAGCAAACATACACGGCACATGTTCAAGCACAGTAACTCGAGACCTCATAAGTGTCCTATTTGCGCGAAAGGATTCAAAACCACAGCTCATCTAAGCAGGCACATGGAGGTTCACGATGAACCGGTAAACCTACATGCATGTAGTCTGTGCGACTTCAAAGCTCGCACCAAGCCTTATCTAAAGATTCATTATATTAGAAAGCACACAGAAGACTACAACTATAAATGTGAACAATGTGGAAAGATGTTCAAGGTACAATCAGATTATACGACACATGTGAAAGATCATGATACGGAGTCTTGCGTGTGCGATATCTGTGGCTCGTCTTATCCCAGCAAAAGCTCGCTGTACTTCCATAAGCATTACAAACACAAGACGAAGGTGAAGAAGTTCCCCTGTCAGACATGTAAGAAAAAGTTCAAGACGCAGAAGAATTTAGATAACCATATGGAGCTGCACAAGATCAAATACGTTTGTGAACAATGCGGGATGGAATTTAAGACGAAATATGGCCTCACCAAGCATCTGAGGACTCATTCCGGGGAGAAGTCTTATTTGTGCGCGATTTGTGGGAAAACTTTTGGATGTCTCAGCTCACAGAAGATTCATCTATTGACGCACGTTGGCGAAAGGCCTTACGTATGCGACATTTGTGGTCAGAGTTTCACCCAGAGGTCACCCATGATGTTGCATCGCAGAAAGCACCCTGGGGTGCACCCACCACCTCCTCCCATTAAAATAACAAACCTGCTACATGGTGTACAAGACAAAATAATCGTGAACAAGAGTAGCAAGTCGACACAGCGTGATCCGCTCGAGCAAACGTATCTCGTGGTGCAAAACGTCGACAAATATTTCCTCCTTCTCATGGACCAGAAAACATCGGCACAGAAACATGAAGAAGAGTGTATTACTGGAGATATCACCATCAAGTTGGAGGAACAAGACATACCCGAAGACACGAATGAACAACAGTTAATCGAATCGTCTGAACAAAGAGATCTTCAAACTGACAAAGCTGCTCAGGTGCATACGAATCTACCTGTTCAGACGCCTGTACAATTTCCTCAGTTGTTGGACCAATGTTCCAATGGTTCTGAAAGTATGACGAGCAACGAGGGAACGTTTACCTGCGATTACTGTTCGAAGATCTTCAGGAAGAAGTACGCATTGCAGAGGCATATAGAGACTCATAGTAACGCACGGGTGGAATGTTCGGTGTGCCATCGACTCCTAAAGACCAAGAAGACGCTGAAGCTTCATATGATCCTGCACGAAGATACCGGTAAAATATTCGAGTGCTCGGAATGCAGCTTTATATCGCAACGAAAGCAAAGTATGACTCGTCATCAGATCAGGATGCACTCGAAGATCGCCGATTACAAATGTTCACTTTGCCCGAAGACGTTTAAATTTAACGGTGATCTTAAAAGACATGAAGCGAAACACGTGGTCGAGCCATGTTATTGCGAGATTTGTGGAAAAACGTATCAAAATAGTCATTCTCTTCGGAAGCACCGGCGCGTATCCAAGACACATAGAAACGCTTACACTCGTGTATGTTACGGGGCAATTAGGGGTAATCAGAACATAGAGCGTGCGACCTCGCAAAACAAGGGTAAAGTGAAGCGAGTATTCAATTGCTCCAAGTGCAAATGGCGATTCAGCAGCTGGAGGTTACTAAATAAGCACATGCAACGACATCTCCTCATCTTTAACTGTGACATTTGTGGAGCTGTGTTTAAGTATAAGGCTTCGTTTGTGAAGCATCAAAAATCGCACAAACAATTTGAACAGTTTTAA
Protein Sequence
MLSYNALDPLAPTFLIVKLEDNYFRIPTSLSVFMMKEPPPGSTEEKKAQPAKEDDVHSTKTNQTEEKIKDDSSSNDSFEDLDDAPLDFRKREQEQEQEKNKSVKPILSKKKVHTCEICYATFDRKSKHTRHMFKHSNSRPHKCPICAKGFKTTAHLSRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSSKSTQRDPLEQTYLVVQNVDKYFLLLMDQKTSAQKHEEECITGDITIKLEEQDIPEDTNEQQLIESSEQRDLQTDKAAQVHTNLPVQTPVQFPQLLDQCSNGSESMTSNEGTFTCDYCSKIFRKKYALQRHIETHSNARVECSVCHRLLKTKKTLKLHMILHEDTGKIFECSECSFISQRKQSMTRHQIRMHSKIADYKCSLCPKTFKFNGDLKRHEAKHVVEPCYCEICGKTYQNSHSLRKHRRVSKTHRNAYTRVCYGAIRGNQNIERATSQNKGKVKRVFNCSKCKWRFSSWRLLNKHMQRHLLIFNCDICGAVFKYKASFVKHQKSHKQFEQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00228336;
90% Identity
iTF_00215167;
80% Identity
-